genome.fa.s5941.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005941.1 Hibiscus syriacus cultivar Beakdansim tig00013955_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87610

Tables:   1   

This is table  1  of  1  ( 74 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
371--409	15	2.7	14	84	7	51	20	10	28	41	1.85
5482--5537	21	2.7	21	91	0	85	28	3	23	44	1.70
6501--6545	2	22.5	2	100	0	90	51	0	0	48	1.00
16381--16422	21	2.0	20	82	13	50	21	0	38	40	1.53
17085--17134	26	1.9	26	100	0	100	48	4	0	48	1.20
18287--18353	29	2.3	29	82	10	75	49	2	11	35	1.55
18309--18375	29	2.3	29	82	7	82	47	2	5	43	1.43
18616--18697	22	3.7	22	90	0	119	28	18	36	17	1.93
21746--21822	24	3.2	24	94	0	127	12	12	16	57	1.66
21774--21821	10	4.4	10	76	19	51	14	10	14	60	1.59
21765--21817	14	4.1	14	79	18	60	15	9	13	62	1.54
22084--22159	23	3.5	22	80	5	84	11	10	18	59	1.60
22084--22160	10	7.1	10	73	15	64	11	10	18	59	1.59
34739--34773	4	8.8	4	100	0	70	51	25	0	22	1.48
35273--35329	27	2.2	25	81	12	62	49	10	15	24	1.76
35457--35504	20	2.3	21	78	7	53	41	6	20	31	1.77
35529--35562	16	2.1	17	88	5	52	32	8	11	47	1.71
35667--35713	21	2.2	21	84	0	58	25	21	17	36	1.94
36052--36103	21	2.5	21	81	3	61	38	19	25	17	1.93
36092--36185	20	4.7	20	80	7	100	34	24	18	23	1.96
36700--36766	19	3.5	19	85	2	89	47	25	16	10	1.78
36762--36927	20	9.1	19	72	18	129	12	21	22	43	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36767--36843	39	2.0	39	87	5	111	9	19	25	45	1.80
36815--36902	33	2.6	33	90	1	131	11	23	25	39	1.88
38957--39050	42	2.2	42	81	7	102	22	34	21	22	1.97
40408--40443	14	2.6	14	95	0	63	30	0	25	44	1.54
40550--40617	20	3.8	19	72	21	74	45	19	22	13	1.84
40622--40772	19	8.7	19	63	21	71	15	22	19	41	1.90
40626--40752	33	3.9	32	85	8	184	15	22	18	42	1.89
40619--40749	66	2.0	66	96	0	244	16	22	18	41	1.89
43045--43069	12	2.1	12	100	0	50	0	28	0	72	0.86
43244--43297	24	2.2	24	90	0	81	38	20	16	24	1.92
44354--44411	20	2.9	20	94	0	98	37	22	22	17	1.93
44434--44507	19	4.5	16	83	16	66	13	20	18	47	1.82
44430--44497	19	3.8	19	87	12	101	13	22	17	47	1.82
46520--46605	19	4.5	19	84	4	102	39	22	23	15	1.91
46521--46594	39	1.9	38	86	2	103	37	21	24	16	1.93
46653--46710	14	3.9	14	79	16	71	10	17	24	48	1.78
46636--46726	32	2.8	33	94	3	166	12	18	21	47	1.81
46711--46754	20	2.2	20	88	4	63	18	25	20	36	1.95
47247--47291	18	2.5	18	88	0	72	13	15	44	26	1.83
48611--48648	20	1.9	20	88	0	58	50	21	15	13	1.78
48912--48955	22	2.0	22	95	0	79	18	15	45	20	1.85
49181--49281	20	4.9	21	71	12	59	18	19	18	42	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49143--49237	20	4.7	20	78	2	82	24	17	23	34	1.96
49160--49299	41	3.4	42	81	3	144	20	21	20	37	1.94
49226--49318	20	4.6	20	78	4	96	17	24	18	39	1.91
49226--49318	41	2.3	41	100	0	186	17	24	18	39	1.91
50968--51170	2	105.5	2	70	24	127	40	1	3	53	1.28
50968--51141	77	2.4	76	83	13	221	40	1	4	54	1.27
50968--51174	75	2.6	79	76	19	202	40	1	3	54	1.28
50968--51185	113	1.9	115	82	12	281	40	1	4	53	1.28
51299--51443	35	4.1	34	78	12	130	45	6	8	40	1.59
51409--51466	23	2.5	23	88	0	80	44	6	10	37	1.65
51432--51514	38	2.2	38	87	8	118	46	4	8	39	1.55
51618--51645	2	14.0	2	100	0	56	50	0	0	50	1.00
51651--51701	23	2.4	21	83	9	59	23	0	0	76	0.79
51651--51699	18	2.7	19	81	12	59	24	0	0	75	0.80
51674--51699	6	4.3	6	100	0	52	15	0	0	84	0.62
53834--53863	13	2.3	13	94	0	51	76	10	0	13	1.01
63103--63168	32	2.1	32	94	0	114	33	19	31	15	1.93
68630--68688	29	2.0	29	96	0	109	23	13	11	50	1.74
69449--69487	17	2.3	17	95	0	69	30	23	25	20	1.98
69757--69834	40	2.0	40	84	5	104	38	12	20	28	1.89
69861--69903	10	4.0	10	77	16	50	13	11	16	58	1.64
69861--69914	23	2.3	24	93	3	92	14	12	14	57	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69864--69915	14	4.1	14	74	23	60	13	13	17	55	1.69
69999--70258	129	2.0	129	97	0	493	26	8	13	51	1.69
70386--70418	16	2.1	16	100	0	66	6	6	24	63	1.40
74432--74490	29	2.0	29	100	0	118	23	13	13	49	1.78
76450--76492	20	2.3	19	80	11	52	60	2	2	34	1.22
78130--78162	2	17.0	2	93	6	59	51	0	0	48	1.00
83968--84000	16	2.0	16	94	5	57	78	0	21	0	0.75
84449--84512	33	1.9	33	84	6	85	48	20	14	17	1.81

Tables:   1

The End!