Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005932.1 Hibiscus syriacus cultivar Beakdansim tig00013922_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  123337

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34--68
17
2.0
18
88
5
54
42
5
0
51
1.25
7109--7199
42
2.1
43
87
2
130
35
5
4
54
1.43
13304--13342
20
2.0
20
85
10
53
46
12
0
41
1.42
13716--13784
31
2.2
31
92
5
113
52
4
2
40
1.36
13835--13868
16
2.1
16
88
0
50
47
0
2
50
1.16
16186--16223
19
2.0
19
90
10
60
31
26
2
39
1.70
20304--20372
23
3.0
23
84
0
102
30
26
26
17
1.97
20463--20513
20
2.5
20
96
0
93
37
17
17
27
1.93
21786--21820
18
1.9
18
100
0
70
22
25
17
34
1.96
26057--26112
26
2.2
26
80
6
60
17
16
16
50
1.79
26520--26555
15
2.4
15
95
0
63
47
0
0
52
1.00
26519--26560
15
3.0
14
86
10
59
50
0
0
50
1.00
26977--27021
13
3.4
13
80
17
56
44
8
0
46
1.34
29056--29300
122
2.0
122
99
0
481
44
17
11
27
1.82
48148--48172
6
4.2
6
100
0
50
36
32
0
32
1.58
48169--48199
6
5.2
6
100
0
62
35
48
16
0
1.46
53359--53418
26
2.3
26
94
0
102
8
35
18
38
1.81
57113--57157
23
2.0
23
90
0
72
24
26
26
22
2.00
57125--57437
147
2.1
149
93
3
535
34
21
17
26
1.96
57984--58031
2
24.0
2
100
0
96
50
0
0
50
1.00
58221--58246
2
13.0
2
100
0
52
50
0
0
50
1.00
58373--58407
18
1.9
18
88
11
54
22
17
5
54
1.64
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58899--59059
64
2.5
63
85
8
200
26
21
18
33
1.96
62361--62662
149
2.0
149
94
1
536
35
20
17
26
1.95
63209--63234
2
13.0
2
100
0
52
50
0
0
50
1.00
63568--63602
18
1.9
18
88
11
54
22
17
5
54
1.64
64082--64218
64
2.1
68
89
8
212
28
18
16
35
1.93
64094--64236
64
2.2
64
86
8
193
27
21
16
34
1.95
65470--65499
13
2.4
13
94
5
53
40
0
16
43
1.48
66857--66900
22
2.0
22
86
4
61
50
11
20
18
1.77
70728--70765
18
2.1
18
85
9
51
5
31
13
50
1.63
71140--71205
3
22.0
3
100
0
132
33
0
0
66
0.92
75168--75224
30
1.9
30
100
0
114
36
3
14
45
1.61
77971--78052
30
2.7
30
94
0
137
15
6
60
17
1.54
77977--78052
15
5.1
15
75
0
71
17
6
59
17
1.58
78016--78143
60
2.1
60
80
5
143
18
6
60
14
1.54
78061--78143
30
2.8
29
76
7
85
20
6
61
12
1.51
77989--78112
45
2.8
45
78
0
122
16
6
61
15
1.54
85155--85506
176
2.0
176
99
0
695
21
19
18
41
1.91
86101--86142
11
3.8
11
81
6
50
69
2
0
28
1.01
98310--98393
29
2.9
29
96
0
159
23
15
13
47
1.80
106562--106609
24
2.0
24
95
0
87
18
4
4
72
1.17
109979--110009
2
15.5
2
93
0
53
48
3
0
48
1.17
111825--111930
50
2.1
50
89
0
158
22
16
23
37
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
112419--112468
21
2.5
21
81
9
61
34
0
6
60
1.21
114225--114250
2
13.0
2
100
0
52
50
0
0
50
1.00
114618--114694
24
3.0
26
90
7
106
40
0
1
58
1.06
114618--114683
3
22.0
3
80
11
73
37
0
1
60
1.06
115476--115504
13
2.2
13
100
0
58
0
31
62
6
1.22
117029--117080
7
6.9
7
79
16
59
26
0
0
73
0.84
117026--117082
16
3.3
16
79
20
62
26
0
0
73
0.83
117033--117085
13
4.1
14
85
9
69
26
0
0
73
0.83
117026--117085
20
3.2
20
76
23
67
26
0
0
73
0.84
117029--117080
23
2.3
22
87
9
77
26
0
0
73
0.84
121323--121348
2
13.0
2
100
0
52
50
0
0
50
1.00

Tables:   1

The End!