genome.fa.s5943.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005943.1 Hibiscus syriacus cultivar Beakdansim tig00013957_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71341

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
355--383	13	2.1	14	93	6	51	68	0	0	31	0.89
1500--2390	202	4.3	204	75	11	707	36	18	16	28	1.93
1500--2390	413	2.2	409	78	8	934	36	18	16	28	1.93
5327--5370	18	2.5	17	82	10	52	68	2	6	22	1.25
6077--8571	205	12.1	207	75	9	1794	37	16	17	28	1.92
6463--6816	194	1.8	194	83	6	475	38	15	17	27	1.91
6633--8517	408	4.6	410	75	9	1401	37	16	17	28	1.92
9093--9150	26	2.2	26	84	6	73	27	1	1	68	1.08
9101--9201	52	2.0	52	81	7	120	31	1	1	64	1.16
9171--9236	2	34.0	2	85	11	66	40	1	0	57	1.08
9105--9255	42	3.6	43	77	12	147	33	1	1	63	1.14
9247--9334	12	7.5	12	73	13	67	20	5	1	72	1.11
9252--9349	23	4.2	23	72	15	67	20	7	1	71	1.15
9239--9321	19	4.3	19	70	19	55	19	4	1	74	1.06
9239--9368	59	2.2	60	78	14	137	18	7	1	72	1.17
12474--12543	9	7.8	9	75	12	54	77	1	15	5	1.03
12602--12739	69	2.0	69	94	0	240	38	22	13	25	1.91
13627--13719	32	2.9	32	91	1	141	26	13	25	33	1.94
14352--14548	106	1.9	106	85	0	277	32	23	19	24	1.98
14828--15000	87	2.0	87	94	0	301	33	17	11	36	1.86
14915--15149	101	2.3	102	88	1	346	31	18	11	37	1.87
15050--15122	37	2.0	37	88	0	110	24	19	13	42	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15187--15289	36	2.8	37	92	2	181	29	21	13	35	1.92
15200--15386	102	1.8	102	82	6	245	27	20	12	39	1.89
15187--15420	36	6.6	36	74	17	150	26	20	14	39	1.90
15406--15495	39	2.4	39	89	7	134	38	24	8	27	1.85
15503--15660	84	1.9	85	86	1	228	32	23	19	24	1.98
16676--16801	29	4.4	29	76	13	102	24	3	0	71	1.06
16677--16911	4	58.8	4	67	18	55	23	4	0	70	1.11
16697--16809	49	2.3	50	78	12	119	21	4	0	73	1.06
16728--16797	28	2.5	27	74	19	72	18	4	1	75	1.04
16711--16911	9	21.1	9	68	21	65	22	4	0	71	1.11
16754--16791	17	2.2	18	85	4	51	18	2	2	76	1.02
16750--16826	9	8.3	9	75	11	66	16	3	2	76	1.05
16706--16826	19	6.3	18	72	18	68	20	3	1	74	1.05
16705--16854	46	3.2	45	78	14	119	20	4	1	73	1.09
16787--16853	23	3.0	22	72	14	57	17	7	1	73	1.14
16841--16903	26	2.5	26	84	7	76	25	4	0	69	1.07
24416--24451	15	2.4	15	90	0	54	22	27	11	38	1.88
27396--27450	24	2.3	24	96	0	101	10	9	23	56	1.62
29660--30982	211	6.3	211	78	2	1228	37	16	16	30	1.90
32541--32852	54	5.8	54	85	2	394	27	18	19	34	1.95
32541--32852	162	1.9	162	86	1	437	27	18	19	34	1.95
34480--34532	20	2.7	19	85	5	61	41	15	28	15	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38669--38719	20	2.5	20	87	6	68	35	17	29	17	1.93
38741--38812	22	3.5	20	81	9	92	26	15	29	29	1.96
39151--39633	56	8.7	56	90	0	736	36	10	19	33	1.87
40607--40727	61	2.0	61	88	3	181	27	18	26	28	1.98
42695--44867	4	545.5	4	88	2	2903	45	24	4	25	1.71
47874--50300	211	11.5	211	81	2	2598	35	17	17	29	1.93
51751--51789	20	2.0	20	89	0	60	25	5	0	69	1.09
51749--51819	25	2.8	24	75	21	65	25	2	1	70	1.09
53036--53445	211	1.9	211	82	3	513	33	16	20	30	1.94
56623--56802	44	4.1	43	81	5	175	25	16	6	51	1.67
57599--57643	23	2.0	23	90	0	72	40	15	4	40	1.67
59311--59408	51	1.9	51	97	0	187	39	22	6	31	1.78
65901--66196	153	1.9	153	94	0	520	25	24	19	29	1.99
66530--66624	29	3.3	29	80	4	95	45	6	17	30	1.74

Tables:   1

The End!