Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005936.1 Hibiscus syriacus cultivar Beakdansim tig00013938_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100010

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7165--7244
30
2.7
30
92
1
126
33
25
21
20
1.97
12888--13100
64
3.3
64
80
6
209
27
17
19
35
1.94
16112--16161
25
2.0
26
92
4
84
36
26
22
16
1.94
17925--17953
15
1.9
15
100
0
58
13
13
13
58
1.63
17926--17959
15
2.3
15
89
0
50
14
17
14
52
1.74
28089--28153
32
2.0
32
93
0
112
43
12
23
21
1.86
29120--29159
20
2.0
20
95
0
71
32
10
20
37
1.85
29930--29968
21
1.9
20
89
5
60
20
0
10
69
1.17
30892--30930
12
3.2
12
81
0
51
28
0
0
71
0.86
39920--39945
5
5.2
5
100
0
52
0
19
57
23
1.40
48958--49004
12
3.9
12
77
8
51
68
10
2
19
1.30
54160--54206
13
3.5
13
77
13
51
55
2
2
40
1.24
55640--55731
3
30.7
3
95
0
166
64
0
2
33
1.06
56048--56691
116
5.6
113
87
3
887
29
20
12
38
1.89
56048--56691
230
2.8
229
92
2
1035
29
20
12
38
1.89
57420--58035
92
7.0
91
95
1
929
36
20
13
29
1.91
59176--59206
10
3.1
10
95
0
53
0
12
0
87
0.55
67636--67779
71
2.0
71
100
0
288
22
19
11
47
1.80
69913--69963
18
2.9
17
75
16
50
72
1
0
25
0.95
70618--70664
13
3.5
13
77
13
51
55
2
2
40
1.24
72098--72165
3
22.7
3
96
0
127
64
0
1
33
1.02
78430--78470
2
20.5
2
100
0
82
51
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
79225--79283
29
2.0
30
96
3
111
23
23
6
45
1.76
88320--88361
21
2.0
20
82
13
50
21
0
38
40
1.53
89019--89068
13
3.9
13
72
12
50
44
2
0
54
1.11
89023--89073
26
2.0
26
100
0
102
50
1
0
47
1.12
89294--89326
15
2.3
15
89
5
50
15
6
0
78
0.93
90195--90261
29
2.3
29
82
7
82
47
2
5
43
1.43
90504--90564
20
2.9
21
85
9
79
32
14
34
18
1.91
90502--90581
22
3.7
22
83
6
92
28
16
36
18
1.93
91925--91956
12
2.7
12
90
0
55
56
9
0
34
1.32
93632--93674
14
3.1
14
93
0
68
11
13
16
58
1.64
93619--93685
24
2.8
24
90
4
100
13
13
16
56
1.67
93638--93680
14
3.1
14
93
0
68
16
9
11
62
1.53
95555--95646
9
9.7
9
76
11
76
17
25
28
29
1.97
95556--95646
10
9.6
9
76
15
76
16
25
28
29
1.97
95555--95630
29
2.6
30
89
8
120
17
26
26
30
1.97
95649--95705
5
10.8
5
75
17
53
19
50
22
7
1.71
95649--95713
21
3.0
21
97
2
121
18
47
24
9
1.77
95666--95720
26
2.0
27
89
6
85
18
45
25
10
1.82
95702--95739
7
5.4
7
96
0
67
18
28
26
26
1.98

Tables:   1

The End!