genome.fa.s5937.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005937.1 Hibiscus syriacus cultivar Beakdansim tig00013943_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100713

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
731--1043	103	3.1	102	92	6	511	25	14	24	35	1.93
4062--4118	12	4.6	12	73	6	51	56	0	3	40	1.17
4055--4117	25	2.5	25	94	0	108	55	0	4	39	1.21
4073--4117	12	3.7	12	82	5	63	60	0	2	37	1.09
5202--5424	30	7.4	30	93	0	374	34	22	18	24	1.96
6090--6250	64	2.5	62	78	9	164	25	24	18	31	1.98
8664--8826	30	5.4	30	91	0	245	33	22	17	26	1.96
8664--8851	90	2.1	91	86	1	261	34	22	17	25	1.96
8809--8904	31	3.1	30	74	12	88	32	20	19	27	1.97
9447--9503	20	2.8	20	91	0	96	28	21	21	29	1.98
11012--11088	20	3.9	20	68	14	61	50	0	0	49	1.00
10999--11063	30	2.1	31	88	11	98	49	0	0	50	1.00
10980--11075	38	2.6	39	83	6	128	50	0	0	50	1.00
10980--11087	38	2.9	38	81	9	109	50	0	0	49	1.00
11142--11201	30	2.1	30	82	11	74	53	0	6	40	1.27
11176--11258	42	2.0	42	83	4	105	51	2	1	44	1.22
20438--20899	112	4.1	112	93	1	766	45	14	14	24	1.83
20438--20899	223	2.1	224	92	1	766	45	14	14	24	1.83
21700--22051	182	1.9	182	95	1	634	43	13	16	27	1.85
22645--22692	23	2.1	23	88	0	69	37	16	8	37	1.79
23800--23848	24	2.0	24	92	0	80	10	12	24	53	1.69
23806--23861	24	2.3	24	84	0	76	14	10	19	55	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24266--24340	10	7.7	10	69	21	61	9	12	21	57	1.62
24272--24336	16	4.1	16	95	0	121	7	12	23	56	1.61
24406--24438	16	2.1	16	100	0	66	6	12	24	57	1.57
26511--26576	2	33.0	2	90	0	105	46	1	3	48	1.26
27765--27797	13	2.5	13	90	9	50	57	0	3	39	1.14
31697--31733	11	3.5	10	92	3	56	8	0	2	89	0.58
32984--33064	20	3.9	20	76	11	74	35	20	19	23	1.96
33049--33102	22	2.5	22	96	0	99	29	31	12	25	1.93
43421--43539	31	3.8	30	79	5	112	39	9	1	49	1.45
43588--43638	24	2.1	25	88	3	77	56	0	5	37	1.23
43632--43948	30	10.7	29	75	13	227	52	0	8	39	1.36
43642--43931	118	2.4	120	79	7	315	53	0	8	37	1.37
43587--43948	60	6.1	58	72	12	222	53	0	8	38	1.35
43939--43984	18	2.6	18	89	0	74	41	0	15	43	1.46
44557--44596	21	1.9	21	89	0	62	30	12	10	47	1.74
46876--46905	11	2.8	11	95	5	53	33	0	0	66	0.92
47674--47707	2	17.0	2	100	0	68	50	0	0	50	1.00
49309--49393	28	3.0	28	66	14	66	27	5	9	57	1.53
49315--49486	57	3.0	57	92	1	274	30	5	10	52	1.59
52946--53026	22	3.7	22	83	1	101	19	25	29	24	1.99
59912--59957	21	2.2	21	88	7	67	36	36	10	15	1.82
69488--69520	16	2.1	16	88	5	50	45	9	6	39	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69861--69899	2	19.5	2	100	0	78	51	0	0	48	1.00
75909--75942	16	2.1	16	94	0	59	32	26	8	32	1.87
78909--79147	74	3.2	73	76	15	213	44	3	8	43	1.51
78936--79196	37	7.1	37	82	8	268	42	3	8	45	1.51
78936--79196	77	3.5	71	82	10	276	42	3	8	45	1.51
85283--85344	20	3.0	20	80	2	79	22	37	25	14	1.92
87560--87617	22	2.4	24	80	19	75	39	0	43	17	1.49
87574--87620	22	2.1	22	100	0	94	38	0	38	23	1.55
87618--87672	21	2.7	20	74	5	56	30	9	1	58	1.40
87628--87685	28	2.1	28	100	0	116	31	10	3	55	1.50
88801--88958	38	4.3	38	73	14	150	43	4	7	44	1.52
88814--88964	72	2.1	75	84	10	197	41	4	7	47	1.52
88968--89009	22	1.9	22	85	0	57	23	4	4	66	1.30
90204--90232	13	2.2	13	100	0	58	20	0	0	79	0.74
90370--90399	13	2.3	13	94	0	51	36	0	3	60	1.14
98584--98644	23	2.8	22	75	5	61	55	3	13	27	1.53
99298--99374	37	2.1	37	83	9	95	48	2	3	45	1.34

Tables:   1

The End!