Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005925.1 Hibiscus syriacus cultivar Beakdansim tig00013909_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82423

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1579--1627
24
2.0
26
92
8
84
36
6
24
32
1.80
1823--1995
21
8.6
21
74
15
127
20
19
24
35
1.96
1823--2022
79
2.5
79
82
10
205
22
19
23
35
1.96
1848--2022
39
4.3
40
86
9
209
22
19
22
36
1.96
1906--2016
21
5.4
21
72
14
106
21
18
20
39
1.92
2831--2944
19
5.7
20
76
11
108
31
25
18
24
1.97
3285--3381
31
3.3
29
73
18
67
45
0
4
50
1.20
3443--3540
28
3.3
29
80
13
94
53
2
0
44
1.12
3488--3564
32
2.6
30
82
10
88
49
1
1
48
1.17
3545--3596
18
2.8
20
74
14
56
53
0
0
46
1.00
3575--3623
22
2.2
21
86
13
64
51
0
0
48
1.00
3789--3907
42
2.8
42
93
0
202
47
17
17
17
1.84
4112--4263
78
1.9
79
86
2
218
37
13
16
32
1.87
4888--4935
24
2.0
24
84
4
62
54
6
2
37
1.38
9303--9350
24
2.0
24
84
8
62
43
16
18
20
1.88
10623--10649
12
2.2
12
100
0
54
59
0
40
0
0.98
20852--20880
11
2.6
11
100
0
58
41
0
10
48
1.37
23758--23960
81
2.5
80
92
3
336
44
11
6
37
1.67
31219--31252
2
17.0
2
100
0
68
50
0
0
50
1.00
31537--31909
158
2.4
156
85
6
495
48
6
17
26
1.72
31519--31921
155
2.6
152
83
7
477
47
7
16
28
1.73
33499--33543
21
2.1
22
87
4
65
40
0
4
55
1.20
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33532--33561
15
2.0
15
100
0
60
33
0
0
66
0.92
37742--37766
12
2.1
12
100
0
50
20
16
8
56
1.65
37999--38023
3
8.3
3
100
0
50
32
0
36
32
1.58
39704--39745
21
2.0
21
95
0
75
26
28
21
23
1.99
39858--39942
34
2.5
35
92
5
138
18
24
35
21
1.96
39886--39947
20
3.3
20
69
26
64
12
32
33
20
1.91
41874--41935
19
3.3
19
90
0
79
37
12
11
38
1.80
42000--42090
31
3.0
31
96
3
168
42
17
6
32
1.75
43666--43706
21
2.0
21
95
0
73
26
29
17
26
1.97
43820--43875
15
3.5
15
76
21
60
19
25
35
19
1.95
43819--43944
20
6.9
19
77
18
85
15
28
34
20
1.94
43819--43943
33
3.5
35
83
12
139
16
28
35
20
1.94
43868--43948
20
4.0
20
90
6
119
13
29
35
20
1.91
43819--43902
33
2.5
33
94
3
141
17
27
34
20
1.95
43880--43948
20
3.4
20
94
4
120
10
33
34
21
1.87
45255--45319
31
2.1
31
91
5
105
66
10
3
20
1.36
50321--50402
15
5.5
15
83
2
103
39
6
18
36
1.75
50336--50402
30
2.3
30
94
2
118
40
7
17
34
1.78
50317--50402
45
1.9
44
90
2
136
41
5
17
34
1.73
50385--50454
20
3.5
20
96
0
131
40
10
14
35
1.79
50620--50723
29
3.5
29
79
19
101
52
1
0
44
1.18
50737--50780
22
2.0
23
86
4
63
54
0
0
45
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50620--50782
54
2.9
58
75
17
146
52
1
1
45
1.16
50741--50797
21
2.6
22
81
10
64
52
0
0
47
1.00
50677--50797
54
2.3
51
77
19
133
50
0
0
47
1.12
50986--51105
42
2.9
42
96
0
222
45
19
20
15
1.86
51352--51426
29
2.5
31
75
10
75
25
24
4
46
1.69
54448--54492
22
2.0
22
95
0
81
24
20
26
28
1.99
57807--57840
2
17.0
2
100
0
68
50
0
0
50
1.00
61193--61239
7
6.7
7
100
0
94
42
0
0
57
0.98
63445--63484
20
2.0
20
100
0
80
30
25
5
40
1.77
63826--63856
15
2.1
15
93
0
53
35
25
25
12
1.92
70256--70294
19
2.1
19
85
9
53
30
2
2
64
1.21
74325--74353
13
2.2
13
100
0
58
6
62
31
0
1.22
75144--75200
3
19.0
3
75
13
55
59
1
0
38
1.08
75133--75181
14
3.6
13
86
8
71
55
2
0
42
1.11
75158--75200
18
2.3
19
96
4
79
60
0
0
39
0.97
75144--75206
34
1.9
33
87
6
92
58
1
0
39
1.07
75323--76229
76
12.0
76
94
1
1585
35
21
20
21
1.96
75323--76229
226
4.0
228
94
1
1585
35
21
20
21
1.96
75323--76229
302
3.0
303
94
2
1594
35
21
20
21
1.96
76193--76254
28
2.2
29
91
2
99
43
20
19
16
1.88
76193--76258
29
2.3
28
92
2
105
40
21
18
19
1.91
76964--77018
22
2.5
22
93
0
101
40
14
10
34
1.81

Tables:   1

The End!