genome.fa.s5939.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005939.1 Hibiscus syriacus cultivar Beakdansim tig00013949_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  103326

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6132--6160	8	3.8	8	95	4	51	82	0	6	10	0.83
6135--6181	19	2.5	20	80	16	55	76	0	14	8	1.01
6183--6292	46	2.4	46	90	0	166	41	13	20	23	1.88
9766--9801	18	1.9	19	88	5	56	16	2	2	77	1.00
10809--10837	10	2.7	11	89	10	51	37	0	0	62	0.96
11090--11149	29	2.1	28	93	3	102	30	3	0	66	1.07
14417--14452	2	18.0	2	100	0	72	50	0	0	50	1.00
19892--19945	26	2.1	26	85	0	72	25	11	25	37	1.89
22487--22583	23	4.1	23	73	4	86	56	14	13	15	1.67
22771--22820	14	3.6	14	86	0	73	58	14	12	16	1.64
23629--23655	3	9.0	3	100	0	54	33	0	0	66	0.92
25227--25295	29	2.4	30	80	4	79	36	0	2	60	1.11
26142--26174	2	16.5	2	100	0	66	51	0	48	0	1.00
27012--27062	19	2.6	20	90	3	77	43	23	17	15	1.88
27049--27102	20	2.7	20	94	0	90	51	18	18	11	1.74
27116--27369	123	2.1	123	91	0	409	36	16	25	21	1.94
27157--27359	103	2.0	103	94	0	352	36	16	25	21	1.94
27137--27367	20	11.4	20	88	2	300	36	16	25	21	1.94
27356--27399	20	2.2	20	87	0	61	54	15	15	13	1.71
27506--27549	20	2.2	20	91	0	70	11	18	15	54	1.70
27536--27586	19	2.6	20	90	3	77	15	17	23	43	1.88
28268--28367	28	3.5	28	75	17	114	36	5	4	55	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28253--28364	28	3.9	29	73	18	90	33	6	4	55	1.45
28672--28705	16	2.2	16	89	5	52	17	5	2	73	1.16
28672--28713	15	2.8	15	82	10	50	23	4	2	69	1.20
29193--29237	21	2.1	21	91	0	72	55	0	6	37	1.26
30820--30897	37	2.2	37	81	9	90	65	1	8	24	1.29
30854--30891	20	1.9	20	88	0	58	63	2	7	26	1.35
30890--30916	3	9.0	3	100	0	54	66	0	0	33	0.92
31393--31492	35	2.8	36	86	6	130	31	16	15	38	1.89
32002--32886	98	8.6	107	82	8	525	20	21	25	32	1.97
31954--32914	196	4.7	205	80	9	800	20	21	25	32	1.98
32495--32764	55	5.3	55	64	30	181	17	23	27	31	1.96
32425--32908	98	4.9	98	90	3	666	19	22	25	32	1.97
32550--32709	43	3.4	43	69	21	142	15	22	28	33	1.95
33411--33597	102	1.8	103	89	3	297	39	10	21	28	1.87
33511--33615	36	2.9	36	88	1	147	39	11	23	25	1.88
34473--34523	22	2.3	22	96	0	93	25	11	27	35	1.91
35135--35193	20	2.9	21	80	5	59	1	13	6	77	1.03
35168--35210	22	2.0	23	86	9	63	0	20	4	74	1.00
39466--39503	20	1.9	20	88	0	58	63	2	7	26	1.35
39460--39535	37	2.0	37	82	10	91	63	2	7	26	1.35
45377--45406	2	15.0	2	100	0	60	50	0	0	50	1.00
46485--46971	246	2.0	243	87	7	713	23	11	27	37	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47798--47855	31	1.9	30	85	3	80	22	10	5	62	1.47
50159--50184	2	13.0	2	100	0	52	50	0	0	50	1.00
59148--59189	19	2.2	19	83	12	50	21	2	7	69	1.25
66595--66680	35	2.4	36	88	1	129	43	24	1	31	1.62
66595--66695	35	2.9	35	85	4	114	43	24	1	29	1.65
67641--67718	35	2.2	35	88	0	111	34	1	21	42	1.61
78254--78317	26	2.5	26	86	0	92	31	17	21	29	1.96
79498--79545	20	2.4	20	100	0	96	18	29	14	37	1.91
84174--84215	17	2.4	17	84	11	50	16	23	0	59	1.37
85217--85332	37	3.2	35	80	13	119	43	10	4	41	1.58
85238--85332	37	2.5	37	86	5	129	43	8	4	44	1.54
85261--85348	37	2.4	38	88	5	137	44	9	3	43	1.52
93137--93178	19	2.2	19	83	12	50	21	2	7	69	1.25
100544--100629	35	2.4	36	88	1	129	43	24	1	31	1.62
100544--100644	35	2.9	35	85	4	114	43	24	1	29	1.65
101584--101661	35	2.2	35	88	0	111	34	1	21	42	1.61

Tables:   1

The End!