genome.fa.s592.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000592.1 Hibiscus syriacus cultivar Beakdansim tig00001148_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76194

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5044--5076	17	1.9	17	100	0	66	30	15	0	54	1.41
14369--14778	207	2.0	207	99	0	802	30	14	18	36	1.91
19948--20162	103	2.1	103	93	1	369	37	23	12	26	1.90
20928--21001	23	3.4	23	74	14	93	20	28	21	29	1.98
20907--21020	19	5.5	19	70	16	75	21	28	21	28	1.99
20907--21021	42	2.7	42	94	1	194	20	28	21	28	1.98
21098--21161	19	3.4	19	97	0	119	20	31	20	28	1.97
25923--25991	23	3.0	23	84	0	93	30	24	21	23	1.99
26010--26189	96	1.9	96	95	0	324	35	25	13	26	1.92
28754--28907	76	2.0	76	84	2	193	44	13	8	33	1.74
29273--29318	18	2.6	18	93	6	76	41	17	6	34	1.75
35056--35114	22	2.6	23	91	5	102	23	30	27	18	1.98
35721--35870	67	2.3	67	91	3	241	14	27	28	29	1.95
41927--41993	22	3.0	23	86	4	82	28	28	23	19	1.98
41935--41993	22	2.6	22	91	2	91	25	30	25	18	1.98
42600--42750	66	2.3	67	90	4	234	14	27	28	29	1.95
50403--50473	31	2.3	31	80	4	81	47	2	4	45	1.36
50431--50470	20	2.0	20	85	9	55	55	2	0	42	1.13
50567--50628	19	3.1	19	78	17	72	45	1	3	50	1.27
50567--50631	20	3.2	20	77	14	71	46	1	3	49	1.27
53118--53196	41	1.9	41	92	0	131	27	7	31	32	1.85
53127--53207	41	2.0	41	90	0	126	27	11	29	32	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61948--61980	5	6.6	5	92	0	57	21	0	15	63	1.30
62497--62533	15	2.5	15	90	0	56	56	2	0	40	1.13
64167--64197	16	1.9	16	93	0	53	45	6	0	48	1.28

Tables:   1

The End!