genome.fa.s5931.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005931.1 Hibiscus syriacus cultivar Beakdansim tig00013921_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50828

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3084--3115	16	1.9	16	93	6	55	81	0	18	0	0.70
3578--3639	32	1.9	32	83	6	81	46	20	14	17	1.83
8329--8477	45	3.3	45	90	0	226	25	22	19	32	1.98
8374--8845	122	3.9	123	89	2	684	26	21	18	32	1.97
8230--8599	167	2.2	167	92	0	614	25	23	18	31	1.97
8502--8599	45	2.2	45	83	3	117	25	24	17	32	1.97
8628--8723	46	2.1	46	94	0	165	30	21	18	29	1.97
8749--8889	47	3.0	47	89	5	223	29	22	17	30	1.97
8374--8850	245	2.0	243	88	4	710	26	21	18	32	1.97
9406--9436	16	1.9	16	100	0	62	32	9	25	32	1.88
10362--10390	2	15.0	2	92	7	51	48	0	0	51	1.00
12277--12344	26	2.6	27	84	15	90	38	7	0	54	1.28
12801--12863	29	2.1	30	94	2	110	41	4	7	46	1.54
16345--16399	6	9.7	6	90	5	80	12	0	0	87	0.55
16351--16398	22	2.2	21	96	3	87	12	0	0	87	0.54
16345--16399	28	2.0	26	93	6	92	12	0	0	87	0.55
25140--25207	30	2.3	30	89	5	102	30	10	38	20	1.86
25265--25362	6	14.4	7	76	18	50	53	0	0	46	1.00
25314--25364	2	26.5	2	76	7	52	49	0	0	50	1.00
26066--26107	19	2.2	19	95	0	75	52	11	4	30	1.59
27046--27086	20	2.0	21	86	13	59	75	0	2	21	0.92
27142--27185	19	2.4	18	84	3	52	75	2	4	18	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27768--27894	64	2.0	65	89	7	197	56	13	0	29	1.43
27843--27890	25	2.0	24	83	4	60	60	14	0	25	1.34
27870--27931	32	1.9	32	84	12	83	62	11	0	25	1.28
27960--27995	18	2.0	18	100	0	72	50	0	5	44	1.25
32954--33510	279	2.0	280	81	7	657	40	16	12	30	1.86
36447--36539	36	2.6	36	91	0	141	39	22	17	20	1.92
38909--38978	28	2.5	28	95	0	122	21	37	22	18	1.94
39147--39217	24	2.9	25	89	2	99	33	26	11	28	1.91
39263--39308	19	2.4	19	85	0	65	54	4	15	26	1.59
39365--39398	17	1.9	17	88	5	50	38	0	5	55	1.24
39443--39486	21	2.1	21	91	0	70	29	0	15	54	1.42
39464--39571	44	2.3	48	82	9	134	38	0	10	50	1.36
39918--39943	4	6.5	4	100	0	52	23	0	23	53	1.46
39986--40046	17	3.4	17	78	14	68	44	0	8	47	1.33
39986--40043	20	3.0	20	76	14	59	43	0	8	48	1.34
40238--40316	29	2.8	28	74	16	74	51	6	1	40	1.35
42027--42087	22	2.8	22	84	0	77	29	21	26	22	1.99
42606--42647	21	2.0	21	85	0	57	23	23	26	26	2.00
46065--46168	36	2.7	39	81	13	135	50	11	0	37	1.39
46178--46217	21	1.9	21	100	0	80	57	15	0	27	1.38
46269--46302	17	1.9	18	94	5	61	61	2	0	35	1.11
46331--46379	25	2.0	24	88	7	73	2	38	0	59	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46515--46580	12	5.5	12	72	13	64	39	12	22	25	1.89
46500--46586	24	3.7	24	96	1	158	37	13	22	25	1.91
46672--46746	28	2.6	28	82	2	96	17	29	34	18	1.94
50551--50601	20	2.5	20	96	0	93	45	9	23	21	1.82

Tables:   1

The End!