genome.fa.s5919.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005919.1 Hibiscus syriacus cultivar Beakdansim tig00013897_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  110942

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3488--3702	109	2.0	109	93	0	367	40	13	20	24	1.89
6039--6138	24	4.2	24	80	0	92	52	15	13	20	1.75
10529--10609	24	3.4	24	82	0	72	45	18	17	18	1.86
11856--11901	20	2.3	20	88	0	65	21	19	23	34	1.96
12049--12098	18	2.8	18	100	0	100	42	6	20	32	1.76
13825--13951	20	6.4	20	84	2	132	47	21	16	14	1.83
14522--14677	20	7.7	20	75	7	125	30	19	25	25	1.98
14633--14720	40	2.2	40	80	10	99	29	18	27	25	1.98
17936--17997	28	2.2	28	80	11	72	48	1	3	46	1.28
18396--18457	28	2.2	28	80	11	72	48	1	3	46	1.28
17872--19160	459	2.8	460	97	1	2420	39	4	7	48	1.53
27496--27564	10	7.1	10	72	11	54	81	1	14	2	0.88
28389--28453	31	2.1	30	82	2	76	41	7	16	33	1.77
29680--29727	20	2.4	20	100	0	96	18	8	29	43	1.79
30685--30775	30	3.0	30	88	3	130	36	13	20	29	1.91
30965--31035	6	11.8	6	75	11	56	40	2	21	35	1.68
30963--31057	18	5.3	18	77	0	109	38	4	23	33	1.74
30966--31082	36	3.2	36	95	0	207	38	3	23	35	1.72
33352--33905	157	3.5	157	84	4	686	28	18	6	46	1.74
34714--34764	23	2.2	23	82	6	59	23	17	13	45	1.84
36314--36370	28	2.0	28	100	0	114	14	21	10	54	1.69
37216--37246	2	15.5	2	93	0	53	51	3	0	45	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38109--38195	43	2.0	43	93	0	147	44	12	4	37	1.63
39977--40005	8	3.6	8	100	0	58	24	0	51	24	1.48
42818--42888	35	2.0	35	100	0	142	30	14	11	43	1.80
44330--44426	23	4.1	23	73	4	77	57	18	11	12	1.64
44330--44426	47	2.1	47	88	0	140	57	18	11	12	1.64
44660--44751	24	4.0	24	75	16	88	63	17	9	9	1.51
44671--44755	10	7.7	10	75	19	71	62	18	10	8	1.52
44671--44755	34	2.5	34	98	0	161	62	18	10	8	1.52
51454--51513	31	1.9	31	93	0	102	40	6	10	43	1.64
51976--52037	18	3.2	20	78	19	62	61	0	1	37	1.06
62799--62871	37	2.0	37	97	0	137	15	23	12	49	1.78
62799--62855	18	3.1	18	68	22	55	15	24	10	49	1.76
64478--64528	26	2.0	26	100	0	102	58	5	11	23	1.55
69835--69909	31	2.4	31	86	8	116	33	8	9	49	1.64
70030--70092	27	2.3	27	80	0	72	60	0	4	34	1.18
73528--73637	29	3.8	29	81	4	114	39	16	18	26	1.91
74216--74240	13	1.9	13	100	0	50	40	16	20	24	1.91
76246--76282	19	1.9	19	89	10	58	37	2	0	59	1.12
77039--77089	22	2.2	23	86	6	68	47	17	19	15	1.83
78830--78869	18	2.2	18	90	0	62	15	30	40	15	1.87
79173--79286	60	1.9	60	80	7	133	34	15	2	47	1.60
83155--83198	13	3.5	13	93	3	72	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
89255--89297	22	2.0	22	86	9	61	67	4	0	27	1.10
89689--89735	24	1.9	25	86	4	69	29	21	10	38	1.87
90978--91022	2	22.5	2	100	0	90	51	0	0	48	1.00
93839--94160	103	3.1	103	95	0	563	26	13	23	36	1.92
94177--94234	23	2.5	23	88	0	80	17	25	31	25	1.97
94167--94244	23	3.3	23	78	1	66	21	19	24	34	1.96
97439--97482	21	2.1	21	86	0	61	31	27	25	15	1.96
99018--99339	103	3.1	103	96	0	581	26	13	23	36	1.92
99356--99412	23	2.5	23	85	0	69	17	24	29	28	1.97
102614--102656	20	2.2	20	86	0	59	32	25	25	16	1.96
104182--104503	103	3.1	102	96	1	581	26	13	23	36	1.92
104519--104571	23	2.3	23	80	0	70	18	24	28	28	1.98
107514--107566	25	2.2	24	93	3	88	54	0	5	39	1.24
107532--107566	12	2.9	12	82	0	52	60	0	2	37	1.12
108633--108852	30	7.4	30	91	2	347	33	23	18	25	1.96
108633--108839	89	2.3	89	91	2	346	34	22	17	24	1.96

Tables:   1

The End!