Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000593.1 Hibiscus syriacus cultivar Beakdansim tig00001149_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86578

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3543--3584
17
2.5
17
92
0
66
28
26
9
35
1.88
13336--13380
6
7.3
6
87
2
54
35
0
2
62
1.08
23345--23386
18
2.3
19
84
12
61
14
9
23
52
1.71
27140--27167
2
14.0
2
100
0
56
50
0
0
50
1.00
29807--29857
3
17.0
3
100
0
102
33
0
0
66
0.92
35748--35800
21
2.5
21
90
0
79
32
32
18
16
1.94
35796--35875
44
1.9
40
87
10
115
22
20
21
36
1.95
35804--36058
63
4.1
62
74
14
236
23
18
23
35
1.96
35867--36055
42
4.5
42
93
0
306
22
17
23
35
1.95
36945--37016
21
3.5
20
70
21
58
38
25
18
18
1.92
36941--37035
42
2.3
42
94
0
163
36
26
17
18
1.94
36966--37035
21
3.3
21
71
15
72
34
28
18
18
1.95
38547--38591
22
2.0
22
83
8
56
51
0
4
44
1.21
38732--38792
32
1.9
32
86
0
86
36
29
26
8
1.85
39143--39168
3
8.7
3
100
0
52
34
0
0
65
0.93
40682--40752
35
2.0
35
83
0
88
49
4
14
32
1.62
43848--43885
20
2.0
20
89
5
60
50
21
5
23
1.69
49469--49516
2
24.0
2
100
0
96
0
50
0
50
1.00
63983--64027
22
2.0
22
100
0
90
22
26
4
46
1.70
82447--82496
17
3.0
17
76
2
57
50
4
2
44
1.32
83156--83192
17
2.3
15
90
9
56
43
10
2
43
1.53

Tables:   1

The End!