genome.fa.s5916.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005916.1 Hibiscus syriacus cultivar Beakdansim tig00013892_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79569

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
826--889	31	2.1	31	100	0	128	40	12	25	21	1.88
3395--3428	13	2.6	13	86	13	52	64	5	0	29	1.17
6788--6983	54	3.4	54	77	15	221	34	2	34	29	1.69
6853--6891	18	2.2	18	85	0	51	30	0	35	33	1.58
6812--6943	66	2.0	66	89	5	205	34	1	35	28	1.67
20675--20767	43	2.1	43	92	2	150	11	18	21	48	1.80
32160--32192	15	2.1	16	94	5	59	30	27	9	33	1.88
34435--34460	3	8.7	3	100	0	52	0	30	0	69	0.89
37120--37175	22	2.6	22	81	10	71	30	0	5	64	1.16
37862--37930	35	2.0	35	100	0	138	43	11	11	33	1.77
38340--38391	20	2.6	20	96	0	95	38	26	13	21	1.90
38382--38499	20	5.8	20	76	8	85	37	22	19	21	1.95
38447--38659	20	10.6	20	83	5	223	36	25	19	18	1.95
38447--38660	60	3.5	60	82	0	248	36	25	19	18	1.95
39040--39110	33	2.2	33	92	0	115	11	22	18	47	1.80
39231--39285	14	3.6	14	73	21	56	41	23	25	9	1.83
39231--39301	33	2.2	33	94	0	124	43	25	22	8	1.81
39297--39394	19	5.7	19	70	22	81	10	24	22	42	1.84
39319--39408	14	5.7	14	74	23	81	8	25	23	42	1.83
39302--39416	33	3.5	33	95	0	212	9	24	20	45	1.81
41115--41586	185	2.6	185	98	0	917	22	12	18	46	1.82
41115--41586	93	5.1	93	97	1	903	22	12	18	46	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41630--41758	19	7.3	19	75	17	125	45	28	17	8	1.77
41666--41758	33	2.8	32	91	4	150	46	27	18	7	1.76
41630--41758	52	2.5	52	74	14	140	45	28	17	8	1.77
41754--41888	19	7.6	19	75	16	128	11	19	23	45	1.82
41776--41832	14	3.7	14	77	20	60	10	21	22	45	1.82
41759--41851	33	2.8	33	95	0	168	10	20	21	47	1.80
43793--43828	14	2.6	14	95	0	63	33	0	22	44	1.53
43935--44036	19	5.6	19	82	13	142	45	17	22	14	1.85
44065--44338	19	15.4	19	81	15	354	14	20	18	47	1.83
44043--44310	52	5.0	52	92	4	437	14	21	17	46	1.83
44065--44305	109	2.3	102	83	11	176	14	21	17	46	1.83
46618--46642	12	2.1	12	100	0	50	0	28	0	72	0.86
46817--46863	24	2.0	24	87	8	69	38	21	14	25	1.92
47546--47914	20	18.5	20	86	5	451	20	18	26	34	1.96
58155--59651	530	2.8	530	95	0	2661	30	18	24	27	1.98
60352--60396	21	2.1	21	87	0	63	31	28	24	15	1.96
62214--62281	23	3.0	23	91	0	100	20	27	26	25	1.99
64883--64934	2	26.0	2	96	0	95	48	0	1	50	1.12
69886--69959	30	2.4	31	86	4	114	28	13	12	45	1.79
70306--70402	45	2.2	45	81	7	110	46	5	10	38	1.60
75303--75420	52	2.3	51	80	8	125	45	9	7	37	1.65

Tables:   1

The End!