Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005921.1 Hibiscus syriacus cultivar Beakdansim tig00013900_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70653

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2027--2056
2
15.0
2
100
0
60
50
0
0
50
1.00
11735--11766
14
2.1
16
88
11
50
15
15
18
50
1.79
12012--12063
23
2.3
23
83
3
61
3
3
23
69
1.22
15448--15484
19
1.9
19
94
0
65
54
8
13
24
1.66
20401--20471
29
2.4
29
97
0
133
36
12
30
19
1.89
25114--25144
16
1.9
16
93
0
53
22
9
16
51
1.73
25943--25993
23
2.2
24
86
6
70
23
7
17
50
1.72
27992--28027
17
2.2
16
90
5
54
50
0
5
44
1.25
30023--30069
21
2.2
21
88
0
67
34
21
21
23
1.97
30078--30200
21
5.9
21
89
0
174
23
17
30
28
1.97
30084--30215
21
6.3
21
87
1
113
22
17
29
30
1.97
30078--30215
63
2.2
63
85
2
188
23
18
28
29
1.97
30140--30282
41
3.5
41
81
6
157
23
18
23
34
1.96
30425--30449
11
2.3
11
100
0
50
28
52
20
0
1.47
30553--30578
2
13.0
2
100
0
52
0
50
0
50
1.00
30805--30858
21
2.6
21
93
0
90
31
25
22
20
1.98
30867--31065
21
9.6
21
74
14
162
23
18
25
32
1.97
30873--31065
41
4.7
41
84
5
173
23
18
25
32
1.97
30976--31044
20
3.4
20
68
18
61
26
17
18
37
1.93
31172--31242
6
12.5
6
96
3
114
29
53
16
0
1.44
31892--31938
21
2.2
21
88
0
67
23
21
23
31
1.98
39186--39233
18
2.7
18
80
9
62
41
0
4
54
1.20
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63863--63903
21
1.9
22
85
5
57
17
7
21
53
1.67
64079--64222
33
4.4
32
92
3
243
44
15
8
31
1.77
64079--64222
65
2.2
65
98
0
279
44
15
8
31
1.77
64209--64250
21
2.0
21
100
0
84
47
4
14
33
1.65
66411--66455
22
2.0
22
87
8
65
31
17
15
35
1.92

Tables:   1

The End!