Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005935.1 Hibiscus syriacus cultivar Beakdansim tig00013934_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62533

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8185--8243
15
3.9
15
75
16
59
52
0
0
47
1.00
10099--10146
20
2.3
23
79
17
59
56
2
0
41
1.11
11768--11804
2
18.5
2
94
0
65
48
0
0
51
1.00
15453--15485
2
16.5
2
100
0
66
0
51
0
48
1.00
19492--19598
41
2.6
40
76
7
108
40
14
12
32
1.84
19445--19598
40
3.8
38
75
7
119
38
15
12
33
1.86
21281--21330
24
2.1
24
85
7
66
46
6
10
38
1.62
21465--21491
2
13.5
2
100
0
54
48
0
0
51
1.00
22973--23017
21
2.1
21
83
0
54
40
6
8
44
1.62
23614--23647
17
2.0
17
100
0
68
29
5
0
64
1.17
23628--23667
21
1.9
21
84
0
53
27
7
2
62
1.35
24707--24733
13
2.1
13
100
0
54
29
0
14
55
1.40
27084--27122
19
2.1
19
85
9
53
58
0
0
41
0.98
30323--30446
60
2.0
63
85
4
173
44
14
4
36
1.67
32142--32180
14
2.8
14
84
0
51
35
28
12
23
1.91
34478--34551
21
3.6
21
70
3
69
22
17
25
33
1.96
34477--34574
41
2.4
41
89
0
151
21
18
24
35
1.95
35259--35312
22
2.5
22
84
0
81
37
25
16
20
1.93
35297--35392
41
2.4
40
80
14
108
40
21
15
21
1.91
36744--36791
16
3.0
16
93
0
78
50
2
2
45
1.25
37546--37614
23
3.1
23
73
6
63
14
18
14
52
1.75
42420--42577
81
2.0
81
90
0
253
22
23
17
36
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52229--52540
155
2.0
154
93
0
534
39
26
9
24
1.87
53387--53533
64
2.3
65
85
7
192
33
21
17
28
1.95
54022--54057
17
2.0
19
89
10
58
44
5
11
38
1.63
54191--54298
31
3.5
31
79
3
103
24
18
22
35
1.96
54213--54319
31
3.5
30
79
6
90
24
18
24
32
1.97
54504--54611
31
3.5
31
79
3
103
24
18
22
35
1.96
54526--54632
31
3.5
30
79
6
90
24
18
24
32
1.97
54185--54812
313
2.0
313
100
0
1256
28
17
23
29
1.97
57877--58024
64
2.3
64
82
8
176
33
20
17
27
1.96
58682--58771
30
3.0
29
75
16
76
27
16
22
33
1.95
58732--58802
30
2.4
30
82
0
79
19
16
26
36
1.94

Tables:   1

The End!