genome.fa.s5945.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005945.1 Hibiscus syriacus cultivar Beakdansim tig00013959_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82036

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24175--24272	21	4.7	21	73	15	78	37	18	21	22	1.94
24240--24292	20	2.7	20	77	16	56	47	22	16	13	1.82
24301--24512	20	10.4	20	81	2	181	39	23	16	20	1.92
24301--24491	60	3.2	60	84	4	224	38	23	17	20	1.93
24240--24534	40	7.3	40	76	10	201	39	23	17	19	1.92
24589--24629	21	2.0	21	85	0	55	19	26	14	39	1.90
24626--24672	20	2.3	20	96	0	85	36	25	19	19	1.95
24635--24681	20	2.3	20	85	0	58	38	19	19	23	1.93
25532--25585	24	2.2	24	93	0	90	20	18	20	40	1.91
27999--28086	20	4.4	20	86	2	124	34	23	20	21	1.97
28097--28142	19	2.4	19	88	0	74	50	15	17	17	1.79
28188--28274	20	4.7	19	69	16	67	14	21	20	42	1.88
28376--28412	14	2.6	14	86	0	56	48	21	0	29	1.50
29785--29877	42	2.2	42	80	3	107	22	17	39	20	1.92
30359--30444	20	4.3	20	90	0	127	38	20	18	22	1.94
30479--30553	19	4.2	19	77	16	79	12	14	28	45	1.80
30492--30616	33	3.8	32	84	6	155	9	20	24	44	1.81
30539--30616	14	4.8	17	72	21	69	10	24	20	44	1.82
30704--31082	94	4.1	94	94	1	647	46	18	12	21	1.82
32778--32838	20	3.0	21	81	13	74	42	16	24	16	1.88
32834--32914	33	2.5	33	87	0	108	13	19	19	46	1.83
32899--32969	20	3.5	19	84	5	88	12	16	18	52	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33526--33719	20	9.6	20	76	7	167	18	15	25	39	1.91
33524--33719	61	3.2	61	75	7	184	18	15	25	39	1.91
33527--33719	81	2.4	81	85	2	280	18	15	25	39	1.90
33526--33719	41	4.8	41	83	3	232	18	15	25	39	1.91
46798--46831	17	2.0	17	100	0	68	23	11	0	64	1.26
46935--46976	21	2.0	21	100	0	84	52	14	4	28	1.62
51561--51601	22	1.9	21	90	5	64	70	4	0	24	1.06
61344--61383	15	2.7	15	88	0	53	10	20	60	10	1.57
63020--63226	64	3.2	64	81	2	202	35	18	18	27	1.95
63051--63229	64	2.8	64	85	1	216	34	20	18	26	1.96
63537--63572	12	3.0	12	91	0	63	33	5	25	36	1.79
63537--63605	24	2.8	26	83	12	85	37	5	24	31	1.79
69935--70091	64	2.5	64	83	8	194	33	17	20	28	1.95
70401--70434	12	2.8	12	90	0	50	32	5	26	35	1.81
70415--70467	23	2.2	26	90	10	85	39	5	24	30	1.78
70579--70611	15	2.2	15	94	0	57	18	18	30	33	1.94
74358--74415	12	4.8	12	73	0	53	37	18	1	41	1.61
78879--78941	23	2.8	23	90	2	101	31	26	23	17	1.97

Tables:   1

The End!