Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01005933.1 Hibiscus syriacus cultivar Beakdansim tig00013923_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 171679
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.33
Found at i:3582 original size:22 final size:22
Alignment explanation
Indices: 3557--3602 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
3547 AGTTTAAAAT
*
3557 AGGGAATCGATTCCCCTGCTAC
1 AGGGAACCGATTCCCCTGCTAC
3579 AGGGAACCGATTCCCCTGCTAC
1 AGGGAACCGATTCCCCTGCTAC
3601 AG
1 AG
3603 TACTGCTACA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.24, C:0.33, G:0.24, T:0.20
Consensus pattern (22 bp):
AGGGAACCGATTCCCCTGCTAC
Found at i:4175 original size:21 final size:20
Alignment explanation
Indices: 4104--4186 Score: 121
Period size: 21 Copynumber: 4.0 Consensus size: 20
4094 CATATGAAAT
*
4104 TTGTCCCGAAGGACCTTTGAA
1 TTGTCCCGAAGGACCTATG-A
4125 TATGTCCCGAAGGACCTATGA
1 T-TGTCCCGAAGGACCTATGA
4146 TTGTCCCGAAGGACCTATGA
1 TTGTCCCGAAGGACCTATGA
*
4166 GTTATCCCGAAGGACCTATGA
1 -TTGTCCCGAAGGACCTATGA
4187 AACCCTCGAC
Statistics
Matches: 58, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
20 19 0.33
21 22 0.38
22 17 0.29
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (20 bp):
TTGTCCCGAAGGACCTATGA
Found at i:10355 original size:22 final size:22
Alignment explanation
Indices: 10330--10375 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
10320 GTTTACAAAT
*
10330 AGGGAATCGATTCCCCTGCTAC
1 AGGGAACCGATTCCCCTGCTAC
*
10352 AGGGAACCGGTTCCCCTGCTAC
1 AGGGAACCGATTCCCCTGCTAC
10374 AG
1 AG
10376 TACTGCTACA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.22, C:0.33, G:0.26, T:0.20
Consensus pattern (22 bp):
AGGGAACCGATTCCCCTGCTAC
Found at i:10923 original size:21 final size:21
Alignment explanation
Indices: 10874--10957 Score: 123
Period size: 21 Copynumber: 4.0 Consensus size: 21
10864 CATATGAAAT
* *
10874 TTGTCCCGAAGGACCTTTGAA
1 TTGTCCCGAAGGACCTATGAG
10895 TATGTCCCGAAGGACCTATGAG
1 T-TGTCCCGAAGGACCTATGAG
*
10917 TTGTCCCGAAAGACCTATGAG
1 TTGTCCCGAAGGACCTATGAG
*
10938 TTATCCCGAAGGACCTATGA
1 TTGTCCCGAAGGACCTATGA
10958 AACCCTCGAC
Statistics
Matches: 57, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
21 38 0.67
22 19 0.33
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (21 bp):
TTGTCCCGAAGGACCTATGAG
Found at i:10955 original size:42 final size:43
Alignment explanation
Indices: 10874--10957 Score: 125
Period size: 43 Copynumber: 2.0 Consensus size: 43
10864 CATATGAAAT
* * *
10874 TTGTCCCGAAGGACCTTTGAATATGTCCCGAAGGACCTATGAG
1 TTGTCCCGAAAGACCTATGAATATATCCCGAAGGACCTATGAG
*
10917 TTGTCCCGAAAGACCTATGAGT-TATCCCGAAGGACCTATGA
1 TTGTCCCGAAAGACCTATGAATATATCCCGAAGGACCTATGA
10958 AACCCTCGAC
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
42 18 0.49
43 19 0.51
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (43 bp):
TTGTCCCGAAAGACCTATGAATATATCCCGAAGGACCTATGAG
Found at i:19890 original size:3 final size:3
Alignment explanation
Indices: 19875--19908 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
19865 TCAATTCATC
*
19875 AAG AAG GAG AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
19909 TGATGATGAG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:22422 original size:19 final size:19
Alignment explanation
Indices: 22391--22428 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
22381 TCCATTAGCA
22391 TGCATGTGATATTATTATT
1 TGCATGTGATATTATTATT
22410 TGCAT-TGATTATTATTATT
1 TGCATGTGA-TATTATTATT
22429 ATTGTTGTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 3 0.17
19 15 0.83
ACGTcount: A:0.26, C:0.05, G:0.13, T:0.55
Consensus pattern (19 bp):
TGCATGTGATATTATTATT
Found at i:22599 original size:3 final size:3
Alignment explanation
Indices: 22593--22646 Score: 108
Period size: 3 Copynumber: 18.0 Consensus size: 3
22583 AAAAGCATGC
22593 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
22641 ATT ATT
1 ATT ATT
22647 GTTGTTGTTG
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 51 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:24177 original size:21 final size:21
Alignment explanation
Indices: 24139--24180 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
24129 AGAAAAGAAC
*
24139 CGATCCTTTTGGTGAAGGGAT
1 CGATCCTTTTGGTAAAGGGAT
24160 CGATCC-TTTGGTCAAAGGGAT
1 CGATCCTTTTGGT-AAAGGGAT
24181 TGATTGTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.21, C:0.17, G:0.31, T:0.31
Consensus pattern (21 bp):
CGATCCTTTTGGTAAAGGGAT
Found at i:24751 original size:8 final size:9
Alignment explanation
Indices: 24738--24770 Score: 50
Period size: 10 Copynumber: 3.7 Consensus size: 9
24728 TTAGGAATCA
24738 ATTATA-AT
1 ATTATATAT
24746 ATTATATAT
1 ATTATATAT
24755 ATATATATAT
1 AT-TATATAT
24765 ATTATA
1 ATTATA
24771 GTTAATGATA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
8 6 0.26
9 8 0.35
10 9 0.39
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (9 bp):
ATTATATAT
Found at i:26031 original size:2 final size:2
Alignment explanation
Indices: 26024--26051 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
26014 TAGCTGTAGA
26024 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
26052 TTTGAACCTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:28276 original size:31 final size:31
Alignment explanation
Indices: 28199--28282 Score: 87
Period size: 31 Copynumber: 2.7 Consensus size: 31
28189 AAATGATTAC
*
28199 AAAATGGTCATTAAATTTTATCAAACTCTTAT
1 AAAATGGTCATTAAA-CTTATCAAACTCTTAT
* * ** *
28231 AGAATGGTCCTTAAACTTATTGAACTGTTAT
1 AAAATGGTCATTAAACTTATCAAACTCTTAT
* *
28262 AAAATTGTCATTAAACGTATC
1 AAAATGGTCATTAAACTTATC
28283 GAAATTTATT
Statistics
Matches: 41, Mismatches: 11, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
31 28 0.68
32 13 0.32
ACGTcount: A:0.38, C:0.13, G:0.11, T:0.38
Consensus pattern (31 bp):
AAAATGGTCATTAAACTTATCAAACTCTTAT
Found at i:36963 original size:53 final size:53
Alignment explanation
Indices: 36885--36987 Score: 197
Period size: 53 Copynumber: 1.9 Consensus size: 53
36875 GGTTCTTCGC
36885 CTCCTGCCACTATTGTGACCACCAATTCCAAGTATTTTTTTGTCAAGTTTCTT
1 CTCCTGCCACTATTGTGACCACCAATTCCAAGTATTTTTTTGTCAAGTTTCTT
*
36938 CTCCTGCCACTATTGTGACCGCCAATTCCAAGTATTTTTTTGTCAAGTTT
1 CTCCTGCCACTATTGTGACCACCAATTCCAAGTATTTTTTTGTCAAGTTT
36988 TTATAATTAG
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 49 1.00
ACGTcount: A:0.20, C:0.26, G:0.13, T:0.41
Consensus pattern (53 bp):
CTCCTGCCACTATTGTGACCACCAATTCCAAGTATTTTTTTGTCAAGTTTCTT
Found at i:44913 original size:10 final size:10
Alignment explanation
Indices: 44888--44928 Score: 57
Period size: 10 Copynumber: 4.1 Consensus size: 10
44878 GAAGCTCTAA
44888 ACTCTTCCACT
1 ACTCTTCCA-T
44899 -CTCTTCCAT
1 ACTCTTCCAT
*
44908 ATTCTTCCAT
1 ACTCTTCCAT
44918 ACTCTTCCAT
1 ACTCTTCCAT
44928 A
1 A
44929 AGGTTCCACA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
9 1 0.04
10 26 0.96
ACGTcount: A:0.20, C:0.39, G:0.00, T:0.41
Consensus pattern (10 bp):
ACTCTTCCAT
Found at i:48202 original size:18 final size:18
Alignment explanation
Indices: 48148--48202 Score: 56
Period size: 18 Copynumber: 2.9 Consensus size: 18
48138 ATCCCGAATG
* *
48148 ACCACTATGTCCCGAAGG
1 ACCACTATGTCTCGAAGA
* *
48166 ACCACTAATTATTTCGAAGA
1 ACCACT-A-TGTCTCGAAGA
48186 ACCACTATGTCTCGAAG
1 ACCACTATGTCTCGAAG
48203 GACAATTGTA
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
18 14 0.48
19 2 0.07
20 13 0.45
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.24
Consensus pattern (18 bp):
ACCACTATGTCTCGAAGA
Found at i:48485 original size:24 final size:21
Alignment explanation
Indices: 48429--48486 Score: 55
Period size: 24 Copynumber: 2.5 Consensus size: 21
48419 ATATATTATC
48429 ATCACTTTTCATATAAACATGT
1 ATCAC-TTTCATATAAACATGT
48451 ATTTCAC-TTCATATACACACATGT
1 A--TCACTTTCATATA-A-ACATGT
48475 GATCACTTTCAT
1 -ATCACTTTCAT
48487 TATTTCACAT
Statistics
Matches: 30, Mismatches: 0, Indels: 10
0.75 0.00 0.25
Matches are distributed among these distances:
22 9 0.30
23 5 0.17
24 15 0.50
25 1 0.03
ACGTcount: A:0.33, C:0.22, G:0.05, T:0.40
Consensus pattern (21 bp):
ATCACTTTCATATAAACATGT
Found at i:69996 original size:31 final size:31
Alignment explanation
Indices: 69843--69983 Score: 255
Period size: 31 Copynumber: 4.5 Consensus size: 31
69833 GGGTCGAGGG
69843 TTACCTATGTTCTTCGGGACATATGGACTGT
1 TTACCTATGTTCTTCGGGACATATGGACTGT
69874 TTACCTATGTTCTTCGGGACATATGGACTGT
1 TTACCTATGTTCTTCGGGACATATGGACTGT
69905 TTACCTATGTTCTTCGGGACATATGGACTGT
1 TTACCTATGTTCTTCGGGACATATGGACTGT
* *
69936 TTACCTATGTTCTTTGGGACATATGGACTGA
1 TTACCTATGTTCTTCGGGACATATGGACTGT
*
69967 TTACCTAGGTTCTTCGG
1 TTACCTATGTTCTTCGG
69984 AATGTATGGA
Statistics
Matches: 106, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 106 1.00
ACGTcount: A:0.19, C:0.19, G:0.23, T:0.39
Consensus pattern (31 bp):
TTACCTATGTTCTTCGGGACATATGGACTGT
Found at i:74282 original size:31 final size:31
Alignment explanation
Indices: 74129--74267 Score: 242
Period size: 31 Copynumber: 4.5 Consensus size: 31
74119 GGGTCGAGGG
74129 TTACCTATGTTCTTCGGGACATATGGACTGT
1 TTACCTATGTTCTTCGGGACATATGGACTGT
74160 TTACCTATGTTCTTCGGGACATATGGACTGT
1 TTACCTATGTTCTTCGGGACATATGGACTGT
*
74191 TTACCTATGTTCTTCGGGACATATGAACTGT
1 TTACCTATGTTCTTCGGGACATATGGACTGT
* *
74222 TTACCTATGTTCTTTGGGACATATGGACTGA
1 TTACCTATGTTCTTCGGGACATATGGACTGT
*
74253 TTACCTAGGTTCTTC
1 TTACCTATGTTCTTC
74268 AGAATCTATG
Statistics
Matches: 102, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 102 1.00
ACGTcount: A:0.20, C:0.19, G:0.21, T:0.40
Consensus pattern (31 bp):
TTACCTATGTTCTTCGGGACATATGGACTGT
Found at i:79687 original size:20 final size:21
Alignment explanation
Indices: 79635--79695 Score: 70
Period size: 20 Copynumber: 2.9 Consensus size: 21
79625 TTCCCCTGTG
79635 GGGGGAATCGGTTCCCCTTCAAA
1 GGGGGAATCGGTT-CCC-TCAAA
*
79658 GGGGGAATCGGTTCCCTC-AT
1 GGGGGAATCGGTTCCCTCAAA
* *
79678 GGGGGTATCGATTCCCTC
1 GGGGGAATCGGTTCCCTC
79696 TGCACCAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
20 17 0.49
21 2 0.06
22 3 0.09
23 13 0.37
ACGTcount: A:0.16, C:0.26, G:0.33, T:0.25
Consensus pattern (21 bp):
GGGGGAATCGGTTCCCTCAAA
Found at i:89845 original size:18 final size:19
Alignment explanation
Indices: 89824--89865 Score: 70
Period size: 18 Copynumber: 2.3 Consensus size: 19
89814 GGTAAAAAAT
89824 ATTAAAATAA-TAAAAGCA
1 ATTAAAATAAGTAAAAGCA
89842 ATT-AAATAAGTAAAAGCA
1 ATTAAAATAAGTAAAAGCA
89860 ATTAAA
1 ATTAAA
89866 GTAAAAATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 6 0.27
18 14 0.64
19 2 0.09
ACGTcount: A:0.64, C:0.05, G:0.07, T:0.24
Consensus pattern (19 bp):
ATTAAAATAAGTAAAAGCA
Found at i:95390 original size:24 final size:24
Alignment explanation
Indices: 95360--95414 Score: 110
Period size: 24 Copynumber: 2.3 Consensus size: 24
95350 AGAAAATATT
95360 AAAATAATAAAAGCGATTAAAGTA
1 AAAATAATAAAAGCGATTAAAGTA
95384 AAAATAATAAAAGCGATTAAAGTA
1 AAAATAATAAAAGCGATTAAAGTA
95408 AAAATAA
1 AAAATAA
95415 GAAGATGAAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.65, C:0.04, G:0.11, T:0.20
Consensus pattern (24 bp):
AAAATAATAAAAGCGATTAAAGTA
Found at i:99528 original size:31 final size:31
Alignment explanation
Indices: 99467--99533 Score: 91
Period size: 33 Copynumber: 2.1 Consensus size: 31
99457 GCCAGAAAAA
*
99467 AAAAAGAATATACATCTTAACATATAATTTTAT
1 AAAAAGAAAATACATCTTAACA-ATAATTTT-T
*
99500 AAAAATAAAATACATCTTAAC-ATAATTTTT
1 AAAAAGAAAATACATCTTAACAATAATTTTT
99530 AAAA
1 AAAA
99534 TTTTTATGTT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
30 5 0.16
31 8 0.25
33 19 0.59
ACGTcount: A:0.55, C:0.09, G:0.01, T:0.34
Consensus pattern (31 bp):
AAAAAGAAAATACATCTTAACAATAATTTTT
Found at i:101559 original size:17 final size:18
Alignment explanation
Indices: 101537--101572 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
101527 CTAGATTCTC
101537 TAAAA-TTAAATAAATTA
1 TAAAATTTAAATAAATTA
*
101554 TAAAATTTAAATGAATTA
1 TAAAATTTAAATAAATTA
101572 T
1 T
101573 GATTTAATCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 5 0.29
18 12 0.71
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (18 bp):
TAAAATTTAAATAAATTA
Found at i:105402 original size:53 final size:51
Alignment explanation
Indices: 105264--105402 Score: 156
Period size: 52 Copynumber: 2.6 Consensus size: 51
105254 CTTTGTTTTG
* ***
105264 AATATTTATA-GAAATATTATAATGTTGAATATTAAATTTTATTTTATTTTTA
1 AATATTTATATG-AATATTAT-ATGTTGAATATTGAATTTTATTTTATTAAAA
*
105316 AATATTTATATGAATATTATATCGTTGACTATTGAATTTTATTTT-TTCAAAAA
1 AATATTTATATGAATATTATAT-GTTGAATATTGAATTTTATTTTATT--AAAA
*
105369 AATATTTATATGAATATTATACTATTGAATATTG
1 AATATTTATATGAATATTATA-TGTTGAATATTG
105403 TCATGTGCAA
Statistics
Matches: 75, Mismatches: 7, Indels: 9
0.82 0.08 0.10
Matches are distributed among these distances:
51 4 0.05
52 38 0.51
53 32 0.43
54 1 0.01
ACGTcount: A:0.40, C:0.03, G:0.07, T:0.50
Consensus pattern (51 bp):
AATATTTATATGAATATTATATGTTGAATATTGAATTTTATTTTATTAAAA
Found at i:106452 original size:26 final size:28
Alignment explanation
Indices: 106407--106476 Score: 74
Period size: 27 Copynumber: 2.5 Consensus size: 28
106397 AATTTCATAG
106407 AAATATATTA-TTAAGTTA-TTAATAAT
1 AAATATATTATTTAAGTTATTTAATAAT
* *
106433 AAATATATTATTTATG-TATTTAATATT
1 AAATATATTATTTAAGTTATTTAATAAT
*
106460 AATATAATAATATTTAA
1 AA-AT-ATATTATTTAA
106477 TAAAGATATT
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
26 12 0.33
27 13 0.36
28 2 0.06
29 9 0.25
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (28 bp):
AAATATATTATTTAAGTTATTTAATAAT
Found at i:106528 original size:34 final size:37
Alignment explanation
Indices: 106455--106530 Score: 88
Period size: 34 Copynumber: 2.1 Consensus size: 37
106445 TATGTATTTA
*
106455 ATATTAATATAATAATATTTAATAAAGATATTTAAAAT
1 ATATTAATATAATAATATTT-ATAAAGATATATAAAAT
*
106493 ATATTAAT-TAATAAT-TTT-TAAA-ATATAATATAAT
1 ATATTAATATAATAATATTTATAAAGATAT-ATAAAAT
106527 ATAT
1 ATAT
106531 CTTACTCTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
33 4 0.11
34 13 0.37
36 3 0.09
37 7 0.20
38 8 0.23
ACGTcount: A:0.54, C:0.00, G:0.01, T:0.45
Consensus pattern (37 bp):
ATATTAATATAATAATATTTATAAAGATATATAAAAT
Found at i:109775 original size:2 final size:2
Alignment explanation
Indices: 109768--109795 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
109758 TGGTTAAAAT
109768 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
109796 ACTCATAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:110694 original size:20 final size:19
Alignment explanation
Indices: 110665--110702 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 19
110655 ATAGTTTTAG
110665 GGTTTTAATTAGTGGTTTT
1 GGTTTTAATTAGTGGTTTT
110684 GGTTATTAATTAGTGGTTT
1 GGTT-TTAATTAGTGGTTT
110703 AAGTTATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.18, C:0.00, G:0.26, T:0.55
Consensus pattern (19 bp):
GGTTTTAATTAGTGGTTTT
Found at i:110708 original size:20 final size:20
Alignment explanation
Indices: 110669--110709 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
110659 TTTTAGGGTT
**
110669 TTAATTAGTGGTTTTGGTTA
1 TTAATTAGTGGTTTAAGTTA
110689 TTAATTAGTGGTTTAAGTTA
1 TTAATTAGTGGTTTAAGTTA
110709 T
1 T
110710 ATTTGTACGG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.24, C:0.00, G:0.22, T:0.54
Consensus pattern (20 bp):
TTAATTAGTGGTTTAAGTTA
Found at i:113946 original size:83 final size:82
Alignment explanation
Indices: 113795--114140 Score: 358
Period size: 83 Copynumber: 4.2 Consensus size: 82
113785 TGACAAAAAA
* ** * * * *
113795 TCTCTGAATAATAATGGAAAACGTTGTTCCTGAAACG-CTCATTTCATTTTGA-ATGAGATAAAA
1 TCTCTGAATAATAATGGAAAACATT-TTCCCCAAAAGACACCTTTCATTTTGATA-G-GATGAAA
113858 CACTCTAACATGGCAGAGAT
63 CACTCTAACATGGCAGAGAT
* * * * * *
113878 TCTCTGAATAATAATGGAAAACACTTTCCTCGAAAGACGCCTTTTATTTTAGATAGGATGAAATA
1 TCTCTGAATAATAATGGAAAACATTTTCCCCAAAAGACACCTTTCATTTT-GATAGGATGAAACA
* *
113943 CTCTGACATGGTAGAGAT
65 CTCTAACATGGCAGAGAT
* ** * * *
113961 TCTTTGAATAATAATGGAAAATGTTTTCCCCAAAACACACCTTTCATTTCGAATGGGATGAAACA
1 TCTCTGAATAATAATGGAAAACATTTTCCCCAAAAGACACCTTTCATTTTG-ATAGGATGAAACA
*
114026 CTCTAACATGCCAGAGAT
65 CTCTAACATGGCAGAGAT
* * * *
114044 TCTCTGAATAATAATGGAAAACA-TTTCCCCAAAATG-CACCATTCATTTCGGATAGAATGGAAC
1 TCTCTGAATAATAATGGAAAACATTTTCCCCAAAA-GACACCTTTCATTT-TGATAGGATGAAAC
*
114107 ACTCTAACATGGCTGAGAT
64 ACTCTAACATGGCAGAGAT
114126 TCTCTGAATAATAAT
1 TCTCTGAATAATAAT
114141 AAAAAACGCT
Statistics
Matches: 219, Mismatches: 38, Indels: 13
0.81 0.14 0.05
Matches are distributed among these distances:
82 72 0.33
83 143 0.65
84 3 0.01
85 1 0.00
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.30
Consensus pattern (82 bp):
TCTCTGAATAATAATGGAAAACATTTTCCCCAAAAGACACCTTTCATTTTGATAGGATGAAACAC
TCTAACATGGCAGAGAT
Found at i:114221 original size:83 final size:84
Alignment explanation
Indices: 114121--114317 Score: 256
Period size: 84 Copynumber: 2.4 Consensus size: 84
114111 TAACATGGCT
*** *
114121 GAGATTCTCTGAATAATAAT-AAAAAACGCTTCTCTCGA-AACGTGTCTTTCATTTC-AGATGTG
1 GAGATTCTCTGAATAATAATGAAAAAACGCTTCTC-CGAGAACGCACCTTTCATTTCGA-ATGGG
114183 ATAGATCACTATTATAATCCA
64 ATAGATCACTATTATAATCCA
* * * * *
114204 GAGATTCTCTAAATAATAATGAAAAAATGTTTCTCCTAGAATGCACCTTTCATTTCGAATGGGAT
1 GAGATTCTCTGAATAATAATGAAAAAACGCTTCTCCGAGAACGCACCTTTCATTTCGAATGGGAT
* *
114269 GGATCACTATTATAATCTA
66 AGATCACTATTATAATCCA
114288 GAGATTCTCTGAATAATAATGAAAAAACGC
1 GAGATTCTCTGAATAATAATGAAAAAACGC
114318 ATCCCCTGGA
Statistics
Matches: 97, Mismatches: 14, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
83 21 0.22
84 75 0.77
85 1 0.01
ACGTcount: A:0.37, C:0.16, G:0.14, T:0.32
Consensus pattern (84 bp):
GAGATTCTCTGAATAATAATGAAAAAACGCTTCTCCGAGAACGCACCTTTCATTTCGAATGGGAT
AGATCACTATTATAATCCA
Found at i:114274 original size:84 final size:84
Alignment explanation
Indices: 113795--114314 Score: 338
Period size: 83 Copynumber: 6.3 Consensus size: 84
113785 TGACAAAAAA
* * ** * * * * **
113795 TCTCTGAATAATAATG-GAAAACGTTGT-TCCTGAAACGCTCATTTCATTTTGAATGAGATAAAA
1 TCTCTGAATAATAATGAAAAAATGTT-TCTCCCAAAACGCACCTTTCATTTCGAATGGGATGGAA
*
113858 CACTCTAACATGGCAGAGAT
65 CACTCTAACATGCCAGAGAT
* * * * * *
113878 TCTCTGAATAATAATGGAAAACA-CTTTC-CTCGAAAGACG--CCTTTTATTT-TAGATAGGATG
1 TCTCTGAATAATAAT-GAAAAAATGTTTCTC-CCAAA-ACGCACCTTTCATTTCGA-ATGGGATG
* * * **
113938 AAATACTCTGACATGGTAGAGAT
62 GAACACTCTAACATGCCAGAGAT
* * * *
113961 TCTTTGAATAATAATG-GAAAATGTTT-TCCCCAAAACACACCTTTCATTTCGAATGGGATGAAA
1 TCTCTGAATAATAATGAAAAAATGTTTCT-CCCAAAACGCACCTTTCATTTCGAATGGGATGGAA
114024 CACTCTAACATGCCAGAGAT
65 CACTCTAACATGCCAGAGAT
* * * * * *
114044 TCTCTGAATAATAATGGAAAACA--TTTC-CCCAAAATGCACCATTCATTTCGGATAGAATGGAA
1 TCTCTGAATAATAAT-GAAAAAATGTTTCTCCCAAAACGCACCTTTCATTTCGAATGGGATGGAA
* *
114106 CACTCTAACATGGCTGAGAT
65 CACTCTAACATGCCAGAGAT
* * * * *** * * *
114126 TCTCTGAATAATAAT-AAAAAACGCTTCTCTCGAAACGTGTCTTTCATTTC-AGATGTGATAGAT
1 TCTCTGAATAATAATGAAAAAATGTTTCTCCCAAAACGCACCTTTCATTTCGA-ATGGGATGGAA
*
114189 CACTATTATA-AT-CCAGAGAT
65 CACT-CTA-ACATGCCAGAGAT
* * * * *
114209 TCTCTAAATAATAATGAAAAAATGTTTCTCCTAGAATGCACCTTTCATTTCGAATGGGATGGATC
1 TCTCTGAATAATAATGAAAAAATGTTTCTCCCAAAACGCACCTTTCATTTCGAATGGGATGGAAC
* *
114274 ACTATTATA-AT-CTAGAGAT
66 ACT-CTA-ACATGCCAGAGAT
114293 TCTCTGAATAATAATGAAAAAA
1 TCTCTGAATAATAATGAAAAAA
114315 CGCATCCCCT
Statistics
Matches: 342, Mismatches: 72, Indels: 45
0.75 0.16 0.10
Matches are distributed among these distances:
80 5 0.01
81 5 0.01
82 73 0.21
83 162 0.47
84 86 0.25
85 11 0.03
ACGTcount: A:0.37, C:0.17, G:0.15, T:0.31
Consensus pattern (84 bp):
TCTCTGAATAATAATGAAAAAATGTTTCTCCCAAAACGCACCTTTCATTTCGAATGGGATGGAAC
ACTCTAACATGCCAGAGAT
Found at i:115749 original size:19 final size:20
Alignment explanation
Indices: 115727--115768 Score: 52
Period size: 19 Copynumber: 2.1 Consensus size: 20
115717 AATAAAATAA
115727 TAAAAAATT-TACTAAA-AAT
1 TAAAAAATTCTA-TAAACAAT
*
115746 TAAATAATTCTATAAACAAT
1 TAAAAAATTCTATAAACAAT
115766 TAA
1 TAA
115769 TCCTAGTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (20 bp):
TAAAAAATTCTATAAACAAT
Found at i:117423 original size:74 final size:69
Alignment explanation
Indices: 117330--117638 Score: 220
Period size: 74 Copynumber: 4.3 Consensus size: 69
117320 ATATATACAT
*
117330 ATTTTGAAACTACGTATATAATATATAGTTTTTAATAGTTTTTAAAACTATATAATATATAGTTT
1 ATTTTGAAAATA--TATATAATATATAGTTTTTAATA-TTTTTAAAACTATATAATATATAGTTT
117395 TAAAAAAGAC
63 T--AAAA-AC
* *
117405 ATTTTAGAAAATATATATAATATATAATTTTTAAAATCATTTTGAAAACT-TAT-ATATATAGTT
1 ATTTT-GAAAATATATATAATATATAGTTTTT--AAT-ATTTTTAAAACTATATAATATATAG-T
*
117468 TTTGAAAAC
61 TTTAAAAAC
* * * *
117477 ATTTTTGAAAACATATAT-AT-TATAGTTTTGAAAACATTTTTTTTGAAAACATATATATTATAT
1 A-TTTTGAAAATATATATAATATATAGTTTT---TA-A-TATTTTT-AAAAC-TATATAATATAT
*
117540 AGTTTTAAAATC
58 AGTTTTAAAAAC
* * * *
117552 ATTTTG-AAATTTATATAATATATAGTTGAATTT-TTTTTTTTGAAA-T-TATAATATATAGTTT
1 ATTTTGAAAATATATATAATATATAGTT---TTTAATATTTTTAAAACTATATAATATATAGTTT
*
117613 TGAAAAC
63 TAAAAAC
*
117620 ATTTTTGAAAATATTTATA
1 A-TTTTGAAAATATATATA
117639 TTTATAAGAC
Statistics
Matches: 190, Mismatches: 22, Indels: 49
0.73 0.08 0.19
Matches are distributed among these distances:
68 20 0.11
69 6 0.03
70 17 0.09
71 6 0.03
72 26 0.14
73 21 0.11
74 34 0.18
75 31 0.16
76 26 0.14
77 1 0.01
78 2 0.01
ACGTcount: A:0.42, C:0.04, G:0.07, T:0.47
Consensus pattern (69 bp):
ATTTTGAAAATATATATAATATATAGTTTTTAATATTTTTAAAACTATATAATATATAGTTTTAA
AAAC
Found at i:117446 original size:38 final size:36
Alignment explanation
Indices: 117330--117578 Score: 210
Period size: 35 Copynumber: 6.8 Consensus size: 36
117320 ATATATACAT
* *
117330 ATTTTGAAACTACGTATATAATATATAGTTTTTAATA-
1 ATTTTGAAA--ACATATATAATATATAGTTTTTAAAAC
* * *
117367 GTTTTTAAAAC-TATATAATATATAGTTTTAAAAAAGAC
1 ATTTTGAAAACATATATAATATATAGTTTT--TAAA-AC
* *
117405 ATTTTAGAAAATATATATAATATATAATTTTTAAAATC
1 ATTTT-GAAAACATATATAATATATAGTTTTTAAAA-C
117443 ATTTTGAAAAC-T-TAT-ATATATAGTTTTTGAAAAC
1 ATTTTGAAAACATATATAATATATAGTTTTT-AAAAC
*
117477 ATTTTTGAAAACATATAT-AT-TATAGTTTTGAAAAC
1 A-TTTTGAAAACATATATAATATATAGTTTTTAAAAC
*
117512 ATTTTTTTTGAAAACATATATATTATATAG-TTTTAAAATC
1 A----TTTTGAAAACATATATAATATATAGTTTTTAAAA-C
**
117552 ATTTTG-AAATTTATATAATATATAGTT
1 ATTTTGAAAACATATATAATATATAGTT
117579 GAATTTTTTT
Statistics
Matches: 177, Mismatches: 17, Indels: 37
0.77 0.07 0.16
Matches are distributed among these distances:
34 32 0.18
35 41 0.23
36 19 0.11
37 19 0.11
38 30 0.17
39 12 0.07
40 24 0.14
ACGTcount: A:0.43, C:0.04, G:0.07, T:0.45
Consensus pattern (36 bp):
ATTTTGAAAACATATATAATATATAGTTTTTAAAAC
Found at i:117483 original size:12 final size:12
Alignment explanation
Indices: 117466--117490 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
117456 ATATATATAG
117466 TTTTTGAAAACA
1 TTTTTGAAAACA
117478 TTTTTGAAAACA
1 TTTTTGAAAACA
117490 T
1 T
117491 ATATATTATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.08, G:0.08, T:0.44
Consensus pattern (12 bp):
TTTTTGAAAACA
Found at i:117494 original size:35 final size:35
Alignment explanation
Indices: 117419--117752 Score: 139
Period size: 35 Copynumber: 9.5 Consensus size: 35
117409 TAGAAAATAT
*
117419 ATATAATATATAATTTTT-AAAATCA-TTTTGAAAAC
1 ATAT-ATATATAGTTTTTGAAAA-CATTTTTGAAAAC
*
117454 TTATATATATAGTTTTTGAAAACATTTTTGAAAAC
1 ATATATATATAGTTTTTGAAAACATTTTTGAAAAC
117489 ATATATATTATAG-TTTTGAAAACATTTTTTTTGAAAAC
1 ATATATA-TATAGTTTTTGAAAACA---TTTTTGAAAAC
**
117527 ATATATATTATA-TAGTTTT-AAAATCA-TTTTGAAATTT
1 ATATATA-TATAGT--TTTTGAAAA-CATTTTTGAAA-AC
**** **
117564 ATATAATATATAG---TTGAATTTTTTTTTTTGAAATT
1 ATAT-ATATATAGTTTTTGAA--AACATTTTTGAAAAC
117599 ATA-ATATATAG-TTTTGAAAACATTTTTG-AAA-
1 ATATATATATAGTTTTTGAAAACATTTTTGAAAAC
* * *
117630 ATAT-T-TATA-TTTAT-AAGACA-TTTTGAAAAT
1 ATATATATATAGTTTTTGAAAACATTTTTGAAAAC
* * ***
117660 ATATAATATATA-TTTTTAAAAAATATTTTTGAAGTT
1 ATAT-ATATATAGTTTTT-GAAAACATTTTTGAAAAC
* * **
117696 ATATATTGTATATGTTTTTAAAAATGTTTTTGAAAATAC
1 ATATA-TATATA-GTTTTTGAAAACATTTTTG-AAA-AC
*
117735 GTATAATATATAGTTTTT
1 ATAT-ATATATAGTTTTT
117753 TTTTAAAAAA
Statistics
Matches: 236, Mismatches: 28, Indels: 67
0.71 0.08 0.20
Matches are distributed among these distances:
28 5 0.02
29 8 0.03
30 11 0.05
31 4 0.02
32 3 0.01
33 24 0.10
34 16 0.07
35 49 0.21
36 38 0.16
37 20 0.08
38 39 0.17
39 12 0.05
40 7 0.03
ACGTcount: A:0.41, C:0.03, G:0.07, T:0.49
Consensus pattern (35 bp):
ATATATATATAGTTTTTGAAAACATTTTTGAAAAC
Found at i:117632 original size:28 final size:26
Alignment explanation
Indices: 117601--117664 Score: 67
Period size: 28 Copynumber: 2.3 Consensus size: 26
117591 TTGAAATTAT
117601 AATATATAGTTT-TGAAAACATTTTTGAA
1 AATATATA-TTTAT-AAAACA-TTTTGAA
*
117629 AATATTTATATTTATAAGACATTTTGAA
1 AATA--TATATTTATAAAACATTTTGAA
117657 AATATATA
1 AATATATA
117665 ATATATATTT
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
26 4 0.12
28 15 0.47
29 8 0.25
30 5 0.16
ACGTcount: A:0.45, C:0.03, G:0.08, T:0.44
Consensus pattern (26 bp):
AATATATATTTATAAAACATTTTGAA
Found at i:117745 original size:37 final size:36
Alignment explanation
Indices: 117650--117752 Score: 109
Period size: 37 Copynumber: 2.8 Consensus size: 36
117640 TTATAAGACA
*
117650 TTTTGAAAATATATAATATATATTTTTAAAAAATAT
1 TTTTGAAAATATATAATATATGTTTTTAAAAAATAT
* ** *
117686 TTTTGAAGTTATATATTGTATATGTTTTT-AAAAATGT
1 TTTTGAA--AATATATAATATATGTTTTTAAAAAATAT
117723 TTTTGAAAATACGTATAATATATAGTTTTT
1 TTTTGAAAATA--TATAATATAT-GTTTTT
117753 TTTTAAAAAA
Statistics
Matches: 54, Mismatches: 8, Indels: 8
0.77 0.11 0.11
Matches are distributed among these distances:
35 3 0.06
36 7 0.13
37 22 0.41
38 22 0.41
ACGTcount: A:0.40, C:0.01, G:0.09, T:0.50
Consensus pattern (36 bp):
TTTTGAAAATATATAATATATGTTTTTAAAAAATAT
Found at i:117751 original size:38 final size:37
Alignment explanation
Indices: 117650--117752 Score: 120
Period size: 36 Copynumber: 2.8 Consensus size: 37
117640 TTATAAGACA
117650 TTTTGAAAATATATAATATATA-TTTTTAAAAAATAT
1 TTTTGAAAATATATAATATATAGTTTTTAAAAAATAT
** * * *
117686 TTTTGAAGTTATATATTGTATATGTTTTT-AAAAATGT
1 TTTTGAAAATATATAATATATA-GTTTTTAAAAAATAT
117723 TTTTGAAAATACGTATAATATATAGTTTTT
1 TTTTGAAAATA--TATAATATATAGTTTTT
117753 TTTTAAAAAA
Statistics
Matches: 54, Mismatches: 9, Indels: 6
0.78 0.13 0.09
Matches are distributed among these distances:
36 18 0.33
37 16 0.30
38 11 0.20
39 9 0.17
ACGTcount: A:0.40, C:0.01, G:0.09, T:0.50
Consensus pattern (37 bp):
TTTTGAAAATATATAATATATAGTTTTTAAAAAATAT
Found at i:117824 original size:3 final size:3
Alignment explanation
Indices: 117816--117870 Score: 101
Period size: 3 Copynumber: 18.0 Consensus size: 3
117806 TTTTATATAG
117816 ATT ATT ATT ATTT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
117862 ATT ATT ATT
1 ATT ATT ATT
117871 TCCTATTTAT
Statistics
Matches: 51, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
3 48 0.94
4 3 0.06
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:118939 original size:2 final size:2
Alignment explanation
Indices: 118927--118972 Score: 85
Period size: 2 Copynumber: 23.5 Consensus size: 2
118917 GTTTTAGTCC
118927 TA TA T- TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
118968 TA TA T
1 TA TA T
118973 TTTCCGAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 42 0.98
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:120969 original size:19 final size:19
Alignment explanation
Indices: 120945--120990 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
120935 ATTTAGACAT
120945 TTTGCATTTCGTTATTTTC
1 TTTGCATTTCGTTATTTTC
*
120964 TTTGCATTTTGTTATTTTC
1 TTTGCATTTCGTTATTTTC
*
120983 TTTACATT
1 TTTGCATT
120991 CACATTAACT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.13, C:0.13, G:0.09, T:0.65
Consensus pattern (19 bp):
TTTGCATTTCGTTATTTTC
Found at i:124607 original size:164 final size:164
Alignment explanation
Indices: 124337--125049 Score: 853
Period size: 164 Copynumber: 4.3 Consensus size: 164
124327 TGCAGCTTAG
* * * **
124337 CTCAAGGCCAGAAGGGCTACCTGCCACC-AAGACCTTTGAGTTCGACTACGCTCAGCTCCTAGGC
1 CTCAAGGCTAGAAGGGTTATCTGTTACCAAAGACCTTTGAGTTCGACTACGCTCAGCTCCTAGGC
* **
124401 ACATCATTTACAGAATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTTAAGTTCGATTAC
66 ACATCATTTGCAGAATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCCCAAGTTCGATTAC
124466 ACTCAGCTTCAAGGGCATAACATTTACAGCATAA
131 ACTCAGCTTCAAGGGCATAACATTTACAGCATAA
*
124500 CTCAAGGCTAGAAGGGTTATCTGTTAGCAAAGACCTTTGAGTTCGACTACGCTCAGCTCCTAGGC
1 CTCAAGGCTAGAAGGGTTATCTGTTACCAAAGACCTTTGAGTTCGACTACGCTCAGCTCCTAGGC
**
124565 ACATCATTTGCAGAATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTTAAGTTCGATTAC
66 ACATCATTTGCAGAATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCCCAAGTTCGATTAC
124630 ACTCAGCTTCAAGGGCATAACATTTACAGCATAA
131 ACTCAGCTTCAAGGGCATAACATTTACAGCATAA
* *
124664 CTCAAGGCTAGAAGGGTTATCTGTTAGCAAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGC
1 CTCAAGGCTAGAAGGGTTATCTGTTACCAAAGACCTTTGAGTTCGACTACGCTCAGCTCCTAGGC
* * * *
124729 ACATCATTTGTAGAATAGCTTAAGTCAAGAAGGGCTATCTGCCAAAGACCCCCGAGTTCGACTAC
66 ACATCATTTGCAGAATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCCCAAGTTCGATTAC
* * * * * * *
124794 GCTCAGCTCCAA-GGCACATCATTTGCAGAATAG
131 ACTCAGCTTCAAGGGCATAACATTTACAGCATAA
* * * * *** * * *
124827 CTTAAGTCAAGAAGGGCTATCTG---CCAAAGACCCCCGAGTTCGATTACACTCAGCTCCGAGGG
1 CTCAAGGCTAGAAGGGTTATCTGTTACCAAAGACCTTTGAGTTCGACTACGCTCAGCTCCTA-GG
* * * * * *
124889 CACATCA-TTGACAGCATAACTCAAGGCTAGAAGGGTTATCTGTGACCAAAAGACCCCCAAGTTC
65 CACATCATTTG-CAGAATAGCTTAAGTCGAGAAGGGCTATC--TG-CC-AAAGACCCCCAAGTTC
* * * * *
124953 GATTACACTCAGCTTCGAGGACATATCATTTGCAGCACAA
125 GATTACACTCAGCTTCAAGGGCATAACATTTACAGCATAA
* * * * * * *
124993 CTTAAGTCTAGAAGGGTTGTCTGTCACCAAAAGACCTTCGAGTTCGATTACACTCAG
1 CTCAAGGCTAGAAGGGTTATCTGTTACC-AAAGACCTTTGAGTTCGACTACGCTCAG
125050 TTCAGAGGCA
Statistics
Matches: 484, Mismatches: 54, Indels: 17
0.87 0.10 0.03
Matches are distributed among these distances:
160 32 0.07
161 31 0.06
163 59 0.12
164 269 0.56
165 29 0.06
166 36 0.07
169 2 0.00
170 26 0.05
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.24
Consensus pattern (164 bp):
CTCAAGGCTAGAAGGGTTATCTGTTACCAAAGACCTTTGAGTTCGACTACGCTCAGCTCCTAGGC
ACATCATTTGCAGAATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCCCAAGTTCGATTAC
ACTCAGCTTCAAGGGCATAACATTTACAGCATAA
Found at i:124635 original size:80 final size:80
Alignment explanation
Indices: 124346--125049 Score: 629
Period size: 80 Copynumber: 8.6 Consensus size: 80
124336 GCTCAAGGCC
* * * * * *
124346 AGAAGGGCTACCTGCCACCAAGACCTTTGAGTTCGACTACGCTCAGCTCCTAGGCACATCATTTA
1 AGAAGGGCTATCTGCCA--AAGACCCTTGAGTTCGATTACACTCAGCTCCAAGGCACATCATTTG
* *
124411 CAGAATAGCTTAAGTCG
64 CAGAATAACTTAAGTCT
* * * * *
124428 AGAAGGGCTATCTGCCAAAGACCCTTAAGTTCGATTACACTCAGCTTCAAGGGCATAACATTTAC
1 AGAAGGGCTATCTGCCAAAGACCCTTGAGTTCGATTACACTCAGCTCCAA-GGCACATCATTTGC
* * *
124493 AGCATAACTCAAGGCT
65 AGAATAACTTAAGTCT
* * * * * *
124509 AGAAGGGTTATCTGTTAGCAAAGACCTTTGAGTTCGACTACGCTCAGCTCCTAGGCACATCATTT
1 AGAAGGGCTATCTG---CCAAAGACCCTTGAGTTCGATTACACTCAGCTCCAAGGCACATCATTT
* *
124574 GCAGAATAGCTTAAGTCG
63 GCAGAATAACTTAAGTCT
* * * * *
124592 AGAAGGGCTATCTGCCAAAGACCCTTAAGTTCGATTACACTCAGCTTCAAGGGCATAACATTTAC
1 AGAAGGGCTATCTGCCAAAGACCCTTGAGTTCGATTACACTCAGCTCCAA-GGCACATCATTTGC
* * *
124657 AGCATAACTCAAGGCT
65 AGAATAACTTAAGTCT
* * * * *
124673 AGAAGGGTTATCTGTTAGCAAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTT
1 AGAAGGGCTATCTG---CCAAAGACCCTTGAGTTCGATTACACTCAGCTCCAAGGCACATCATTT
* * *
124738 GTAGAATAGCTTAAGTCA
63 GCAGAATAACTTAAGTCT
** * *
124756 AGAAGGGCTATCTGCCAAAGACCCCCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCA
1 AGAAGGGCTATCTGCCAAAGACCCTTGAGTTCGATTACACTCAGCTCCAAGGCACATCATTTGCA
* *
124821 GAATAGCTTAAGTCA
66 GAATAACTTAAGTCT
** *
124836 AGAAGGGCTATCTGCCAAAGACCCCCGAGTTCGATTACACTCAGCTCCGAGGGCACATCA-TTGA
1 AGAAGGGCTATCTGCCAAAGACCCTTGAGTTCGATTACACTCAGCTCC-AAGGCACATCATTTG-
* * *
124900 CAGCATAACTCAAGGCT
64 CAGAATAACTTAAGTCT
* *** * * *
124917 AGAAGGGTTATCTGTGACCAAAAGACCCCCAAGTTCGATTACACTCAGCTTCGAGGACATATCAT
1 AGAAGGGCTATC--TG-CC-AAAGACCCTTGAGTTCGATTACACTCAGCTCCAAGG-CACATCAT
* *
124982 TTGCAGCACAACTTAAGTCT
61 TTGCAGAATAACTTAAGTCT
* *
125002 AGAAGGGTTGTCTGTCACCAAAAGA-CCTTCGAGTTCGATTACACTCAG
1 AGAAGGGCTATCTG---CC-AAAGACCCTT-GAGTTCGATTACACTCAG
125050 TTCAGAGGCA
Statistics
Matches: 514, Mismatches: 89, Indels: 35
0.81 0.14 0.05
Matches are distributed among these distances:
80 166 0.32
81 104 0.20
82 16 0.03
83 73 0.14
84 65 0.13
85 87 0.17
86 3 0.01
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.24
Consensus pattern (80 bp):
AGAAGGGCTATCTGCCAAAGACCCTTGAGTTCGATTACACTCAGCTCCAAGGCACATCATTTGCA
GAATAACTTAAGTCT
Found at i:125777 original size:35 final size:35
Alignment explanation
Indices: 125682--126105 Score: 179
Period size: 34 Copynumber: 11.8 Consensus size: 35
125672 ATATATACAT
* *
125682 ATTTTGAAACTACGTATATAATATATAGTTTTT-AATAG
1 ATTTTGAAAC-A--TATAT-ATATATAGTTTTTAAAAAC
* * *
125720 TTTTTAAAACTATATA-ATATATAGTTTTAAAAAGAC
1 ATTTTGAAAC-ATATATATATATAGTTTTTAAAA-AC
* *
125756 ATTTTAGAAA-ATATATA-ATATAATTTTTAAAATC
1 ATTTT-GAAACATATATATATATAGTTTTTAAAAAC
*
125790 ATTTTGAAA-ACT-TATATATATAGTTTTTGAAAAC
1 ATTTTGAAACA-TATATATATATAGTTTTTAAAAAC
*
125824 ATTTTTGAAAACATATATAT-TATAG-TTTTGAAAAC
1 A-TTTTG-AAACATATATATATATAGTTTTTAAAAAC
*
125859 ATTTTTTTGAAAACATATATATTATATAG-TTTTAAAATC
1 A---TTTTG-AAACATATATA-TATATAGTTTTTAAAAAC
** * ***
125898 ATTTTGAAATTTATATAATATATAG--TTGAAATTTTT
1 ATTTTGAAACATATAT-ATATATAGTTTTTAAA--AAC
* *
125934 TTTTTGAAA-AT-TATAATATATAG-TTTTGAAAAC
1 ATTTTGAAACATATAT-ATATATAGTTTTTAAAAAC
* *
125967 ATTTTTGAAA-ATAT-T-TATATA--TTATATAAGAC
1 A-TTTTGAAACATATATATATATAGTTTTTA-AAAAC
* *
125999 ATTTTGAAAATATATATAATATATAGTTTTTAAAAAAT
1 ATTTTG-AAACATATAT-ATATATAGTTTTT-AAAAAC
** * *
126037 ATTTTTG-AAGTTATATATTGTATATGTTTTTAAAAATG
1 A-TTTTGAAACATATATA-TATATA-GTTTTTAAAAA-C
*
126075 TTTTTGAAA-ATACGTATAATATATAGTTTTT
1 ATTTTGAAACATA--TAT-ATATATAGTTTTT
126106 TTTTTTAAAA
Statistics
Matches: 308, Mismatches: 41, Indels: 74
0.73 0.10 0.17
Matches are distributed among these distances:
31 8 0.03
32 14 0.05
33 13 0.04
34 63 0.20
35 57 0.19
36 41 0.13
37 51 0.17
38 32 0.10
39 28 0.09
40 1 0.00
ACGTcount: A:0.42, C:0.03, G:0.08, T:0.47
Consensus pattern (35 bp):
ATTTTGAAACATATATATATATAGTTTTTAAAAAC
Found at i:125807 original size:37 final size:37
Alignment explanation
Indices: 125766--125995 Score: 148
Period size: 35 Copynumber: 6.4 Consensus size: 37
125756 ATTTTAGAAA
*
125766 ATATATAATATAATTTTTAAAATCA-TTTTGAAAACTT
1 ATATATAATATAATTTTGAAAA-CATTTTTGAAAACTT
125803 ATATAT-ATAGT--TTTTGAAAACATTTTTGAAAAC--
1 ATATATAATA-TAATTTTGAAAACATTTTTGAAAACTT
* * *
125836 ATATATATTATAGTTTTGAAAACATTTTTTTGAAAACAT
1 ATATATAATATAATTTTGAAAACA--TTTTTGAAAACTT
* *
125875 ATATATTATATAGTTTT-AAAATCA-TTTTG-AAA-TT
1 ATATATAATATAATTTTGAAAA-CATTTTTGAAAACTT
* ***
125909 -TATATAATAT-ATAGTTGAAATTTTTTTTTTGAAAA-TT
1 ATATATAATATAAT-TTTGAAA--ACATTTTTGAAAACTT
* *
125946 ATA-AT-ATATAGTTTTGAAAACATTTTTGAAAATATTT
1 ATATATAATATAATTTTGAAAACATTTTTG-AAA-ACTT
*
125983 ATATATTATATAA
1 ATATATAATATAA
125996 GACATTTTGA
Statistics
Matches: 153, Mismatches: 17, Indels: 44
0.71 0.08 0.21
Matches are distributed among these distances:
32 1 0.01
33 18 0.12
34 14 0.09
35 35 0.23
36 24 0.16
37 31 0.20
38 8 0.05
39 22 0.14
ACGTcount: A:0.43, C:0.03, G:0.07, T:0.47
Consensus pattern (37 bp):
ATATATAATATAATTTTGAAAACATTTTTGAAAACTT
Found at i:125830 original size:12 final size:12
Alignment explanation
Indices: 125813--125837 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
125803 ATATATATAG
125813 TTTTTGAAAACA
1 TTTTTGAAAACA
125825 TTTTTGAAAACA
1 TTTTTGAAAACA
125837 T
1 T
125838 ATATATTATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.08, G:0.08, T:0.44
Consensus pattern (12 bp):
TTTTTGAAAACA
Found at i:126052 original size:39 final size:38
Alignment explanation
Indices: 125696--126105 Score: 190
Period size: 37 Copynumber: 11.5 Consensus size: 38
125686 TGAAACTACG
*
125696 TATATAATATATAGTTTTT---AATAGTTTTT-AAAA-C
1 TATATAATATATAGTTTTTAAAAATA-TTTTTGAAAATA
* * *
125730 TATATAATATATAGTTTTAAAAAGACATTTTAG-AAA-A
1 TATATAATATATAGTTTTTAAAA-ATATTTTTGAAAATA
*
125767 TATATAATATA-A-TTTTT-AAAATCA-TTTTGAAAA-C
1 TATATAATATATAGTTTTTAAAAAT-ATTTTTGAAAATA
* * *
125801 T-TAT-ATATATAGTTTTTGAAAACATTTTTGAAAACA
1 TATATAATATATAGTTTTTAAAAATATTTTTGAAAATA
* * *
125837 TATAT-AT-TATAGTTTTGAAAACATTTTTTTGAAAACA
1 TATATAATATATAGTTTTTAAAA-ATATTTTTGAAAATA
* *
125874 TATATATTATATAG-TTTT-AAAATCA-TTTTG-AAATT
1 TATATAATATATAGTTTTTAAAAAT-ATTTTTGAAAATA
* ** *
125909 TATATAATATATAG--TTGAAATTTTTTTTTTG-AAA-A
1 TATATAATATATAGTTTTTAAA-AATATTTTTGAAAATA
* *
125944 T-TATAATATATAG-TTTTGAAAACATTTTTGAAAATA
1 TATATAATATATAGTTTTTAAAAATATTTTTGAAAATA
* * * * **
125980 T-T-T-ATATAT--TATAT-AAGACATTTTGAAAATATA
1 TATATAATATATAGTTTTTAAAAATATTTTTGAAA-ATA
* **
126013 TATA-ATATATAGT--TTTTAAAAAATATTTTTGAAGTTA
1 TATATA-ATATA-TAGTTTTTAAAAATATTTTTGAAAATA
** *
126050 TATATTGTATAT-GTTTTTAAAAATGTTTTTGAAAATA
1 TATATAATATATAGTTTTTAAAAATATTTTTGAAAATA
**
126087 CGTATAATATATAGTTTTT
1 TATATAATATATAGTTTTT
126106 TTTTTTAAAA
Statistics
Matches: 287, Mismatches: 55, Indels: 64
0.71 0.14 0.16
Matches are distributed among these distances:
32 17 0.06
33 15 0.05
34 59 0.21
35 44 0.15
36 39 0.14
37 86 0.30
38 22 0.08
39 5 0.02
ACGTcount: A:0.42, C:0.03, G:0.08, T:0.47
Consensus pattern (38 bp):
TATATAATATATAGTTTTTAAAAATATTTTTGAAAATA
Found at i:126111 original size:176 final size:175
Alignment explanation
Indices: 125757--126117 Score: 377
Period size: 176 Copynumber: 2.1 Consensus size: 175
125747 TAAAAAGACA
* *
125757 TTTTAGAAAATATATAATATAATTTTTAAAATCATTTTGAAAACTTATATATATAGTTTTTGAAA
1 TTTTAGAAAATATATAATATAATTTTGAAAATCATTTTGAAAAC-TATATATATAGTTTATGAAA
* *
125822 ACATTTTTGAAAACATATATATTATAGTTTTGAAAACATTTTTTTGAAAACATATATATTATATA
65 ACATTTTTGAAAACATATATATTATAGTTTTGAAAAAATATTTTTGAAAACATATATATTATATA
*
125887 GTTTTAAAATCATTTTGAAATTTATATAATATATAGTTGAAATTTTT
130 GTTTTAAAATCATTTTGAAATATATATAATATATAGTT-AAATTTTT
* *
125934 TTTTTGAAAAT-TATAATATATAGTTTTGAAAA-CATTTTTGAAAA-TATTTATATA-TTATAT-
1 TTTTAGAAAATATATAATATA-A-TTTTGAAAATCA-TTTTGAAAACTATATATATAGTT-TATG
* * * **
125994 AAGACA-TTTTGAAAATATATATAATATATAGTTTTTAAAAAATATTTTTG--AAGTTATATATT
62 AAAACATTTTTGAAAACATATAT-AT-TATAGTTTTGAAAAAATATTTTTGAAAACATATATATT
* **
126056 GTATATGTTTTTAAAAATGTTTTTGAAA-ATACGTATAATATATAGTT---TTTTT
125 ATATA-G-TTTT-AAAATCATTTTGAAATATA--TATAATATATAGTTAAATTTTT
*
126108 TTTTAAAAAA
1 TTTTAGAAAA
126118 AAAGCATTTT
Statistics
Matches: 156, Mismatches: 17, Indels: 25
0.79 0.09 0.13
Matches are distributed among these distances:
174 42 0.27
175 10 0.06
176 47 0.30
177 26 0.17
178 31 0.20
ACGTcount: A:0.42, C:0.03, G:0.07, T:0.48
Consensus pattern (175 bp):
TTTTAGAAAATATATAATATAATTTTGAAAATCATTTTGAAAACTATATATATAGTTTATGAAAA
CATTTTTGAAAACATATATATTATAGTTTTGAAAAAATATTTTTGAAAACATATATATTATATAG
TTTTAAAATCATTTTGAAATATATATAATATATAGTTAAATTTTT
Found at i:126177 original size:3 final size:3
Alignment explanation
Indices: 126169--126228 Score: 120
Period size: 3 Copynumber: 20.0 Consensus size: 3
126159 TTTTATATAG
126169 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
126217 ATT ATT ATT ATT
1 ATT ATT ATT ATT
126229 TCCTATTTAT
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 57 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:127290 original size:2 final size:2
Alignment explanation
Indices: 127283--127313 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
127273 GTTTTAGTCC
127283 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
127314 TTTCCGAATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:129258 original size:22 final size:21
Alignment explanation
Indices: 129233--129275 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 21
129223 TAGGTTGATT
129233 TTAAAATATAAACATATAAATA
1 TTAAAATATAAACATA-AAATA
* * *
129255 TTAAGATTTAAACCTAAAATA
1 TTAAAATATAAACATAAAATA
129276 ATACCAAGTC
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.58, C:0.07, G:0.02, T:0.33
Consensus pattern (21 bp):
TTAAAATATAAACATAAAATA
Found at i:129573 original size:52 final size:52
Alignment explanation
Indices: 129516--129614 Score: 128
Period size: 52 Copynumber: 1.9 Consensus size: 52
129506 TTATAGTGAC
* * *
129516 CAAATAGAAATATGACACAATTATTCACTTCAATA-GTGACAAAAATAGTAAT
1 CAAATAAAAATAAGACACAATTACTCACTTCAA-AGGTGACAAAAATAGTAAT
* * *
129568 CAAATAAAAATAAGTCACAATTACTCATTTTAAAGGTGACAAAAATA
1 CAAATAAAAATAAGACACAATTACTCACTTCAAAGGTGACAAAAATA
129615 ATTTTTGACA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
51 1 0.03
52 39 0.98
ACGTcount: A:0.52, C:0.13, G:0.09, T:0.26
Consensus pattern (52 bp):
CAAATAAAAATAAGACACAATTACTCACTTCAAAGGTGACAAAAATAGTAAT
Found at i:132716 original size:23 final size:23
Alignment explanation
Indices: 132685--132748 Score: 83
Period size: 23 Copynumber: 2.8 Consensus size: 23
132675 ATTCAAAGAA
*
132685 AAACTTGTCAAAAAGATAGAGAT
1 AAACGTGTCAAAAAGATAGAGAT
* * *
132708 GAATGTGTCAAAAAGACAGAGAT
1 AAACGTGTCAAAAAGATAGAGAT
*
132731 AAACGTGTCACAAAGATA
1 AAACGTGTCAAAAAGATA
132749 TAATTATTCT
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.50, C:0.11, G:0.20, T:0.19
Consensus pattern (23 bp):
AAACGTGTCAAAAAGATAGAGAT
Found at i:136303 original size:22 final size:22
Alignment explanation
Indices: 136278--136339 Score: 63
Period size: 22 Copynumber: 2.7 Consensus size: 22
136268 TCGAGAGAGC
136278 CATTAATT-TTTATAACTAATTT
1 CATT-ATTATTTATAACTAATTT
*
136300 CATTATTATTTTTAACTAATTATT
1 CATTATTATTTATAACTAA-T-TT
*
136324 CATTATTGAATTATAA
1 CATTATT-ATTTATAA
136340 GAAATTTGGA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
21 3 0.09
22 14 0.42
23 1 0.03
24 9 0.27
25 6 0.18
ACGTcount: A:0.37, C:0.08, G:0.02, T:0.53
Consensus pattern (22 bp):
CATTATTATTTATAACTAATTT
Found at i:136311 original size:24 final size:24
Alignment explanation
Indices: 136285--136330 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
136275 AGCCATTAAT
136285 TTTTATAACTAA-T-TTCATTATTA
1 TTTT-TAACTAATTATTCATTATTA
136308 TTTTTAACTAATTATTCATTATT
1 TTTTTAACTAATTATTCATTATT
136331 GAATTATAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 7 0.33
23 5 0.24
24 9 0.43
ACGTcount: A:0.33, C:0.09, G:0.00, T:0.59
Consensus pattern (24 bp):
TTTTTAACTAATTATTCATTATTA
Found at i:136479 original size:84 final size:85
Alignment explanation
Indices: 136370--136543 Score: 260
Period size: 84 Copynumber: 2.1 Consensus size: 85
136360 TTATATTAAT
* *
136370 TTAATTAGAAATAATTAAAATACTCTTATTTTAAAAGACAACTAATATTATTATTAAATGTTT-A
1 TTAATTAGAAATAACTAAAACACTCTTATTTTAAAAGACAACTAATATTATTATTAAATGTTTAA
*
136434 CTGAATTTGGACTAGCCAAC
66 CTGAATTTGGACTAACCAAC
* * * *
136454 TTAATTAGATATAACTGAAACACTCTTATTTTAAAAGACAGCTAATTTTATTATTAAATGTTTAA
1 TTAATTAGAAATAACTAAAACACTCTTATTTTAAAAGACAACTAATATTATTATTAAATGTTTAA
* *
136519 CTGAATTTGGAGTAACCAAT
66 CTGAATTTGGACTAACCAAC
136539 TTAAT
1 TTAAT
136544 ACCAACTTAA
Statistics
Matches: 80, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
84 57 0.71
85 23 0.29
ACGTcount: A:0.41, C:0.10, G:0.09, T:0.39
Consensus pattern (85 bp):
TTAATTAGAAATAACTAAAACACTCTTATTTTAAAAGACAACTAATATTATTATTAAATGTTTAA
CTGAATTTGGACTAACCAAC
Found at i:143506 original size:34 final size:34
Alignment explanation
Indices: 143463--143588 Score: 138
Period size: 34 Copynumber: 3.8 Consensus size: 34
143453 TTCGTCCTAC
143463 TAGGATTCAAACTCCTAAAAATAGGATAGAATTT
1 TAGGATTCAAACTCCTAAAAATAGGATAGAATTT
* *
143497 TAGGATTCAAACTCCTAAAGATATGATAGAATTTT
1 TAGGATTCAAACTCCTAAAAATAGGATAGAA-TTT
143532 GCTAGGATTC-AA-----AAAAATAGGATAGAATTT
1 --TAGGATTCAAACTCCTAAAAATAGGATAGAATTT
* * *
143562 TATGATTTAAACTCCTAAAGATAGGAT
1 TAGGATTCAAACTCCTAAAAATAGGAT
143589 CCACAAGTAC
Statistics
Matches: 76, Mismatches: 7, Indels: 18
0.75 0.07 0.18
Matches are distributed among these distances:
28 6 0.08
29 2 0.03
30 3 0.04
31 13 0.17
34 39 0.51
35 3 0.04
36 2 0.03
37 8 0.11
ACGTcount: A:0.43, C:0.10, G:0.16, T:0.31
Consensus pattern (34 bp):
TAGGATTCAAACTCCTAAAAATAGGATAGAATTT
Found at i:143559 original size:31 final size:29
Alignment explanation
Indices: 143479--143562 Score: 80
Period size: 31 Copynumber: 2.7 Consensus size: 29
143469 TCAAACTCCT
143479 AAAAATAGGATAGAA-TTTTAGGATTCAA
1 AAAAATAGGATAGAATTTTTAGGATTCAA
*
143507 ACTCCTAAAGATATGATAGAATTTTGCTAGGATTCAA
1 A-----AAA-ATAGGATAGAATTTT--TAGGATTCAA
143544 AAAAATAGGATAGAATTTT
1 AAAAATAGGATAGAATTTT
143563 ATGATTTAAA
Statistics
Matches: 45, Mismatches: 2, Indels: 15
0.73 0.03 0.24
Matches are distributed among these distances:
28 1 0.02
31 14 0.31
32 3 0.07
33 3 0.07
34 10 0.22
35 3 0.07
37 11 0.24
ACGTcount: A:0.45, C:0.07, G:0.17, T:0.31
Consensus pattern (29 bp):
AAAAATAGGATAGAATTTTTAGGATTCAA
Found at i:147394 original size:23 final size:25
Alignment explanation
Indices: 147335--147424 Score: 66
Period size: 24 Copynumber: 3.7 Consensus size: 25
147325 AAGATCCAAT
*
147335 CAAGAACAAAAAAGAAAAGAAGCAAA
1 CAAGAACAAAAGA-AAAAGAAGCAAA
* *
147361 AAAAAAC-AAAGAAAAAG-AG-AAA
1 CAAGAACAAAAGAAAAAGAAGCAAA
147383 CAAGAACAAAAGGAAAAA-AGAGCAAA
1 CAAGAACAAAA-GAAAAAGA-AGCAAA
**
147409 -AATCA-AAAAGAAAAAG
1 CAAGAACAAAAGAAAAAG
147425 GGACAAAAAG
Statistics
Matches: 51, Mismatches: 7, Indels: 14
0.71 0.10 0.19
Matches are distributed among these distances:
22 8 0.16
23 11 0.22
24 15 0.29
25 9 0.18
26 8 0.16
ACGTcount: A:0.74, C:0.09, G:0.16, T:0.01
Consensus pattern (25 bp):
CAAGAACAAAAGAAAAAGAAGCAAA
Found at i:147398 original size:16 final size:17
Alignment explanation
Indices: 147336--147409 Score: 52
Period size: 16 Copynumber: 4.6 Consensus size: 17
147326 AGATCCAATC
*
147336 AAGAACAAAAAAGAAAA
1 AAGAACAAAAGAGAAAA
*
147353 GAAGCAA-AAAA-A-AACA
1 -AAG-AACAAAAGAGAAAA
*
147369 AAG-A-AAAAGAGAAAC
1 AAGAACAAAAGAGAAAA
147384 AAGAACAAAAG-GAAAA
1 AAGAACAAAAGAGAAAA
*
147400 AAGAGCAAAA
1 AAGAACAAAA
147410 ATCAAAAAGA
Statistics
Matches: 46, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
13 5 0.11
14 1 0.02
15 8 0.17
16 17 0.37
17 6 0.13
18 7 0.15
19 2 0.04
ACGTcount: A:0.76, C:0.08, G:0.16, T:0.00
Consensus pattern (17 bp):
AAGAACAAAAGAGAAAA
Found at i:148073 original size:22 final size:22
Alignment explanation
Indices: 148045--148087 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
148035 GCTACCCCAG
*
148045 CAAACCTTTGAGCATCCAATGC
1 CAAACCTTTGAGCATCAAATGC
148067 CAAACCTTTGAGCATCAAATG
1 CAAACCTTTGAGCATCAAATG
148088 AACAAAAATG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.35, C:0.28, G:0.14, T:0.23
Consensus pattern (22 bp):
CAAACCTTTGAGCATCAAATGC
Found at i:148556 original size:18 final size:18
Alignment explanation
Indices: 148521--148556 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
148511 TCAACATCAA
**
148521 ATATTGGGGCATTTTTGG
1 ATATTGGGGCATCGTTGG
148539 ATATTGGGGCATCGTTGG
1 ATATTGGGGCATCGTTGG
148557 GGATTCAGCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.17, C:0.08, G:0.36, T:0.39
Consensus pattern (18 bp):
ATATTGGGGCATCGTTGG
Found at i:148730 original size:29 final size:29
Alignment explanation
Indices: 148697--148755 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
148687 TACAGCTTTT
148697 AGAGTCAAGTTTCGACTTTAAGACGAAGG
1 AGAGTCAAGTTTCGACTTTAAGACGAAGG
148726 AGAGTCAAGTTTCGACTTTAAGACGAAGG
1 AGAGTCAAGTTTCGACTTTAAGACGAAGG
148755 A
1 A
148756 TACTCGATTC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.36, C:0.14, G:0.27, T:0.24
Consensus pattern (29 bp):
AGAGTCAAGTTTCGACTTTAAGACGAAGG
Found at i:148976 original size:36 final size:37
Alignment explanation
Indices: 148929--149063 Score: 100
Period size: 36 Copynumber: 3.8 Consensus size: 37
148919 CAGATGATTA
* *
148929 TCTCACTTGAGATTGTTTTTCTTAAAACAAGA-TTTG
1 TCTCGCTTGAGATAGTTTTTCTTAAAACAAGACTTTG
** ** * * *
148965 TCTCGCTTGAGACCG-TTTTC--ACTAGAAGATTTTA
1 TCTCGCTTGAGATAGTTTTTCTTAAAACAAGACTTTG
* *
148999 TCTCGCTTGAGATAGTTTCTCTTGAAACAA-ACTTTG
1 TCTCGCTTGAGATAGTTTTTCTTAAAACAAGACTTTG
* * * *
149035 TCTCCCTTGAGACAGTTTCTCTTGAAACA
1 TCTCGCTTGAGATAGTTTTTCTTAAAACA
149064 TCTACTTTGA
Statistics
Matches: 77, Mismatches: 18, Indels: 8
0.75 0.17 0.08
Matches are distributed among these distances:
33 6 0.08
34 16 0.21
35 9 0.12
36 43 0.56
37 3 0.04
ACGTcount: A:0.25, C:0.20, G:0.16, T:0.39
Consensus pattern (37 bp):
TCTCGCTTGAGATAGTTTTTCTTAAAACAAGACTTTG
Found at i:149268 original size:65 final size:66
Alignment explanation
Indices: 149188--149318 Score: 212
Period size: 65 Copynumber: 2.0 Consensus size: 66
149178 AGTTTCGCTC
* *
149188 AAGACAACACAAGTTCAACTTCACAACGAAGGGGCCGCTGGTTGTCAACAAA-AA-TTCCCCAGT
1 AAGACAACACAAGTTCAACTTCACAACGAAGGGGCCACTGGCTGTCAACAAACAACTT-CCCAGT
149251 TT
65 TT
*
149253 AAGACAGCACAAGTTCAACTTCACAACGAAGGGGCCACTGGCTGTCAACAAACAACTTCCCAGTT
1 AAGACAACACAAGTTCAACTTCACAACGAAGGGGCCACTGGCTGTCAACAAACAACTTCCCAGTT
149318 T
66 T
149319 CAGAGTCAAT
Statistics
Matches: 61, Mismatches: 3, Indels: 3
0.91 0.04 0.04
Matches are distributed among these distances:
65 49 0.80
66 10 0.16
67 2 0.03
ACGTcount: A:0.35, C:0.27, G:0.18, T:0.19
Consensus pattern (66 bp):
AAGACAACACAAGTTCAACTTCACAACGAAGGGGCCACTGGCTGTCAACAAACAACTTCCCAGTT
T
Found at i:149789 original size:105 final size:106
Alignment explanation
Indices: 149602--149845 Score: 348
Period size: 105 Copynumber: 2.3 Consensus size: 106
149592 GCTCCGAGTT
* * ** *
149602 CAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAATGCAAGTTCAACTTCACGACGAAG
1 CAATTTCAACTTCACGACGAAGGATATTGGACTCCAGAAAACACAAGTTCAACTTCACAACGAAG
*
149667 GGACCGCTGCTTATCAAC-AACAACTTCCCAA-TCTCAGAGC
66 GGACCGCTGCTTATCAACAAACAAATTCCCAATTC-CAGAGC
*
149707 CAATTTCAACTTCACGACGAAGGATATTGGACTCGAGAAAACACAAGTTCAACTTCACAACGAAG
1 CAATTTCAACTTCACGACGAAGGATATTGGACTCCAGAAAACACAAGTTCAACTTCACAACGAAG
* * * **
149772 GGACGGCTGGTTGTCAACAAACAAATTCCCGGTTCCAGAGC
66 GGACCGCTGCTTATCAACAAACAAATTCCCAATTCCAGAGC
*
149813 CAATTTCAACTTCACGACGGAGGATATTGGACT
1 CAATTTCAACTTCACGACGAAGGATATTGGACT
149846 TGGAACAATG
Statistics
Matches: 124, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
105 74 0.60
106 48 0.39
107 2 0.02
ACGTcount: A:0.34, C:0.26, G:0.19, T:0.21
Consensus pattern (106 bp):
CAATTTCAACTTCACGACGAAGGATATTGGACTCCAGAAAACACAAGTTCAACTTCACAACGAAG
GGACCGCTGCTTATCAACAAACAAATTCCCAATTCCAGAGC
Found at i:150437 original size:34 final size:34
Alignment explanation
Indices: 150394--150519 Score: 138
Period size: 34 Copynumber: 3.8 Consensus size: 34
150384 TTCGTCCTAC
150394 TAGGATTCAAACTCCTAAAAATAGGATAGAATTT
1 TAGGATTCAAACTCCTAAAAATAGGATAGAATTT
* *
150428 TAGGATTCAAACTCCTAAAGATATGATAGAATTTT
1 TAGGATTCAAACTCCTAAAAATAGGATAGAA-TTT
150463 GCTAGGATTC-AA-----AAAAATAGGATAGAATTT
1 --TAGGATTCAAACTCCTAAAAATAGGATAGAATTT
* * *
150493 TATGATTTAAACTCCTAAAGATAGGAT
1 TAGGATTCAAACTCCTAAAAATAGGAT
150520 CCACAAGTAC
Statistics
Matches: 76, Mismatches: 7, Indels: 18
0.75 0.07 0.18
Matches are distributed among these distances:
28 6 0.08
29 2 0.03
30 3 0.04
31 13 0.17
34 39 0.51
35 3 0.04
36 2 0.03
37 8 0.11
ACGTcount: A:0.43, C:0.10, G:0.16, T:0.31
Consensus pattern (34 bp):
TAGGATTCAAACTCCTAAAAATAGGATAGAATTT
Found at i:150490 original size:31 final size:29
Alignment explanation
Indices: 150410--150493 Score: 80
Period size: 31 Copynumber: 2.7 Consensus size: 29
150400 TCAAACTCCT
150410 AAAAATAGGATAGAA-TTTTAGGATTCAA
1 AAAAATAGGATAGAATTTTTAGGATTCAA
*
150438 ACTCCTAAAGATATGATAGAATTTTGCTAGGATTCAA
1 A-----AAA-ATAGGATAGAATTTT--TAGGATTCAA
150475 AAAAATAGGATAGAATTTT
1 AAAAATAGGATAGAATTTT
150494 ATGATTTAAA
Statistics
Matches: 45, Mismatches: 2, Indels: 15
0.73 0.03 0.24
Matches are distributed among these distances:
28 1 0.02
31 14 0.31
32 3 0.07
33 3 0.07
34 10 0.22
35 3 0.07
37 11 0.24
ACGTcount: A:0.45, C:0.07, G:0.17, T:0.31
Consensus pattern (29 bp):
AAAAATAGGATAGAATTTTTAGGATTCAA
Found at i:151058 original size:24 final size:23
Alignment explanation
Indices: 150994--151062 Score: 68
Period size: 24 Copynumber: 3.0 Consensus size: 23
150984 ATATTACTTT
*
150994 TGATTTT-CTTTTTTTTATTATTA
1 TGATTTTACTTTTTTATA-TATTA
* * *
151017 TTATTTTACTTATATATATATATA
1 TGATTTTACTTTTTTATATAT-TA
*
151041 TGCTTTTACTTTTTTATATATT
1 TGATTTTACTTTTTTATATATT
151063 TTACTCATTT
Statistics
Matches: 36, Mismatches: 8, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
23 10 0.28
24 26 0.72
ACGTcount: A:0.25, C:0.06, G:0.03, T:0.67
Consensus pattern (23 bp):
TGATTTTACTTTTTTATATATTA
Found at i:152358 original size:13 final size:13
Alignment explanation
Indices: 152340--152366 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
152330 GCATGAGGCC
152340 TTATCAGAGATGA
1 TTATCAGAGATGA
152353 TTATCAGAGATGA
1 TTATCAGAGATGA
152366 T
1 T
152367 AATGGCAACT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.07, G:0.22, T:0.33
Consensus pattern (13 bp):
TTATCAGAGATGA
Found at i:152884 original size:19 final size:20
Alignment explanation
Indices: 152841--152886 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
152831 ATTTTATATC
*
152841 AAATTTTAAGTTATAATTTT
1 AAATTTTAAATTATAATTTT
*
152861 -TATTTTAAATTA-AATTTT
1 AAATTTTAAATTATAATTTT
152879 AAATTTTA
1 AAATTTTA
152887 TAATATTTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
18 6 0.27
19 16 0.73
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (20 bp):
AAATTTTAAATTATAATTTT
Found at i:153554 original size:50 final size:50
Alignment explanation
Indices: 153496--153621 Score: 164
Period size: 50 Copynumber: 2.5 Consensus size: 50
153486 TTAGCATAAA
* * *
153496 AGCGCGCCCCCTGCACCGCGCTATATGCTGATTTGGCGCCACGTGGATAT
1 AGCGCGCCCCCTGCACCGCGCTATACGCTAATCTGGCGCCACGTGGATAT
* * * * *
153546 AGCGCGCCCCTTGCCCCGCGATATACGGTAATCTGGCGCCACGTGGGTAT
1 AGCGCGCCCCCTGCACCGCGCTATACGCTAATCTGGCGCCACGTGGATAT
153596 AGCGCGCCCCCTG-ATCCGCGCTATAC
1 AGCGCGCCCCCTGCA-CCGCGCTATAC
153622 TTGGATATCT
Statistics
Matches: 64, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
50 64 1.00
ACGTcount: A:0.16, C:0.37, G:0.28, T:0.20
Consensus pattern (50 bp):
AGCGCGCCCCCTGCACCGCGCTATACGCTAATCTGGCGCCACGTGGATAT
Found at i:154093 original size:111 final size:111
Alignment explanation
Indices: 153894--154115 Score: 383
Period size: 111 Copynumber: 2.0 Consensus size: 111
153884 TGGAAAGCAT
* *
153894 ATATCTCTACACTTTGTTGATACGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAA
1 ATATCTCGACACTTTGCTGATACGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAA
* *
153959 TATTTAGTTGATTTATTATATGCATGATTATTAGATTAAGAATTAA
66 TAATTAGTTGATTCATTATATGCATGATTATTAGATTAAGAATTAA
154005 ATATCTCGACACTTTGCTGATACGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAA
1 ATATCTCGACACTTTGCTGATACGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAA
*
154070 TAATTAGTTGATTCATT-TAATGCATGATTATTAGATTAAGAGTTAA
66 TAATTAGTTGATTCATTAT-ATGCATGATTATTAGATTAAGAATTAA
154116 TTTTTGTAAT
Statistics
Matches: 105, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
110 1 0.01
111 104 0.99
ACGTcount: A:0.35, C:0.08, G:0.12, T:0.45
Consensus pattern (111 bp):
ATATCTCGACACTTTGCTGATACGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAA
TAATTAGTTGATTCATTATATGCATGATTATTAGATTAAGAATTAA
Found at i:155971 original size:6 final size:6
Alignment explanation
Indices: 155950--156003 Score: 51
Period size: 6 Copynumber: 9.5 Consensus size: 6
155940 ACCTGCTCAG
* * *
155950 GACGAC GACAAT GACGAT GACGAT G--G-T GACGAC GACGAT GACGAT
1 GACGAT GACGAT GACGAT GACGAT GACGAT GACGAT GACGAT GACGAT
*
155995 GATGAT GAC
1 GACGAT GAC
156004 AACGAGGAGT
Statistics
Matches: 38, Mismatches: 7, Indels: 6
0.75 0.14 0.12
Matches are distributed among these distances:
3 2 0.05
4 1 0.03
5 1 0.03
6 34 0.89
ACGTcount: A:0.33, C:0.19, G:0.33, T:0.15
Consensus pattern (6 bp):
GACGAT
Found at i:155990 original size:27 final size:27
Alignment explanation
Indices: 155950--156001 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
155940 ACCTGCTCAG
155950 GACGACGACAATGACGATGACGATGGT
1 GACGACGACAATGACGATGACGATGGT
* *
155977 GACGACGACGATGACGATGATGATG
1 GACGACGACAATGACGATGACGATG
156002 ACAACGAGGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.33, C:0.17, G:0.35, T:0.15
Consensus pattern (27 bp):
GACGACGACAATGACGATGACGATGGT
Found at i:156008 original size:21 final size:21
Alignment explanation
Indices: 155963--156008 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
155953 GACGACAATG
* *
155963 ACGATGACGATGGTGACGACG
1 ACGATGACGATGATGACGACA
*
155984 ACGATGACGATGATGATGACA
1 ACGATGACGATGATGACGACA
156005 ACGA
1 ACGA
156009 GGAGTCAGAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.35, C:0.17, G:0.33, T:0.15
Consensus pattern (21 bp):
ACGATGACGATGATGACGACA
Found at i:156008 original size:27 final size:27
Alignment explanation
Indices: 155951--156008 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
155941 CCTGCTCAGG
***
155951 ACGACGACAATGACGATGACGATGGTG
1 ACGACGACAATGACGATGACGATGACA
* *
155978 ACGACGACGATGACGATGATGATGACA
1 ACGACGACAATGACGATGACGATGACA
156005 ACGA
1 ACGA
156009 GGAGTCAGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.36, C:0.19, G:0.31, T:0.14
Consensus pattern (27 bp):
ACGACGACAATGACGATGACGATGACA
Found at i:160010 original size:50 final size:49
Alignment explanation
Indices: 159901--160022 Score: 145
Period size: 50 Copynumber: 2.4 Consensus size: 49
159891 CTACGTGACG
* * * *
159901 TATAGCGCGGATCAGGGGACGCGCTATACCCACGTGGCGCCAGATCACCG
1 TATAGCGCGGAGCAGGGG-CGCGCTATACCCACGTGGCACCAAATCACCA
* * * *
159951 TATATCGCGGGGCAGGAGGCGCGCTATACCCACGTGGCATCAAATCAGCA
1 TATAGCGCGGAGCAGG-GGCGCGCTATACCCACGTGGCACCAAATCACCA
*
160001 TATAGCGCGGTGCAGGGGCGCG
1 TATAGCGCGGAGCAGGGGCGCG
160023 TTTTTCTGCT
Statistics
Matches: 61, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
49 6 0.10
50 53 0.87
51 2 0.03
ACGTcount: A:0.22, C:0.29, G:0.34, T:0.15
Consensus pattern (49 bp):
TATAGCGCGGAGCAGGGGCGCGCTATACCCACGTGGCACCAAATCACCA
Found at i:160592 original size:267 final size:264
Alignment explanation
Indices: 160117--160599 Score: 743
Period size: 267 Copynumber: 1.8 Consensus size: 264
160107 GGAAAATAGC
160117 CTTTATTTCACAAGAGTGATTAGAAGAATAAAGATAAAATCTTTAATTTATAATTTTTTAAAATA
1 CTTTATTTCACAAGAGTGATTAGAAGAATAAAGATAAAATCTTTAATTTATAATTTTTTAAAATA
*
160182 AAAAATCACTAATTTTATTAAAAATAGAATTTATATAACTATTGATACAAAAACTAGCAACCTAT
66 AAAAATCACTAATTTTATTAAAAATAGAATTTATATAACTATTGATACAAAAACTAGCAACATAT
* * * * *
160247 ATCATAAAAAGACTAAAGAAGAAAATTGTTAAAAATCTAGCCAAAATGTTCGAACAAAATAAAGA
131 ATCACAAAAAGACTAAAGAAGAAAAATATTAAAAACCTAGCCAAAATGCTCGAACAAAATAAAGA
160312 TACGAACAAATCTGACTGCATCGATAAACGAATTACTAAAAGATAATAACATATTTGATAATATT
196 TACGAACAAATCTGACTGCATCGATAAACGAATTACTAAAAGATAATAACATATTTGATAATATT
160377 TTGA
261 TTGA
* * ***
160381 CTTTATTTCTCAAGAGTGATTAGAATAATAAAGATAAAATCTTTAATTTATATATATATTTTTTT
1 CTTTATTTCACAAGAGTGATTAGAAGAATAAAGATAAAATCTTTAATTTATA-AT-T-TTTTAAA
* *
160446 ATAAAAAAATCACTAATTTTATTAAAAATATAATTTATATAACTATTGATA-AAAAATTAGCAAC
63 AT-AAAAAATCACTAATTTTATTAAAAATAGAATTTATATAACTATTGATACAAAAACTAGCAAC
** * ** *
160510 ATATATCACACCAGGACTAAAGAAGAAAAATATTAAAAACCTAGTTAAAATGCTCGAATAAAATA
127 ATATATCACAAAAAGACTAAAGAAGAAAAATATTAAAAACCTAGCCAAAATGCTCGAACAAAATA
*
160575 AAGATACGAATAAATCTGACTGCAT
192 AAGATACGAACAAATCTGACTGCAT
160600 TGTCAAACAA
Statistics
Matches: 195, Mismatches: 20, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
264 50 0.26
265 2 0.01
266 1 0.01
267 95 0.49
268 47 0.24
ACGTcount: A:0.49, C:0.10, G:0.09, T:0.32
Consensus pattern (264 bp):
CTTTATTTCACAAGAGTGATTAGAAGAATAAAGATAAAATCTTTAATTTATAATTTTTTAAAATA
AAAAATCACTAATTTTATTAAAAATAGAATTTATATAACTATTGATACAAAAACTAGCAACATAT
ATCACAAAAAGACTAAAGAAGAAAAATATTAAAAACCTAGCCAAAATGCTCGAACAAAATAAAGA
TACGAACAAATCTGACTGCATCGATAAACGAATTACTAAAAGATAATAACATATTTGATAATATT
TTGA
Found at i:161128 original size:23 final size:23
Alignment explanation
Indices: 161081--161128 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
161071 AAAATTTCAG
* * **
161081 GAGCTCGATTGAAGCTCGATTTT
1 GAGCTCAATTCAAGCTCGAACTT
161104 GAGCTCAATTCAAGCTCGAACTT
1 GAGCTCAATTCAAGCTCGAACTT
161127 GA
1 GA
161129 TTTAAGCTCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (23 bp):
GAGCTCAATTCAAGCTCGAACTT
Found at i:164337 original size:39 final size:40
Alignment explanation
Indices: 164283--164392 Score: 150
Period size: 39 Copynumber: 2.8 Consensus size: 40
164273 AAATCATTAC
164283 ATCATCTGACACGTTTGGTTCTAGAAAATATGACCCATAT
1 ATCATCTGACACGTTTGGTTCTAGAAAATATGACCCATAT
* * *
164323 ATCATATGAC-CGTTTGGTTCTAGAAAATATGACTCGTAT
1 ATCATCTGACACGTTTGGTTCTAGAAAATATGACCCATAT
* * * *
164362 ATCATCTTACTCATTTGGTTCTAAAAAATAT
1 ATCATCTGACACGTTTGGTTCTAGAAAATAT
164393 TTTATGTTTT
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
39 35 0.56
40 27 0.44
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.36
Consensus pattern (40 bp):
ATCATCTGACACGTTTGGTTCTAGAAAATATGACCCATAT
Found at i:164583 original size:12 final size:12
Alignment explanation
Indices: 164566--164590 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
164556 ATTAAAATAT
164566 AATTATTACATA
1 AATTATTACATA
164578 AATTATTACATA
1 AATTATTACATA
164590 A
1 A
164591 TTTTATTATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.08, G:0.00, T:0.40
Consensus pattern (12 bp):
AATTATTACATA
Found at i:165144 original size:24 final size:26
Alignment explanation
Indices: 165102--165163 Score: 69
Period size: 24 Copynumber: 2.5 Consensus size: 26
165092 TATTTTATAA
* *
165102 AAATT-TTAAAAATTATAAAGATATT
1 AAATTATTAAAAATTATAAAAAAATT
165127 AAA-TA-TAAAAA-TACTAAAAAAATT
1 AAATTATTAAAAATTA-TAAAAAAATT
165151 AAATTATTAAAAA
1 AAATTATTAAAAA
165164 AACTTTGTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
23 2 0.06
24 18 0.58
25 5 0.16
26 6 0.19
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.32
Consensus pattern (26 bp):
AAATTATTAAAAATTATAAAAAAATT
Found at i:167628 original size:3 final size:3
Alignment explanation
Indices: 167620--167659 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
167610 CATGTATCAA
167620 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
167660 GTCGCGGTCG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:168470 original size:34 final size:34
Alignment explanation
Indices: 168432--168507 Score: 102
Period size: 33 Copynumber: 2.3 Consensus size: 34
168422 AGTCCTACTT
*
168432 GGACTCAAAATGC-TTCGGTTTTAGTGTTTCAATA
1 GGACTCAAAATACATT-GGTTTTAGTGTTTCAATA
*
168466 GGACTC-AAATACATTGGTTTTAGTGTTTTAATA
1 GGACTCAAAATACATTGGTTTTAGTGTTTCAATA
*
168499 AGACTCAAA
1 GGACTCAAA
168508 TACGTTAGTT
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
33 27 0.73
34 10 0.27
ACGTcount: A:0.32, C:0.13, G:0.18, T:0.37
Consensus pattern (34 bp):
GGACTCAAAATACATTGGTTTTAGTGTTTCAATA
Found at i:168489 original size:33 final size:33
Alignment explanation
Indices: 168448--168510 Score: 108
Period size: 33 Copynumber: 1.9 Consensus size: 33
168438 AAAATGCTTC
*
168448 GGTTTTAGTGTTTCAATAGGACTCAAATACATT
1 GGTTTTAGTGTTTCAATAAGACTCAAATACATT
*
168481 GGTTTTAGTGTTTTAATAAGACTCAAATAC
1 GGTTTTAGTGTTTCAATAAGACTCAAATAC
168511 GTTAGTTTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.32, C:0.11, G:0.17, T:0.40
Consensus pattern (33 bp):
GGTTTTAGTGTTTCAATAAGACTCAAATACATT
Found at i:168612 original size:12 final size:13
Alignment explanation
Indices: 168590--168627 Score: 53
Period size: 12 Copynumber: 3.0 Consensus size: 13
168580 AATATATTTT
168590 TATAATAATAATAA
1 TATAAT-ATAATAA
168604 TA-AATATAAT-A
1 TATAATATAATAA
168615 TATAATATAATAA
1 TATAATATAATAA
168628 AATGTTTTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
11 3 0.14
12 13 0.59
13 4 0.18
14 2 0.09
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (13 bp):
TATAATATAATAA
Found at i:169132 original size:84 final size:83
Alignment explanation
Indices: 168972--169735 Score: 706
Period size: 84 Copynumber: 9.2 Consensus size: 83
168962 CTGAATGGAA
** * * * *
168972 TCGAACTCGAAGGTCTTTG--G-CAGATAGTCCTTCTTGCCTTGAGCTATGCTGCAAATGATGGT
1 TCGAACTCGAAGGTCTTTGTTGACAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGAT-GT
* *
169034 GCCTTTGAGCTGAGTGGAG
65 GCCTTGGAGCTGAGTGTAG
* * * * * *
169053 TCGAACTCGGAGGTCTTTGTTGACAGATAACCCTTATAGCCTTGAGTTATGTTGTAAATGATGTG
1 TCGAACTCGAAGGTCTTTGTTGACAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATGTG
*** * *
169118 CCCTCAAAGTTGAGTGTAA
66 -CCTTGGAGCTGAGTGTAG
* * * *
169137 TCGAACTCGAGGGTCTTTG--G-CAGATAGCCCTTCTCA-ACTTAAGCTATACTGCAAATGATGT
1 TCGAACTCGAAGGTCTTTGTTGACAGATAACCCTTCT-AGACTTAAGTTATGCTGCAAATGATGT
* *
169198 TCCTTGGAGCTGAGCGTAG
65 GCCTTGGAGCTGAGTGTAG
* * * * * *
169217 TCGAACTCGAAAGTCTTTGGTTGGCAGATAACCCTTATCGACTTAAGTTATGCTGTAAATGATAT
1 TCGAACTCGAAGGTCTTT-GTTGACAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATGT
* *
169282 GTCTTGGAGCTGAGCGTAG
65 GCCTTGGAGCTGAGTGTAG
* * * * * * * **
169301 TCGAACTCAAAGGTCTTTTGGTCACTGATAACCCTTCTAGCCTTGAGTTATACTATAAATGATGT
1 TCGAACTCGAAGGTC-TTTGTTGACAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATGT
* *
169366 GCCTTCGAAGCTGAGTGTAA
65 GCCTT-GGAGCTGAGTGTAG
* * * * *
169386 TCGAACTCGAGGGT-TTT-TGGA-AGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTG
1 TCGAACTCGAAGGTCTTTGTTGACAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATGTG
169448 CCTTGGAGCTGAGTGTAG
66 CCTTGGAGCTGAGTGTAG
* * * *
169466 TCAAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATAT
1 TCGAACTCGAAGGTCTTT-GTTGACAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATGT
*
169531 GCCTTGGAGCTGAGCGTAG
65 GCCTTGGAGCTGAGTGTAG
** * * * * * **
169550 TCGAACTTAAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAGTTATGTTATAAATGATGT
1 TCGAACTCGAAGGTC-TTTGTTGACAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATGT
* * * *
169615 GCCCTCGAAGCTGAGTATAA
65 G-CCTTGGAGCTGAGTGTAG
* * *
169635 TCGAACTCG-AGAGTCTTCGGTTGACAGATAACCCTTCTTGACTTAAGTTATACTGCAAATGATG
1 TCGAACTCGAAG-GTCTT-TGTTGACAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATG
*
169699 TGCCTTGGAGCTGAGCGTAG
64 TGCCTTGGAGCTGAGTGTAG
169719 TCGAACTCGAAGG-CTTT
1 TCGAACTCGAAGGTCTTT
169736 TGGTGGGCAC
Statistics
Matches: 543, Mismatches: 119, Indels: 41
0.77 0.17 0.06
Matches are distributed among these distances:
80 52 0.10
81 89 0.16
82 3 0.01
83 13 0.02
84 294 0.54
85 92 0.17
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (83 bp):
TCGAACTCGAAGGTCTTTGTTGACAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATGTG
CCTTGGAGCTGAGTGTAG
Found at i:169247 original size:165 final size:164
Alignment explanation
Indices: 168955--169729 Score: 747
Period size: 165 Copynumber: 4.7 Consensus size: 164
168945 GTTGATACGC
* * ** * * * *
168955 CCTCG-AGCTGAATGGAATCGAACTCGAAGGTC-TTTGGCAGATAGTCCTTCTTGCCTTGAGCTA
1 CCTCGAAGCTGAGTGTAATCGAACTCGAAGGTCTTTTGGCAGATAACCCTTCTCGACTTAAGTTA
* * * * * *
169018 TGCTGCAAATGATGGTGCCTTTGAGCTGAGTGGAGTCGAACTCGGAGGTCTTTGTTGACAGATAA
66 TACTGCAAATGAT-GTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAAGTCTTTGTTGACAGATAA
* * *
169083 CCCTTATAGCCTTGAGTTATGTTGTAAATGATGTG
130 CCCTTATAGACTTAAGTTATGCTGTAAATGATGTG
* * * * * *
169118 CCCTCAAAGTTGAGTGTAATCGAACTCGAGGGTC-TTTGGCAGATAGCCCTTCTCAACTTAAGCT
1 -CCTCGAAGCTGAGTGTAATCGAACTCGAAGGTCTTTTGGCAGATAACCCTTCTCGACTTAAGTT
* *
169182 ATACTGCAAATGATGTTCCTTGGAGCTGAGCGTAGTCGAACTCGAAAGTCTTTGGTTGGCAGATA
65 ATACTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAAGTCTTT-GTTGACAGATA
* *
169247 ACCCTTATCGACTTAAGTTATGCTGTAAATGATATG
129 ACCCTTATAGACTTAAGTTATGCTGTAAATGATGTG
* * * * * * * * *
169283 TCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTTGGTCACTGATAACCCTTCTAGCCTTGAG
1 CCTCGAAGCTGAGTGTAATCGAACTCGAAGGTCTTTTGG-CA--GATAACCCTTCTCGACTTAAG
** * * * ** *
169348 TTATACTATAAATGATGTGCCTTCGAAGCTGAGTGTAATCGAACTCGAGGGT-TTT-TGGA-AGA
63 TTATACTGCAAATGATGTGCCTT-GGAGCTGAGCGTAGTCGAACTCGAAAGTCTTTGTTGACAGA
* * * * *
169410 TAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTG
127 TAACCCTTATAGACTTAAGTTATGCTGTAAATGATGTG
* * * *
169448 CCTTGGAGCTGAGTGTAGTCAAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAG
1 CCTCGAAGCTGAGTGTAATCGAACTCGAAGGTC-TT--TTGGCAGATAACCCTTCTCGACTTAAG
* * * * *
169513 TTATGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACT-TAAAGGTCTTTTGGTCACAG
63 TTATACTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAA-GTC-TTTGTTGACAG
* * * * *
169577 ATAACCCTTCTAGCCTTGAGTTATGTTATAAATGATGTG
126 ATAACCCTTATAGACTTAAGTTATGCTGTAAATGATGTG
* * *
169616 CCCTCGAAGCTGAGTATAATCGAACTCG-AGAGTCTTCGGTTGACAGATAACCCTTCTTGACTTA
1 -CCTCGAAGCTGAGTGTAATCGAACTCGAAG-GTCTT---TTGGCAGATAACCCTTCTCGACTTA
169680 AGTTATACTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAA
61 AGTTATACTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAA
169730 GGCTTTTGGT
Statistics
Matches: 501, Mismatches: 91, Indels: 32
0.80 0.15 0.05
Matches are distributed among these distances:
163 1 0.00
164 81 0.16
165 209 0.42
166 9 0.02
167 3 0.01
168 79 0.16
169 117 0.23
170 2 0.00
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (164 bp):
CCTCGAAGCTGAGTGTAATCGAACTCGAAGGTCTTTTGGCAGATAACCCTTCTCGACTTAAGTTA
TACTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAAGTCTTTGTTGACAGATAAC
CCTTATAGACTTAAGTTATGCTGTAAATGATGTG
Found at i:169393 original size:249 final size:249
Alignment explanation
Indices: 169016--169729 Score: 1070
Period size: 249 Copynumber: 2.9 Consensus size: 249
169006 TGCCTTGAGC
* * * * ** * *
169016 TATGCTGCAAATGATGGTGCCTTTGAGCTGAGTGGAGTCGAACTCGGAGGTC-TTTGTTGACAGA
1 TATGCTGCAAATGAT-ATGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTTGGTCACAGA
* * * *
169080 TAACCCTTATAGCCTTGAGTTATGTTGTAAATGATGTGCCCTCAAAGTTGAGTGTAATCGAACTC
65 TAACCCTTCTAGCCTTGAGTTATGTTATAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTC
* *
169145 GAGGGTCTTTGGCAGATAGCCCTTCTCAACTTAAGCTATACTGCAAATGATGTTCCTTGGAGCTG
130 GAGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATACTGCAAATGATGTGCCTTGGAGCTG
169210 AGCGTAGTCGAACTCGAAAGTCTTTGGTTGGCAGATAACCCTTATCGACTTAAGT
195 AGCGTAGTCGAACTCGAAAGTCTTTGGTTGGCAGATAACCCTTATCGACTTAAGT
* * *
169265 TATGCTGTAAATGATATGTCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTTGGTCACTGAT
1 TATGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTTGGTCACAGAT
** *
169330 AACCCTTCTAGCCTTGAGTTATACTATAAATGATGTGCCTTCGAAGCTGAGTGTAATCGAACTCG
66 AACCCTTCTAGCCTTGAGTTATGTTATAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCG
* * *
169395 AGGGTTTTTGGAAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGA
131 AGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATACTGCAAATGATGTGCCTTGGAGCTGA
* * * *
169460 GTGTAGTCAAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGT
196 GCGTAGTCGAACTCGAAAGTCTTTGGTTGGCAGATAACCCTTATCGACTTAAGT
*
169514 TATGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTTAAAGGTCTTTTGGTCACAGAT
1 TATGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTTGGTCACAGAT
*
169579 AACCCTTCTAGCCTTGAGTTATGTTATAAATGATGTGCCCTCGAAGCTGAGTATAATCGAACTCG
66 AACCCTTCTAGCCTTGAGTTATGTTATAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCG
* * * * *
169644 AGAGTCTTCGGTTGACAGATAACCCTTCTTGACTTAAGTTATACTGCAAATGATGTGCCTTGGAG
131 AGGGTC-T---TTGGCAGATAGCCCTTCTCGACTTAAGCTATACTGCAAATGATGTGCCTTGGAG
169709 CTGAGCGTAGTCGAACTCGAA
192 CTGAGCGTAGTCGAACTCGAA
169730 GGCTTTTGGT
Statistics
Matches: 415, Mismatches: 45, Indels: 6
0.89 0.10 0.01
Matches are distributed among these distances:
248 29 0.07
249 318 0.77
250 1 0.00
253 67 0.16
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (249 bp):
TATGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTTGGTCACAGAT
AACCCTTCTAGCCTTGAGTTATGTTATAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCG
AGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATACTGCAAATGATGTGCCTTGGAGCTGA
GCGTAGTCGAACTCGAAAGTCTTTGGTTGGCAGATAACCCTTATCGACTTAAGT
Found at i:169946 original size:63 final size:65
Alignment explanation
Indices: 169869--170016 Score: 176
Period size: 67 Copynumber: 2.3 Consensus size: 65
169859 AGGCCAATAT
169869 CCTTCG-TCGTGAAGTTGAAATTGACTCT-A-AAACTGAAAAGTTATTTGTTGACAACTAGCCAC
1 CCTTCGCT-GTGAAGTTGAAATTGACTCTAAGAAACTGAAAAGTTATTTGTTGACAACTAGCCAC
169931 C
65 C
* * ** ***
169932 CCTTCGCTGTGAAGTTAAAATTGACTCTGAATGAAACTGAAAAGTTGTTTGTTGACAGTTAGTTG
1 CCTTCGCTGTGAAGTTGAAATTGACTCT-AA-GAAACTGAAAAGTTATTTGTTGACAACTAGCCA
169997 CC
64 CC
*
169999 CATTCGCTGTGAAGTTGA
1 CCTTCGCTGTGAAGTTGA
170017 GCTTGTGTTG
Statistics
Matches: 71, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
63 25 0.35
64 1 0.01
65 1 0.01
67 44 0.62
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32
Consensus pattern (65 bp):
CCTTCGCTGTGAAGTTGAAATTGACTCTAAGAAACTGAAAAGTTATTTGTTGACAACTAGCCACC
Found at i:170229 original size:176 final size:177
Alignment explanation
Indices: 169849--170302 Score: 636
Period size: 176 Copynumber: 2.6 Consensus size: 177
169839 CAAATATTTA
* *
169849 TGTTGTTTCGAGGCCAATATCCTTCG-TCGTGAAGTTGAAATTGACTCT--A--AAACTGAAAAG
1 TGTTGTCTCGAGTCCAATATCCTTCGCT-GTGAAGTTGAAATTGACTCTGAATGAAACTGAAAAG
* * * * * *
169909 TTATTTGTTGACA-ACTAGCCACCCCTTCGCTGTGAAGTTAAAATTGACTCTGAATGAAACTGAA
65 ATATTTGTTGACAGTC-AGTCGCCCCTTCGCTGTGAAGTTGAAATTGAATCTGAATGAAACTGAA
* * **
169973 AAGTTGTTTGTTGACAGTTAGTTGCCCATTCGCTGTGAAGTTGAGCTTG
129 AAGTTATTTGTTGACAGTCAGCCGCCCATTCGCTGTGAAGTTGAGCTTG
* * *
170022 TGTTGTCTCGAGTCCAATATCGTTTGCTGTGAAATTGAAATTGACTCTGAATGAAACTGAAAAGA
1 TGTTGTCTCGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAATGAAACTGAAAAGA
* *
170087 TGTTTGTTGACAGTCAGTCGCCCCTTCGCTGTGAAATTGAAATTGAATCTGAATGAAACTG-AAA
66 TATTTGTTGACAGTCAGTCGCCCCTTCGCTGTGAAGTTGAAATTGAATCTGAATGAAACTGAAAA
*
170151 GTTATTTGTTGACAGTCAGCCGCCCCTTCGCTGTGAAGTTGAGCTTG
131 GTTATTTGTTGACAGTCAGCCGCCCATTCGCTGTGAAGTTGAGCTTG
*
170198 TGTTGTCTCGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAATGAAACT-AAAAAA
1 TGTTGTCTCGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAATGAAACTGAAAAGA
* *
170262 TTTTTTGTTGATAGTCAGTCGCCCCTTCGCTGTGAAGTTGA
66 -TATTTGTTGACAGTCAGTCGCCCCTTCGCTGTGAAGTTGA
170303 GCTTGTGTTG
Statistics
Matches: 249, Mismatches: 25, Indels: 11
0.87 0.09 0.04
Matches are distributed among these distances:
173 41 0.16
174 1 0.00
175 6 0.02
176 137 0.55
177 63 0.25
178 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33
Consensus pattern (177 bp):
TGTTGTCTCGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAATGAAACTGAAAAGA
TATTTGTTGACAGTCAGTCGCCCCTTCGCTGTGAAGTTGAAATTGAATCTGAATGAAACTGAAAA
GTTATTTGTTGACAGTCAGCCGCCCATTCGCTGTGAAGTTGAGCTTG
Found at i:170302 original size:110 final size:110
Alignment explanation
Indices: 170109--170415 Score: 492
Period size: 110 Copynumber: 2.8 Consensus size: 110
170099 GTCAGTCGCC
* * * * *
170109 CCTTCGCTGTGAAATTGAAATTGAATCTGAATGAAACT-GAAAGTTATTTGTTGACAGTCAGCCG
1 CCTTCGCTGTGAAGTTGAAATTGACTCTGAATGAAACTAAAAAGTTATTTGTTGATAGTCAGTCG
170173 CCCCTTCGCTGTGAAGTTGAGCTTGTGTTGTCTCGAGTCCAATAT
66 CCCCTTCGCTGTGAAGTTGAGCTTGTGTTGTCTCGAGTCCAATAT
* *
170218 CCTTCGCTGTGAAGTTGAAATTGACTCTGAATGAAACTAAAAAATTTTTTGTTGATAGTCAGTCG
1 CCTTCGCTGTGAAGTTGAAATTGACTCTGAATGAAACTAAAAAGTTATTTGTTGATAGTCAGTCG
170283 CCCCTTCGCTGTGAAGTTGAGCTTGTGTTGTCTCGAGTCCAATAT
66 CCCCTTCGCTGTGAAGTTGAGCTTGTGTTGTCTCGAGTCCAATAT
* *
170328 CATTCGCTATGAAGTTGAAATTGACTCTGAATGAAACTGAAAAAGTTATTTGTTGACT-GTCAGT
1 CCTTCGCTGTGAAGTTGAAATTGACTCTGAATGAAACT-AAAAAGTTATTTGTTGA-TAGTCAGT
*
170392 CACCCCTTCGCTGTGAAGTTGAGC
64 CGCCCCTTCGCTGTGAAGTTGAGC
170416 AACCACCATC
Statistics
Matches: 183, Mismatches: 12, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
109 36 0.20
110 102 0.56
111 44 0.24
112 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.34
Consensus pattern (110 bp):
CCTTCGCTGTGAAGTTGAAATTGACTCTGAATGAAACTAAAAAGTTATTTGTTGATAGTCAGTCG
CCCCTTCGCTGTGAAGTTGAGCTTGTGTTGTCTCGAGTCCAATAT
Done.