Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005929.1 Hibiscus syriacus cultivar Beakdansim tig00013919_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93793

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7796--7858
15
4.3
15
75
15
60
17
3
14
65
1.40
7812--7850
15
2.4
16
91
8
62
12
5
12
69
1.35
8766--8824
31
1.9
31
89
0
91
62
11
6
18
1.50
9536--9610
31
2.4
31
82
4
89
29
22
16
32
1.95
12032--12096
30
2.1
31
83
8
80
35
6
13
44
1.69
12094--12144
27
1.9
27
84
4
68
35
5
1
56
1.35
13786--13870
33
2.6
33
81
3
91
37
3
9
49
1.52
14077--14119
11
3.8
11
85
14
61
46
2
0
51
1.13
14939--14987
23
2.1
23
96
0
89
61
0
14
24
1.33
15505--15536
15
2.1
15
94
0
55
46
6
9
37
1.61
18955--19041
42
2.1
42
100
0
174
65
13
6
13
1.45
20614--20667
22
2.4
23
85
11
69
31
9
11
48
1.70
27303--27373
27
2.7
26
72
14
72
56
5
26
11
1.56
33905--33929
12
2.1
12
100
0
50
16
24
16
44
1.86
39603--39642
19
2.1
19
90
0
62
40
30
7
22
1.81
44213--44598
127
3.0
127
99
0
763
38
19
12
29
1.89
49479--49530
4
13.5
4
80
15
65
28
0
0
71
0.87
49486--49534
21
2.2
23
89
7
75
28
0
0
71
0.86
49481--49533
17
3.1
17
84
10
72
28
0
0
71
0.86
49481--49553
21
3.7
21
79
13
59
28
0
1
69
0.96
49501--49590
44
1.9
49
82
13
118
30
1
4
64
1.20
51487--51549
30
2.1
30
100
0
126
38
12
6
42
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54019--54120
37
2.8
37
92
3
161
33
22
17
26
1.96
57511--57573
24
2.6
25
87
2
92
39
17
1
41
1.59
61541--61574
16
2.1
16
94
0
59
38
20
2
38
1.68
69691--69717
2
13.5
2
100
0
54
48
0
0
51
1.00
70129--70158
2
15.0
2
100
0
60
50
0
0
50
1.00
79581--79617
19
1.9
19
94
0
65
32
18
18
29
1.96
79828--79889
31
2.0
31
81
6
72
48
0
16
35
1.46
81729--81795
2
33.5
2
96
0
125
50
0
1
47
1.10
82855--82946
34
2.6
35
81
10
107
46
3
2
47
1.30
82902--82990
43
2.1
43
85
8
119
46
6
2
44
1.42
82883--83025
77
1.9
76
85
8
200
46
6
2
44
1.43
82941--83100
35
4.7
31
77
16
113
42
6
3
47
1.46
82962--83100
35
4.1
34
81
10
117
42
6
3
47
1.46
83052--83155
55
2.0
53
85
11
142
41
8
1
48
1.45
84288--84345
9
6.1
9
78
11
53
68
0
3
27
1.05
84317--84346
3
10.0
3
100
0
60
66
0
0
33
0.92
85696--86230
84
6.4
84
84
3
661
22
20
23
33
1.97
85696--86182
165
2.9
165
86
4
615
22
20
23
33
1.97
89921--89959
19
2.0
21
90
10
64
79
2
10
7
1.02
91179--91227
25
2.0
25
92
4
82
67
0
8
24
1.18
91265--91297
3
11.0
3
100
0
66
66
0
0
33
0.92

Tables:   1

The End!