genome.fa.s5915.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005915.1 Hibiscus syriacus cultivar Beakdansim tig00013890_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76127

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3452--3477	2	13.0	2	100	0	52	50	0	0	50	1.00
9342--9382	22	2.0	20	85	9	55	29	0	9	60	1.28
10764--10801	15	2.5	15	95	0	67	28	7	18	44	1.78
15305--15347	21	2.0	21	86	0	59	20	13	11	53	1.71
21093--21133	19	2.2	18	91	4	64	43	0	2	53	1.13
22372--22405	14	2.4	14	90	5	50	61	2	5	29	1.34
23778--23825	21	2.3	20	86	10	62	31	10	22	35	1.88
26578--26648	24	3.0	24	87	2	90	21	21	23	33	1.97
29305--29352	21	2.3	21	85	3	62	31	14	18	35	1.91
33144--33217	31	2.4	31	86	0	94	17	13	16	52	1.74
34579--34653	30	2.5	30	89	2	107	52	16	12	20	1.75
41003--41045	15	2.9	15	75	10	52	48	0	0	51	1.00
40972--41038	35	1.9	35	88	11	102	47	0	0	52	1.00
42135--42171	18	2.1	18	100	0	74	5	21	0	72	1.04
45104--45148	20	2.2	20	84	7	56	46	2	0	51	1.13
49743--49771	2	14.5	2	100	0	58	51	0	0	48	1.00
51096--51123	2	14.0	2	100	0	56	50	0	0	50	1.00
51391--51431	20	2.0	20	100	0	82	24	17	19	39	1.92
51336--51508	77	2.2	77	90	0	265	28	13	19	38	1.89
51468--51528	20	3.0	20	85	0	86	27	11	16	44	1.82
51391--51605	97	2.2	97	86	1	306	29	13	18	39	1.89
51568--51605	20	1.9	20	100	0	76	23	15	21	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51494--51818	77	4.2	77	90	3	467	29	12	19	39	1.88
51348--51682	174	1.9	174	90	3	532	28	13	18	38	1.89
51642--51682	20	2.0	20	100	0	82	24	17	19	39	1.92
51748--51909	57	2.8	57	86	0	234	31	12	18	37	1.89
51585--52061	134	3.6	133	76	9	468	29	14	19	36	1.92
51834--51978	77	1.9	77	92	0	245	28	14	20	35	1.92
51911--52032	57	2.1	57	90	3	192	27	15	22	33	1.95
51662--52052	191	2.0	191	82	2	473	29	14	20	35	1.92
52025--52073	20	2.4	21	76	10	57	34	12	22	30	1.91
51926--52052	57	2.2	57	85	2	166	28	15	22	33	1.95
52125--52195	20	3.5	20	82	3	79	22	16	22	38	1.93
52159--52233	20	3.7	20	75	8	71	24	14	28	33	1.94
52909--52986	31	2.5	31	100	0	156	19	29	14	37	1.91
55912--55946	2	18.0	2	94	5	63	51	0	0	48	1.00
56164--56231	13	5.2	13	81	0	64	35	16	19	29	1.93
59341--59365	13	1.9	13	100	0	50	60	0	16	24	1.36
59612--59639	12	2.3	12	100	0	56	32	21	14	32	1.93
60488--60858	111	3.3	111	89	1	521	33	12	10	43	1.77
61249--61605	111	3.2	111	89	2	520	33	10	10	44	1.74
62017--62229	110	1.9	110	88	0	318	33	10	9	45	1.72
62102--62263	87	1.9	87	88	5	247	33	11	10	45	1.74
74283--74416	57	2.3	59	83	6	166	32	13	14	39	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75353--75424	2	36.0	2	100	0	144	50	0	0	50	1.00

Tables:   1

The End!