genome.fa.s5924.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005924.1 Hibiscus syriacus cultivar Beakdansim tig00013908_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85062

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
506--710	108	1.9	108	81	2	250	33	13	31	21	1.92
11925--12012	29	2.9	31	80	13	103	25	17	4	53	1.62
14748--14836	38	2.3	38	76	0	88	22	14	13	49	1.78
15061--15104	23	1.9	23	90	0	70	47	9	9	34	1.67
15590--15662	32	2.4	30	77	8	78	34	2	15	47	1.59
22054--22112	21	2.8	22	84	5	77	23	16	22	37	1.94
22613--22791	65	2.8	63	79	9	157	27	18	24	29	1.98
22632--22791	65	2.5	65	83	5	191	28	18	23	30	1.98
23822--23865	21	2.1	21	82	0	52	34	13	40	11	1.81
27066--27160	20	4.7	20	74	8	84	36	22	20	21	1.95
27067--27198	21	6.5	21	73	11	96	37	21	18	21	1.95
27089--27198	41	2.7	41	84	6	136	35	22	19	22	1.96
28031--28087	21	2.7	21	88	0	78	15	17	24	42	1.88
30056--30107	23	2.4	21	72	12	50	28	28	23	19	1.98
30009--30107	44	2.3	42	82	6	119	29	26	20	24	1.99
30027--30126	44	2.3	42	78	8	103	29	24	23	24	1.99
32024--32052	14	2.0	15	93	6	51	6	3	27	62	1.37
34926--34951	13	2.0	13	100	0	52	46	0	0	53	1.00
34925--34962	13	2.6	14	84	16	51	50	0	0	50	1.00
57103--57152	3	16.7	3	95	0	91	66	2	32	0	1.03
64723--64773	21	2.4	21	77	6	59	23	25	17	33	1.96
64803--64875	21	3.5	21	79	3	76	23	21	17	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64865--64974	20	5.6	20	76	8	100	38	20	19	21	1.94
64783--64897	41	2.8	41	75	7	110	26	22	18	32	1.97
65492--65565	19	4.1	19	69	24	70	45	21	21	10	1.82
65532--65574	19	2.3	19	91	0	68	46	25	18	9	1.79
65586--65648	33	1.9	33	96	0	117	11	23	23	41	1.87
65594--65663	14	4.6	14	75	16	68	10	25	24	40	1.86
65594--65684	47	1.9	48	93	2	157	10	25	24	39	1.88
65655--65712	20	2.9	20	82	10	73	13	22	18	44	1.85
67837--67925	42	2.1	42	81	8	101	22	35	19	22	1.95
69273--69309	14	2.6	14	88	12	58	29	0	21	48	1.50
69416--69533	19	6.7	19	70	20	87	46	19	19	14	1.84
69416--69509	33	2.8	33	90	0	152	45	18	20	15	1.85
69481--69543	19	3.3	19	91	4	92	46	23	15	14	1.83
69543--69702	33	4.8	33	97	0	275	11	24	18	45	1.83
69564--69684	14	7.6	14	67	24	53	11	24	19	44	1.83
69696--69768	20	3.6	20	68	17	60	24	15	24	35	1.94
72026--72050	12	2.1	12	100	0	50	0	28	0	72	0.86
72997--73113	20	5.8	20	89	0	153	24	26	19	29	1.99
72991--73122	40	3.3	40	77	4	122	28	25	18	27	1.98
72991--73122	60	2.2	60	78	8	160	28	25	18	27	1.98
73319--73376	20	2.9	20	100	0	116	36	25	22	15	1.94
74993--75084	42	2.2	42	88	1	141	20	15	42	21	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75020--75080	21	2.9	21	73	9	70	21	13	42	22	1.87
75421--75493	20	3.7	20	90	0	74	34	27	16	21	1.95
75427--75512	40	2.2	40	85	4	111	34	26	20	17	1.95
75447--75533	20	4.4	20	88	1	122	36	24	24	14	1.93
75564--75642	19	4.4	19	72	16	69	12	21	22	43	1.86
75595--75650	20	2.9	19	78	2	58	17	23	19	39	1.92
76206--76253	18	2.7	18	93	0	87	14	12	45	27	1.81
77884--77927	22	2.0	22	95	0	79	18	15	45	20	1.85
78169--78252	21	4.0	22	77	13	88	16	19	25	39	1.92
78094--78231	41	3.4	41	78	2	161	23	15	23	37	1.93
78121--78227	20	5.3	20	75	6	99	23	14	27	34	1.94
78121--78249	41	3.2	41	82	3	127	22	16	25	35	1.94
78217--78272	21	2.7	21	94	0	94	19	21	19	39	1.93
78279--78331	21	2.5	22	81	6	74	33	18	26	20	1.96
80948--80995	20	2.5	20	89	3	71	29	14	25	31	1.95
82129--82156	2	14.0	2	100	0	56	50	0	0	50	1.00
84994--85021	2	14.0	2	100	0	56	50	0	0	50	1.00

Tables:   1

The End!