Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005918.1 Hibiscus syriacus cultivar Beakdansim tig00013896_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68784

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
954--1011
24
2.4
24
91
0
89
31
22
20
25
1.98
2038--2074
2
18.5
2
100
0
74
48
0
0
51
1.00
10617--10681
32
2.0
32
84
0
85
23
13
27
35
1.93
11103--11141
20
2.1
19
85
9
53
43
0
0
56
0.99
11234--11283
16
3.1
16
76
2
55
20
14
28
38
1.91
11317--11396
16
5.0
16
71
0
70
10
10
30
50
1.69
11302--11396
32
3.0
32
92
0
163
8
9
30
51
1.64
11244--11369
48
2.6
49
79
1
137
11
11
29
47
1.75
15995--16042
24
2.0
24
88
8
71
56
0
0
43
0.99
20480--20521
21
2.0
22
85
4
59
52
0
2
45
1.13
20949--20997
25
2.0
25
87
0
71
16
20
16
46
1.83
22131--22589
55
8.3
55
88
0
659
29
20
20
28
1.98
24163--24523
183
2.0
182
97
2
679
27
9
21
41
1.84
27439--27485
7
6.7
7
95
0
67
6
34
0
59
1.23
27439--27485
14
3.4
14
90
0
76
6
34
0
59
1.23
28908--28965
30
1.9
30
86
6
82
22
18
20
37
1.94
41452--41499
12
4.4
11
80
15
55
45
2
0
52
1.12
41756--41901
72
2.0
72
100
0
292
31
11
22
34
1.90
41882--42150
129
2.1
130
87
3
389
26
16
29
27
1.97
43623--43680
29
2.0
29
100
0
116
27
24
17
31
1.97
55248--55301
26
2.1
26
85
0
72
66
14
7
11
1.43
61057--61094
11
3.6
10
92
7
58
18
0
18
63
1.32
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61993--62052
30
2.0
31
83
9
79
38
11
18
31
1.87
66886--67136
20
12.6
20
73
11
122
32
23
13
30
1.93
66941--67085
60
2.4
62
81
9
165
32
21
15
31
1.94
66886--67136
40
6.3
40
71
12
140
32
23
13
30
1.93
67008--67136
40
3.2
40
78
5
143
29
20
12
37
1.90
68619--68670
18
2.8
18
85
5
59
42
19
21
17
1.89

Tables:   1

The End!