genome.fa.s5930.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005930.1 Hibiscus syriacus cultivar Beakdansim tig00013920_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  177149

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1695--1744	19	2.6	19	87	0	82	18	16	16	50	1.79
5992--6035	21	2.2	20	83	4	52	52	2	2	43	1.26
22198--22279	23	3.6	22	75	15	87	26	21	21	29	1.99
28362--28395	10	3.5	10	84	8	52	70	0	0	29	0.87
28355--28399	19	2.3	19	84	3	63	68	0	0	31	0.89
35501--35590	2	45.0	2	97	0	171	50	1	0	48	1.08
35985--36016	2	16.0	2	100	0	64	50	0	0	50	1.00
36122--36328	53	3.9	53	82	2	245	36	9	18	35	1.84
36532--36566	6	6.0	6	96	3	63	82	0	0	17	0.66
38877--40022	12	95.6	12	95	0	1889	47	24	2	26	1.66
40164--40196	13	2.5	13	90	9	50	66	0	0	33	0.92
40240--40294	16	3.4	16	76	18	60	29	0	1	69	0.99
40235--40287	26	2.0	26	86	13	74	33	0	1	64	1.05
42930--42964	3	12.0	3	93	6	63	34	0	0	65	0.93
47080--47155	35	2.2	35	95	0	134	27	25	6	40	1.80
51581--51636	26	2.1	27	93	3	96	26	7	17	48	1.73
54264--54337	21	3.5	21	84	0	103	35	18	13	32	1.90
66767--66800	16	2.1	16	88	0	50	41	2	0	55	1.15
82570--82601	15	2.1	16	94	5	57	6	25	18	50	1.70
84999--85059	22	2.7	22	94	5	104	18	13	6	62	1.51
90988--91054	32	2.1	32	91	2	109	13	14	22	49	1.79
93957--94011	20	2.7	20	73	21	51	49	14	1	34	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96185--96210	13	2.0	13	100	0	52	23	30	30	15	1.95
96645--96676	15	2.0	17	88	11	50	56	0	6	37	1.25
105097--105166	33	2.1	35	83	5	90	47	8	11	32	1.70
115576--115841	133	2.0	133	100	0	532	29	23	18	28	1.98
115797--115954	53	3.0	51	90	6	237	20	32	27	18	1.96
116028--116075	21	2.3	21	92	0	78	29	45	2	22	1.64
116093--116133	10	4.1	10	84	12	57	31	29	0	39	1.57
118185--118248	23	2.8	22	85	4	83	26	26	26	20	1.99
118256--118481	103	2.2	103	96	0	416	36	25	13	24	1.92
118930--119057	64	2.0	67	86	7	183	27	17	18	35	1.94
118942--119102	64	2.5	62	80	8	162	27	19	17	35	1.94
122386--122509	50	2.5	50	82	4	151	20	30	32	16	1.95
122784--122844	31	2.0	31	93	0	104	34	6	6	52	1.53
123422--123457	18	2.0	18	100	0	72	72	0	5	22	1.05
124451--124501	18	2.9	18	82	5	61	37	3	27	31	1.75
124754--124832	33	2.4	34	89	2	124	41	34	10	13	1.79
124790--125315	210	2.4	213	87	5	713	38	26	11	23	1.89
125536--125561	2	13.0	2	100	0	52	50	0	0	50	1.00
127066--127197	60	2.2	59	86	4	192	50	8	1	39	1.42
134738--134807	31	2.3	31	92	5	115	54	10	4	31	1.53
136353--136383	15	2.1	15	93	0	53	9	38	32	19	1.84
142613--142645	15	2.1	16	88	5	50	6	21	18	54	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
144330--144385	19	3.0	19	92	2	87	25	12	25	37	1.91
157353--157414	26	2.3	25	81	15	70	45	1	1	51	1.20
160123--160185	32	2.0	32	90	0	99	39	6	7	46	1.59
161842--161950	57	1.9	57	100	0	218	30	12	15	41	1.85
162347--162679	75	4.4	75	82	3	366	42	11	13	33	1.79
162347--162680	150	2.2	150	87	2	465	41	11	13	33	1.79
162654--162718	23	2.8	23	92	0	103	36	13	15	33	1.87
162662--162725	23	2.8	23	90	0	74	37	15	12	34	1.85
162775--162822	23	2.1	23	92	3	80	39	18	10	31	1.85
162677--162920	97	2.5	98	84	6	341	40	13	12	33	1.83
162589--163041	218	2.1	219	87	1	649	39	13	13	33	1.83
162881--162948	23	2.9	23	80	2	73	38	19	5	36	1.76
162775--163064	121	2.4	121	88	0	438	40	14	11	33	1.82
163000--163087	23	3.8	23	89	0	140	36	19	11	32	1.87
165187--165224	20	1.9	20	88	0	58	21	26	10	42	1.85
166489--166555	29	2.3	30	80	12	77	40	5	16	37	1.73
172189--172253	27	2.5	25	76	9	67	55	1	10	32	1.44

Tables:   1

The End!