Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005942.1 Hibiscus syriacus cultivar Beakdansim tig00013956_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66075

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4858--4900
21
2.0
21
82
8
52
25
20
18
34
1.96
8841--9061
64
3.5
64
82
6
234
34
19
18
27
1.95
9820--9885
29
2.2
29
86
2
87
21
19
27
31
1.97
10294--10321
2
14.0
2
100
0
56
50
0
0
50
1.00
14818--14897
30
2.7
30
92
1
126
20
21
25
33
1.97
16913--16951
20
2.0
20
89
0
60
35
23
20
20
1.96
24675--24705
2
15.5
2
93
0
53
0
51
0
48
1.00
27239--27341
46
2.2
46
96
0
188
43
4
9
41
1.59
27708--27764
26
2.2
25
81
9
62
64
1
3
29
1.20
27720--27765
17
2.6
18
86
10
67
65
0
4
30
1.12
38938--39028
31
3.1
29
71
18
80
29
25
27
17
1.97
48545--48638
40
2.3
40
88
1
143
42
4
11
41
1.61
49916--49968
19
2.8
19
97
0
97
64
5
7
22
1.41
51769--51849
40
2.0
40
95
2
146
41
3
0
54
1.18
55590--56243
127
5.2
127
96
0
1166
22
25
20
32
1.98
55596--56240
253
2.5
254
95
0
1166
22
24
20
32
1.98
56335--56384
2
25.0
2
100
0
100
50
0
0
50
1.00
56698--56798
34
3.0
34
89
0
166
38
1
4
54
1.33
57318--57367
21
2.4
21
96
0
91
22
30
30
18
1.97
59173--59248
29
2.5
31
81
14
86
55
0
0
44
0.99
59152--59249
15
6.8
15
68
25
61
57
0
0
42
0.99
59452--59596
59
2.4
59
84
6
177
24
30
26
18
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61674--61705
2
16.0
2
100
0
64
50
0
0
50
1.00
64489--64541
27
1.9
28
88
3
81
15
13
13
58
1.64

Tables:   1

The End!