genome.fa.s5923.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005923.1 Hibiscus syriacus cultivar Beakdansim tig00013902_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73669

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3150--3216	18	3.5	18	75	15	71	19	22	31	26	1.98
4109--4148	13	2.9	14	85	7	55	50	12	17	20	1.78
6437--6476	21	1.9	21	94	0	71	30	15	7	47	1.72
6471--6569	33	3.0	33	94	1	164	32	7	15	45	1.73
6555--6609	13	4.2	13	75	13	58	34	3	12	49	1.59
6805--6861	21	2.7	21	91	0	96	19	26	26	28	1.99
9616--9667	23	2.3	22	90	6	77	44	19	1	34	1.62
9626--9688	23	2.7	23	90	0	90	38	19	6	36	1.77
10092--10178	39	2.2	39	93	0	147	18	13	19	48	1.81
10437--10473	18	2.1	18	89	0	56	51	10	5	32	1.60
10722--10772	25	2.0	25	92	0	84	39	19	7	33	1.81
11038--11109	23	3.2	22	86	4	90	38	20	5	34	1.76
13627--13713	3	29.0	3	77	0	84	24	34	5	35	1.79
13627--13728	18	5.7	18	79	0	87	22	34	6	36	1.81
13635--13725	42	2.2	42	91	0	146	21	35	7	35	1.83
15186--16558	399	3.4	399	98	0	2610	31	15	15	37	1.89
15186--16558	199	6.9	200	98	0	2614	31	15	15	37	1.89
16677--16725	19	2.6	19	93	0	80	57	10	2	30	1.43
18515--18580	33	2.0	33	87	0	96	24	45	1	28	1.62
20885--20931	20	2.4	19	79	10	58	19	17	8	55	1.67
21053--21098	20	2.3	20	89	10	76	17	17	10	54	1.70
26689--26730	22	2.0	21	85	4	57	38	0	4	57	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35193--35284	28	3.2	28	63	19	71	42	18	14	25	1.87
35428--35491	31	2.1	31	96	0	119	50	9	10	29	1.69
37083--37132	6	8.3	6	95	0	91	38	32	14	16	1.88
38050--38129	40	1.9	40	82	7	97	37	8	15	38	1.78
39284--39342	16	3.7	16	88	0	91	10	10	22	57	1.61
39357--39429	31	2.4	31	97	0	137	49	16	8	26	1.73
43305--43329	2	12.5	2	100	0	50	0	0	52	48	1.00
49354--49387	15	2.2	15	89	5	50	64	2	2	29	1.22
54273--54313	20	2.0	20	95	0	73	19	19	21	39	1.93
68808--69055	87	2.9	87	90	6	371	39	7	21	30	1.81
68808--69055	43	5.7	44	91	4	380	39	7	21	30	1.81

Tables:   1

The End!