Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005938.1 Hibiscus syriacus cultivar Beakdansim tig00013945_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  119348

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3825--3902
20
3.8
20
73
14
59
28
23
16
32
1.96
3825--3882
20
2.7
20
81
10
62
27
20
18
32
1.97
6687--6816
70
1.9
69
83
1
170
50
13
14
22
1.77
8166--8326
79
2.1
77
83
2
196
29
18
16
36
1.93
9560--9591
3
10.7
3
100
0
64
31
0
0
68
0.90
11396--11436
20
2.0
20
95
0
73
34
29
12
24
1.91
15867--15901
13
2.7
13
100
0
70
28
17
31
22
1.96
20012--20101
45
2.0
45
84
4
119
28
12
24
34
1.91
24948--25021
15
5.1
14
76
19
55
58
1
0
40
1.07
24955--25019
3
21.0
3
81
6
76
60
1
0
38
1.07
24990--25025
18
2.0
18
94
0
63
58
0
0
41
0.98
25147--25943
76
10.5
76
96
1
1409
36
19
20
23
1.95
25147--25943
305
2.6
305
96
1
1445
36
19
20
23
1.95
26455--26509
22
2.5
22
90
0
92
41
12
10
34
1.78
27964--28037
36
2.1
34
82
9
87
32
20
14
32
1.93
38020--38093
15
5.1
14
76
19
55
58
1
0
40
1.07
38027--38091
3
21.0
3
81
6
76
60
1
0
38
1.07
38062--38097
18
2.0
18
94
0
63
58
0
0
41
0.98
41778--41805
2
14.0
2
100
0
56
50
0
0
50
1.00
53552--53601
21
2.4
21
100
0
100
18
38
24
20
1.93
56409--57125
54
13.4
54
81
6
779
33
17
24
24
1.97
56409--57116
105
6.6
105
81
6
780
33
17
25
24
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56405--57078
164
4.2
157
88
4
881
33
17
24
24
1.97
57097--57226
55
2.4
55
88
0
188
32
14
21
31
1.93
68132--68168
6
6.0
6
96
3
65
0
51
0
48
1.00
88323--88445
43
2.8
43
79
8
133
47
8
8
35
1.63
88815--88856
2
21.0
2
100
0
84
50
0
0
50
1.00
96991--98509
760
2.0
759
96
0
2790
30
15
19
34
1.93
99201--99239
17
2.4
16
82
4
51
71
2
0
25
0.98
99220--99266
19
2.5
19
82
6
60
74
2
2
21
1.03
101046--101104
27
2.2
26
81
9
64
67
3
1
27
1.16
114747--115572
409
2.0
409
98
0
1589
41
16
13
28
1.87

Tables:   1

The End!