Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01005946.1 Hibiscus syriacus cultivar Beakdansim tig00013960_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2465359
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 1 of 11
Found at i:12 original size:7 final size:7
Alignment explanation
Indices: 1--3582 Score: 5583
Period size: 7 Copynumber: 525.7 Consensus size: 7
1 CCCGAAC
1 CCCGAAC
8 CCCGAAC
1 CCCGAAC
*
15 CCCGACC
1 CCCGAAC
22 CCCGAAC
1 CCCGAAC
29 CCCGAAC
1 CCCGAAC
*
36 CCC-AAA
1 CCCGAAC
42 CCCGAAC
1 CCCGAAC
49 CCCGAAC
1 CCCGAAC
56 CCCGAAC
1 CCCGAAC
63 CCCGAAC
1 CCCGAAC
70 CCCGAAC
1 CCCGAAC
77 CCCGAAC
1 CCCGAAC
84 CCCGAAC
1 CCCGAAC
91 CCCGAAC
1 CCCGAAC
98 CCCGAAC
1 CCCGAAC
105 CCCGAAC
1 CCCGAAC
112 CCCGAAC
1 CCCGAAC
119 CCCGAA-
1 CCCGAAC
125 CCCGAA-
1 CCCGAAC
131 CCCGAAC
1 CCCGAAC
138 CCCGAAC
1 CCCGAAC
145 CCCGAAC
1 CCCGAAC
152 CCCGAAC
1 CCCGAAC
159 CCCGAAC
1 CCCGAAC
166 CCCGAAC
1 CCCGAAC
173 CCCG-AC
1 CCCGAAC
179 CCCGAAC
1 CCCGAAC
186 CCCGAAC
1 CCCGAAC
193 CCCGAAC
1 CCCGAAC
200 CCCGAAC
1 CCCGAAC
207 CCCGAAC
1 CCCGAAC
214 CCCGAAC
1 CCCGAAC
221 CCCGAAC
1 CCCGAAC
228 CCCGAAC
1 CCCGAAC
235 CCCGAAC
1 CCCGAAC
242 CCCGAAC
1 CCCGAAC
249 CCCGAACC
1 CCCGAA-C
257 CCCGAAC
1 CCCGAAC
264 CCCGAAC
1 CCCGAAC
271 CCCGAA-
1 CCCGAAC
277 CCCGAAC
1 CCCGAAC
284 CCCGAAC
1 CCCGAAC
291 CCCGAAC
1 CCCGAAC
298 CCCGAA-
1 CCCGAAC
304 CCCGAA-
1 CCCGAAC
310 CCCGAAC
1 CCCGAAC
317 CCCG-AC
1 CCCGAAC
323 CCCGAAC
1 CCCGAAC
330 CCCGAAC
1 CCCGAAC
337 CCCGAAAC
1 CCCG-AAC
345 CCCGAAC
1 CCCGAAC
352 CCCGAA-
1 CCCGAAC
358 CCCGAAC
1 CCCGAAC
365 CCCGAAC
1 CCCGAAC
372 CCC-AA-
1 CCCGAAC
377 CCCGAAC
1 CCCGAAC
384 CCCGAAC
1 CCCGAAC
391 CCCGAAC
1 CCCGAAC
398 CCCGAA-
1 CCCGAAC
404 CCCGAAC
1 CCCGAAC
411 CCCGAAC
1 CCCGAAC
418 CCCGAAC
1 CCCGAAC
425 CCCGAAC
1 CCCGAAC
432 CCCGAAC
1 CCCGAAC
439 CCCGAAC
1 CCCGAAC
446 CCCGAACCC
1 CCCGAA--C
455 CCCGAA-
1 CCCGAAC
461 CCCGAAC
1 CCCGAAC
468 CCCGAAC
1 CCCGAAC
475 CCCGAAC
1 CCCGAAC
482 CCCGAAC
1 CCCGAAC
489 CCCGAAC
1 CCCGAAC
496 CCCGAAC
1 CCCGAAC
503 CCCGAAC
1 CCCGAAC
510 CCCGAACCC
1 CCCGAA--C
519 CCCG-AC
1 CCCGAAC
525 CCCGAAC
1 CCCGAAC
532 CCCGAAC
1 CCCGAAC
539 CCCGAAC
1 CCCGAAC
546 CCCGAAC
1 CCCGAAC
553 CCCGAAC
1 CCCGAAC
560 CCCGAAC
1 CCCGAAC
567 CCCGAAC
1 CCCGAAC
574 CCCGAAC
1 CCCGAAC
581 CCCGAAC
1 CCCGAAC
588 CCCGAAC
1 CCCGAAC
595 CCCGAA-
1 CCCGAAC
601 CCC-AAC
1 CCCGAAC
607 CCCGAA-
1 CCCGAAC
613 CCCGAAC
1 CCCGAAC
620 CCCGAA-
1 CCCGAAC
626 CCCGAAC
1 CCCGAAC
633 CCCGAACCC
1 CCCGAA--C
642 CCCGAACC
1 CCCGAA-C
650 CCCGAAC
1 CCCGAAC
657 CCCGAAC
1 CCCGAAC
664 CCCGAAC
1 CCCGAAC
671 CCCGAAC
1 CCCGAAC
678 CCCGAAC
1 CCCGAAC
685 CCCGAA-
1 CCCGAAC
691 CCCGAAC
1 CCCGAAC
698 CCCGAAC
1 CCCGAAC
705 CCCGAAC
1 CCCGAAC
712 CCCGAAC
1 CCCGAAC
719 CCCGAAC
1 CCCGAAC
726 CCCGAA-
1 CCCGAAC
732 CCCGAAC
1 CCCGAAC
739 CCCGAAC
1 CCCGAAC
746 CCCGAAC
1 CCCGAAC
753 CCCGAAC
1 CCCGAAC
760 CCCGAAC
1 CCCGAAC
767 CCCGAAC
1 CCCGAAC
774 CCCGAA-
1 CCCGAAC
780 CCCGAAC
1 CCCGAAC
787 CCCGAAC
1 CCCGAAC
794 CCCGAAC
1 CCCGAAC
801 CCCGAA-
1 CCCGAAC
807 CCCGAAC
1 CCCGAAC
814 CCCGAAC
1 CCCGAAC
821 CCCGAAC
1 CCCGAAC
828 CCCGAAC
1 CCCGAAC
835 CCCGAAC
1 CCCGAAC
842 CCCGAAC
1 CCCGAAC
*
849 CCCGAAA
1 CCCGAAC
856 CCCGAAC
1 CCCGAAC
863 CCCGAAC
1 CCCGAAC
870 CCCGAAC
1 CCCGAAC
877 CCCGAAC
1 CCCGAAC
884 CCCGAAC
1 CCCGAAC
891 CCCGAAC
1 CCCGAAC
898 CCCGAAC
1 CCCGAAC
905 CCCGAAC
1 CCCGAAC
912 CCCGAAC
1 CCCGAAC
919 CCCGAA-
1 CCCGAAC
925 CCCGAAC
1 CCCGAAC
932 CCCGAAC
1 CCCGAAC
939 CCCGAAC
1 CCCGAAC
946 CCCGAA-
1 CCCGAAC
952 CCC-AACCC
1 CCCGAA--C
960 CCCGAAC
1 CCCGAAC
967 CCCGAA-
1 CCCGAAC
973 CCCGAAC
1 CCCGAAC
980 CCCGAAC
1 CCCGAAC
987 CCCGAAC
1 CCCGAAC
994 CCCGAAC
1 CCCGAAC
1001 CCCGAAC
1 CCCGAAC
1008 CCCGAAC
1 CCCGAAC
1015 CCCGAAC
1 CCCGAAC
*
1022 CCCAAAC
1 CCCGAAC
1029 CCCGAAC
1 CCCGAAC
1036 CCCGAAC
1 CCCGAAC
1043 CCCGAAC
1 CCCGAAC
1050 CCCGAA-
1 CCCGAAC
1056 CCCGAAC
1 CCCGAAC
1063 CCCGAAC
1 CCCGAAC
1070 CCCGAAC
1 CCCGAAC
1077 CCCGAAC
1 CCCGAAC
1084 CCCGAA-
1 CCCGAAC
1090 CCCGAAC
1 CCCGAAC
1097 CCCGAA-
1 CCCGAAC
1103 CCCGAAC
1 CCCGAAC
1110 CCCGAA-
1 CCCGAAC
1116 CCCGAAC
1 CCCGAAC
1123 CCCGAAC
1 CCCGAAC
1130 CCCGAACC
1 CCCGAA-C
1138 CCCGAAC
1 CCCGAAC
1145 CCCGAAC
1 CCCGAAC
1152 CCCGAAC
1 CCCGAAC
1159 CCC-AAC
1 CCCGAAC
1165 CCC-AAC
1 CCCGAAC
1171 CCCGAAC
1 CCCGAAC
1178 CCCGAAC
1 CCCGAAC
1185 CCCGAAC
1 CCCGAAC
1192 CCCGAAC
1 CCCGAAC
1199 CCCGAAC
1 CCCGAAC
1206 CCCGAAC
1 CCCGAAC
1213 CCCGAAC
1 CCCGAAC
1220 CCCGAA-
1 CCCGAAC
1226 CCCGAAC
1 CCCGAAC
1233 CCCGAAC
1 CCCGAAC
1240 CCCGAA-
1 CCCGAAC
1246 CCC-AAC
1 CCCGAAC
1252 CCCGAAC
1 CCCGAAC
1259 CCCGAAC
1 CCCGAAC
1266 CCCGAAC
1 CCCGAAC
1273 CCCGAA-
1 CCCGAAC
1279 -CCGAAC
1 CCCGAAC
1285 CCCGAAC
1 CCCGAAC
1292 CCCG-AC
1 CCCGAAC
1298 CCCGAA-
1 CCCGAAC
1304 CCCGAAC
1 CCCGAAC
1311 CCCGAACC
1 CCCGAA-C
1319 CCCGAAC
1 CCCGAAC
*
1326 CCCCAAC
1 CCCGAAC
1333 CCCGAACCC
1 CCCGAA--C
1342 CCCGAA-
1 CCCGAAC
1348 CCCGAACCCC
1 CCCGAA---C
1358 CCCGAA-
1 CCCGAAC
1364 CCC-AA-
1 CCCGAAC
1369 CCCGAAC
1 CCCGAAC
1376 CCCGAAC
1 CCCGAAC
1383 CCCGAACCC
1 CCCGAA--C
1392 CCCGAAC
1 CCCGAAC
1399 CCCGAAC
1 CCCGAAC
1406 CCCGAAC
1 CCCGAAC
1413 CCCGAAC
1 CCCGAAC
1420 CCCGAA-
1 CCCGAAC
1426 CCCGAAC
1 CCCGAAC
1433 CCC-AA-
1 CCCGAAC
1438 CCCGAAC
1 CCCGAAC
1445 CCCGAAC
1 CCCGAAC
1452 CCC-AA-
1 CCCGAAC
1457 CCC-AAC
1 CCCGAAC
1463 CCCGAAC
1 CCCGAAC
1470 CCCGAAC
1 CCCGAAC
1477 CCCGAAC
1 CCCGAAC
1484 CCCGAACC
1 CCCGAA-C
1492 CCCGAA-
1 CCCGAAC
*
1498 CCC-AAA
1 CCCGAAC
1504 CCCGAAC
1 CCCGAAC
1511 CCCGAAC
1 CCCGAAC
1518 CCCGAA-
1 CCCGAAC
1524 CCCGAAC
1 CCCGAAC
1531 CCCGAAC
1 CCCGAAC
1538 CCCGAA-
1 CCCGAAC
1544 CCC-AAC
1 CCCGAAC
1550 CCCGAAC
1 CCCGAAC
1557 CCCG-A-
1 CCCGAAC
1562 CCCGAAC
1 CCCGAAC
1569 CCCGAAC
1 CCCGAAC
1576 CCC-AAC
1 CCCGAAC
1582 CCC-AAC
1 CCCGAAC
1588 CCCGAACC
1 CCCGAA-C
1596 CCCGAA-
1 CCCGAAC
1602 CCCGAAC
1 CCCGAAC
1609 CCCGAA-
1 CCCGAAC
1615 CCCGAA-
1 CCCGAAC
1621 CCC-AAC
1 CCCGAAC
1627 CCCGAA-
1 CCCGAAC
1633 CCC-AA-
1 CCCGAAC
1638 CCCGAAC
1 CCCGAAC
1645 CCCGAAC
1 CCCGAAC
*
1652 CCCAAAC
1 CCCGAAC
1659 CCCGAAC
1 CCCGAAC
1666 CCCGAAC
1 CCCGAAC
1673 CCCGAAC
1 CCCGAAC
1680 CCCGAAC
1 CCCGAAC
1687 CCCGAAC
1 CCCGAAC
1694 CCCGAAC
1 CCCGAAC
1701 CCCGAA-
1 CCCGAAC
1707 CCCG-AC
1 CCCGAAC
1713 CCCGAAC
1 CCCGAAC
1720 CCCGAAC
1 CCCGAAC
1727 CCCGAAC
1 CCCGAAC
1734 CCCGAAC
1 CCCGAAC
1741 CCCGAAC
1 CCCGAAC
1748 CCCGAAC
1 CCCGAAC
1755 CCCGAA-
1 CCCGAAC
1761 CCCGAAC
1 CCCGAAC
1768 CCCGAACCCC
1 CCCGAA---C
1778 CCCGAAC
1 CCCGAAC
1785 CCC-AA-
1 CCCGAAC
1790 CCCGAAC
1 CCCGAAC
1797 CCC-AAC
1 CCCGAAC
1803 CCCGAA-
1 CCCGAAC
1809 CCCGAAC
1 CCCGAAC
1816 CCCGAAC
1 CCCGAAC
1823 CCC-AAC
1 CCCGAAC
1829 CCCGAA-
1 CCCGAAC
1835 CCCGAA-
1 CCCGAAC
1841 CCCGAAC
1 CCCGAAC
1848 CCCGAAC
1 CCCGAAC
1855 CCCGAAC
1 CCCGAAC
1862 CCCGAAC
1 CCCGAAC
1869 CCCGAAC
1 CCCGAAC
1876 CCCGAAC
1 CCCGAAC
1883 CCCGAAC
1 CCCGAAC
1890 CCCGAAC
1 CCCGAAC
1897 CCCGAAC
1 CCCGAAC
1904 CCCGAAC
1 CCCGAAC
1911 CCCGAAC
1 CCCGAAC
1918 CCCGAAC
1 CCCGAAC
1925 CCCGAAC
1 CCCGAAC
1932 CCCGAAC
1 CCCGAAC
1939 CCCGAAC
1 CCCGAAC
1946 CCCGAAC
1 CCCGAAC
1953 CCCGAAC
1 CCCGAAC
1960 CCCGAAC
1 CCCGAAC
1967 CCCGAAC
1 CCCGAAC
1974 CCCGAAC
1 CCCGAAC
1981 CCCGAAC
1 CCCGAAC
1988 CCCGAA-
1 CCCGAAC
1994 CCC-AAC
1 CCCGAAC
2000 CCCGAAC
1 CCCGAAC
2007 CCCGAA-
1 CCCGAAC
2013 CCCG-AC
1 CCCGAAC
2019 CCCGAA-
1 CCCGAAC
2025 CCCGAACC
1 CCCGAA-C
2033 CCCGAAC
1 CCCGAAC
2040 CCCGAAC
1 CCCGAAC
2047 CCCGAA-
1 CCCGAAC
2053 CCC-AAC
1 CCCGAAC
2059 CCCGAA-
1 CCCGAAC
2065 CCCGAAC
1 CCCGAAC
2072 CCCGAAC
1 CCCGAAC
2079 CCCGAAAC
1 CCCG-AAC
2087 CCCGAAC
1 CCCGAAC
2094 CCCGAAC
1 CCCGAAC
2101 CCCGAAC
1 CCCGAAC
2108 CCCGAAC
1 CCCGAAC
2115 CCCG-A-
1 CCCGAAC
2120 CCCGAAC
1 CCCGAAC
2127 CCCGAAC
1 CCCGAAC
2134 CCCGAAC
1 CCCGAAC
2141 CCCGAAC
1 CCCGAAC
2148 CCCGAAC
1 CCCGAAC
2155 CCCGAAC
1 CCCGAAC
2162 CCCGAAC
1 CCCGAAC
2169 CCCGAAC
1 CCCGAAC
2176 CCCGAAC
1 CCCGAAC
2183 CCCGAAC
1 CCCGAAC
2190 CCCGAAC
1 CCCGAAC
2197 CCCGAAC
1 CCCGAAC
2204 CCCGAAC
1 CCCGAAC
2211 CCCGAA-
1 CCCGAAC
2217 CCCGAAC
1 CCCGAAC
2224 CCCGAAC
1 CCCGAAC
2231 CCCGAA-
1 CCCGAAC
2237 CCCGAAC
1 CCCGAAC
2244 CCCGAACC
1 CCCGAA-C
2252 CCCGAAC
1 CCCGAAC
2259 CCCGAAC
1 CCCGAAC
2266 CCCGAAC
1 CCCGAAC
2273 CCCGAAC
1 CCCGAAC
2280 CCCGAAC
1 CCCGAAC
2287 CCCGAAC
1 CCCGAAC
2294 CCCGAAC
1 CCCGAAC
*
2301 CCCCAAC
1 CCCGAAC
2308 CCCGAAC
1 CCCGAAC
2315 CCCGAAC
1 CCCGAAC
2322 CCCGAAC
1 CCCGAAC
2329 CCCGAAC
1 CCCGAAC
2336 CCCGAACCCC
1 CCCGAA---C
2346 CCCGAAC
1 CCCGAAC
2353 CCCGAAC
1 CCCGAAC
2360 CCCGAA-
1 CCCGAAC
2366 CCCGAAC
1 CCCGAAC
2373 CCCGAA-
1 CCCGAAC
2379 CCCGAAC
1 CCCGAAC
2386 CCCGAAC
1 CCCGAAC
2393 CCCGAAC
1 CCCGAAC
2400 CCCGAAC
1 CCCGAAC
2407 CCCGAAC
1 CCCGAAC
2414 CCCGAA-
1 CCCGAAC
2420 CCCGAAAC
1 CCCG-AAC
2428 CCCGAAC
1 CCCGAAC
2435 CCCGAAC
1 CCCGAAC
2442 CCCGAAC
1 CCCGAAC
2449 CCCGAAC
1 CCCGAAC
2456 CCCGAAC
1 CCCGAAC
2463 CCCGAAC
1 CCCGAAC
2470 CCCGAAC
1 CCCGAAC
2477 CCCGAAC
1 CCCGAAC
2484 CCCGAAC
1 CCCGAAC
2491 CCCGAAC
1 CCCGAAC
2498 CCCGAAC
1 CCCGAAC
2505 CCCGAAC
1 CCCGAAC
2512 CCCGAAC
1 CCCGAAC
2519 CCCGAAC
1 CCCGAAC
2526 CCCGAAC
1 CCCGAAC
2533 CCCGAA-
1 CCCGAAC
2539 CCCGAA-
1 CCCGAAC
2545 CCCGAAC
1 CCCGAAC
2552 CCCGAA-
1 CCCGAAC
2558 CCC--AC
1 CCCGAAC
2563 CCCGAAC
1 CCCGAAC
2570 CCCGAAC
1 CCCGAAC
2577 CCCGAAC
1 CCCGAAC
2584 CCCGAA-
1 CCCGAAC
2590 CCCGAACC
1 CCCGAA-C
2598 CCCGAAC
1 CCCGAAC
2605 CCCGAAC
1 CCCGAAC
2612 CCCGAAC
1 CCCGAAC
2619 CCCGAAC
1 CCCGAAC
2626 CCCGAAC
1 CCCGAAC
2633 CCCGAAC
1 CCCGAAC
2640 CCCGAAC
1 CCCGAAC
2647 CCCGAAC
1 CCCGAAC
2654 CCCGAAC
1 CCCGAAC
2661 CCCGAAC
1 CCCGAAC
2668 CCCGAAC
1 CCCGAAC
2675 CCCGAAC
1 CCCGAAC
2682 CCCGAAC
1 CCCGAAC
2689 CCCGAAC
1 CCCGAAC
2696 CCCGAAC
1 CCCGAAC
2703 CCCGAAC
1 CCCGAAC
2710 CCCGAAC
1 CCCGAAC
2717 CCCGAAC
1 CCCGAAC
2724 CCCGAAC
1 CCCGAAC
2731 CCCGAAC
1 CCCGAAC
2738 CCCGAAC
1 CCCGAAC
2745 CCCGAAC
1 CCCGAAC
2752 CCCGAAC
1 CCCGAAC
2759 CCC-AAC
1 CCCGAAC
2765 CCCGAAC
1 CCCGAAC
2772 CCCGAA-
1 CCCGAAC
2778 CCCGAAC
1 CCCGAAC
2785 CCCGAAC
1 CCCGAAC
2792 CCCGAAC
1 CCCGAAC
2799 CCCGAA-
1 CCCGAAC
2805 CCCGAAC
1 CCCGAAC
2812 CCCGAAC
1 CCCGAAC
2819 CCCGAAC
1 CCCGAAC
2826 CCCGAAC
1 CCCGAAC
2833 CCCGAAC
1 CCCGAAC
2840 CCCGAAC
1 CCCGAAC
2847 CCCGAAC
1 CCCGAAC
2854 CCCGAAC
1 CCCGAAC
2861 CCCGAAC
1 CCCGAAC
2868 CCCG-AC
1 CCCGAAC
2874 CCCG-AC
1 CCCGAAC
2880 CCCGAAC
1 CCCGAAC
2887 CCC---C
1 CCCGAAC
2891 CCCGAAC
1 CCCGAAC
2898 CCCGAAC
1 CCCGAAC
2905 CCCGAA-
1 CCCGAAC
2911 CCCGAAC
1 CCCGAAC
2918 CCCGAAC
1 CCCGAAC
2925 CCCGAAC
1 CCCGAAC
2932 CCCGAAC
1 CCCGAAC
2939 CCCG-AC
1 CCCGAAC
2945 CCCGAAC
1 CCCGAAC
2952 CCCGAAC
1 CCCGAAC
2959 CCCGAAC
1 CCCGAAC
2966 CCCGAAC
1 CCCGAAC
2973 CCCGAAC
1 CCCGAAC
2980 CCC---C
1 CCCGAAC
2984 CCC--AC
1 CCCGAAC
2989 CCCGAAC
1 CCCGAAC
2996 CCCGAAC
1 CCCGAAC
3003 CCCGAACC
1 CCCGAA-C
3011 CCCGAAC
1 CCCGAAC
3018 CCCGAAC
1 CCCGAAC
3025 CCCGAAC
1 CCCGAAC
3032 CCCGAAC
1 CCCGAAC
3039 CCCGAAC
1 CCCGAAC
3046 CCC-AAC
1 CCCGAAC
3052 CCCGAAC
1 CCCGAAC
3059 CCCGAAC
1 CCCGAAC
3066 CCCG-AC
1 CCCGAAC
3072 CCCGAAC
1 CCCGAAC
3079 CCCGAAC
1 CCCGAAC
3086 CCCGAAC
1 CCCGAAC
3093 CCCG-AC
1 CCCGAAC
3099 CCCGAAC
1 CCCGAAC
3106 CCCGAA-
1 CCCGAAC
3112 CCC-AAC
1 CCCGAAC
3118 CCCGAAC
1 CCCGAAC
3125 CCCGAA-
1 CCCGAAC
3131 CCC-AAC
1 CCCGAAC
3137 CCCGAAC
1 CCCGAAC
3144 CCCGAAC
1 CCCGAAC
3151 CCC-AAC
1 CCCGAAC
3157 CCCGAAC
1 CCCGAAC
3164 CCCGAAC
1 CCCGAAC
3171 CCCGAAC
1 CCCGAAC
3178 CCCGAAC
1 CCCGAAC
3185 CCCGAAC
1 CCCGAAC
3192 CCCGAAC
1 CCCGAAC
3199 CCCG-AC
1 CCCGAAC
3205 CCCGAAC
1 CCCGAAC
3212 CCCGAAC
1 CCCGAAC
3219 CCC--AC
1 CCCGAAC
3224 CCCGAAC
1 CCCGAAC
3231 CCCGAA-
1 CCCGAAC
3237 CCCG-AC
1 CCCGAAC
3243 CCCGAA-
1 CCCGAAC
3249 CCCGAAC
1 CCCGAAC
3256 CCCGAAC
1 CCCGAAC
3263 CCCGAA-
1 CCCGAAC
3269 -CCGAAC
1 CCCGAAC
3275 CCCGAAC
1 CCCGAAC
3282 CCCGAA-
1 CCCGAAC
3288 CCCGAAC
1 CCCGAAC
3295 CCCGAACCC
1 CCCGAA--C
3304 CCCGAAC
1 CCCGAAC
3311 CCCGAACC
1 CCCGAA-C
3319 CCCGAAC
1 CCCGAAC
3326 CCCGAAC
1 CCCGAAC
3333 CCCGAA-
1 CCCGAAC
3339 CCCGAAC
1 CCCGAAC
3346 CCCGAAGAAC
1 CCC---GAAC
3356 CCCGAA-
1 CCCGAAC
3362 CCCGAAC
1 CCCGAAC
3369 CCCGAAC
1 CCCGAAC
3376 CCCGAAC
1 CCCGAAC
3383 CCCGAA-
1 CCCGAAC
3389 CCCGAAAC
1 CCCG-AAC
3397 CCCGAAC
1 CCCGAAC
3404 CCCGAA-
1 CCCGAAC
3410 CCCGAAC
1 CCCGAAC
3417 CCCGAA-
1 CCCGAAC
3423 CCCGAAC
1 CCCGAAC
3430 CCCGAA-
1 CCCGAAC
3436 CCCGAA-
1 CCCGAAC
3442 CCCGAACCC
1 CCCGAA--C
3451 CCCGAAC
1 CCCGAAC
3458 CCCGAAC
1 CCCGAAC
3465 CCC-AA-
1 CCCGAAC
3470 CCCG-AC
1 CCCGAAC
*
3476 CCCGGAC
1 CCCGAAC
*
3483 CCCGGA-
1 CCCGAAC
*
3489 CCCGGAC
1 CCCGAAC
*
3496 CCCGGA-
1 CCCGAAC
*
3502 CCCGGAC
1 CCCGAAC
*
3509 CCCGGAC
1 CCCGAAC
*
3516 CCCGGAC
1 CCCGAAC
*
3523 CCCGGAC
1 CCCGAAC
*
3530 CCCGGAC
1 CCCGAAC
*
3537 CCCGGAC
1 CCCGAAC
*
3544 CCCGGAC
1 CCCGAAC
*
3551 CCCGGA-
1 CCCGAAC
*
3557 CCCGGAC
1 CCCGAAC
*
3564 CCCGGAC
1 CCCGAAC
*
3571 CCCGGAC
1 CCCGAAC
3578 CCCGA
1 CCCGA
3583 CCGTGGACCG
Statistics
Matches: 3390, Mismatches: 16, Indels: 338
0.91 0.00 0.09
Matches are distributed among these distances:
4 9 0.00
5 81 0.02
6 571 0.17
7 2552 0.75
8 102 0.03
9 48 0.01
10 27 0.01
ACGTcount: A:0.29, C:0.57, G:0.14, T:0.00
Consensus pattern (7 bp):
CCCGAAC
Found at i:3591 original size:7 final size:7
Alignment explanation
Indices: 3581--3664 Score: 131
Period size: 7 Copynumber: 12.6 Consensus size: 7
3571 CCCGGACCCC
3581 GACCGTG
1 GACCGTG
3588 GACCGTG
1 GACCGTG
3595 GACCGTG
1 GACCGTG
3602 GACCGTG
1 GACCGTG
3609 GACCGTG
1 GACCGTG
3616 GACCGTG
1 GACCGTG
3623 GACCGTG
1 GACCGTG
3630 GACCGTG
1 GACCGTG
*
3637 GACCCTG
1 GACCGTG
3644 GA-C-TG
1 GACCGTG
3649 GACC-TG
1 GACCGTG
3655 GACC-TG
1 GACCGTG
3661 GACC
1 GACC
3665 CTGACCCCTG
Statistics
Matches: 75, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
5 4 0.05
6 14 0.19
7 57 0.76
ACGTcount: A:0.15, C:0.31, G:0.39, T:0.14
Consensus pattern (7 bp):
GACCGTG
Found at i:8685 original size:10 final size:10
Alignment explanation
Indices: 8657--9329 Score: 216
Period size: 10 Copynumber: 66.9 Consensus size: 10
8647 AAACCTTTAC
**
8657 AAACCCTAGC
1 AAACCCTAAT
*
8667 AAATCCTAAT
1 AAACCCTAAT
8677 AAACCCTAAT
1 AAACCCTAAT
8687 AAACCCTCGTAACCT
1 AAA-CC-C-TAA--T
*
8702 -AACCCTTAT
1 AAACCCTAAT
*
8711 AAACCCTAAG
1 AAACCCTAAT
**
8721 AAACCCTAGC
1 AAACCCTAAT
*
8731 AAACCCTAGT
1 AAACCCTAAT
* *
8741 AAACTCTTAT
1 AAACCCTAAT
*
8751 AAACCCTAAC
1 AAACCCTAAT
*
8761 AAACCCTAGT
1 AAACCCTAAT
8771 AAACCCTAGA-
1 AAACCCTA-AT
** *
8781 AAACTATAAC
1 AAACCCTAAT
8791 AAACCCTAAT
1 AAACCCTAAT
*
8801 AAACCCTAGT
1 AAACCCTAAT
*
8811 AAACCCTCAT
1 AAACCCTAAT
** *
8821 AAAAACTAGT
1 AAACCCTAAT
* *
8831 AAACCTTAGT
1 AAACCCTAAT
* *
8841 AAATCCTTAT
1 AAACCCTAAT
*
8851 AAACCCTAGT
1 AAACCCTAAT
* *
8861 AAACCTTTAT
1 AAACCCTAAT
*
8871 AAACCCAAAT
1 AAACCCTAAT
*
8881 AAACCCTCAT
1 AAACCCTAAT
**
8891 AAACCCTAGG
1 AAACCCTAAT
*
8901 AAACCCTAAA
1 AAACCCTAAT
* * **
8911 AAAACTTAGC
1 AAACCCTAAT
*
8921 AAACCCTTAT
1 AAACCCTAAT
*
8931 AAACCCTAGT
1 AAACCCTAAT
** *
8941 AATTCCTAGT
1 AAACCCTAAT
* * *
8951 AAATCATAGT
1 AAACCCTAAT
* *
8961 AAACTCTTAT
1 AAACCCTAAT
8971 AAACCCTAGA-
1 AAACCCTA-AT
**
8981 AAACCCTAGC
1 AAACCCTAAT
**
8991 AAA-CCTAGG
1 AAACCCTAAT
9000 AAA-CCT-AT
1 AAACCCTAAT
*
9008 CAAATCCTAGA-
1 -AAACCCTA-AT
**
9019 AAACCCTAGG
1 AAACCCTAAT
* *
9029 AAATCCTACT
1 AAACCCTAAT
*
9039 AAACCCTAGAA
1 AAACCCTA-AT
9050 AAACCCTAGA-
1 AAACCCTA-AT
* *
9060 AAATCCTACT
1 AAACCCTAAT
* *
9070 AAACCCCAAAA
1 AAA-CCCTAAT
*
9081 AAAACCTAGA-
1 AAACCCTA-AT
9091 AAACCCTAAT
1 AAACCCTAAT
**
9101 AAACCCTTGT
1 AAACCCTAAT
**
9111 AAACCCTTGT
1 AAACCCTAAT
* **
9121 AAACCTTTGT
1 AAACCCTAAT
**
9131 AAACCCTCGT
1 AAACCCTAAT
* **
9141 AAAACCTAGG
1 AAACCCTAAT
* * **
9151 AAAACTTAGG
1 AAACCCTAAT
* **
9161 AAAACCTAGC
1 AAACCCTAAT
**
9171 AAACCCTTGT
1 AAACCCTAAT
* **
9181 AAATCCTAGC
1 AAACCCTAAT
*
9191 AAACCCTAGT
1 AAACCCTAAT
* *
9201 AAACCCTTAC
1 AAACCCTAAT
**
9211 AAACCCTAGC
1 AAACCCTAAT
9221 AAACCC-AAGT
1 AAACCCTAA-T
9231 AAACCCTAA-
1 AAACCCTAAT
* *
9240 GAACCTCTAAC
1 AAACC-CTAAT
**
9251 AAACCCTAGC
1 AAACCCTAAT
*
9261 AAACCCTAAG
1 AAACCCTAAT
**
9271 AAACCCTAGC
1 AAACCCTAAT
*
9281 AAACCCTAGT
1 AAACCCTAAT
* *
9291 AAACCATAAA
1 AAACCCTAAT
*
9301 AAACCCTAGT
1 AAACCCTAAT
*
9311 AAACTCTAAT
1 AAACCCTAAT
9321 AAACCCTAA
1 AAACCCTAA
9330 ACCCTAAACC
Statistics
Matches: 499, Mismatches: 140, Indels: 48
0.73 0.20 0.07
Matches are distributed among these distances:
9 22 0.04
10 438 0.88
11 28 0.06
12 3 0.01
13 5 0.01
14 2 0.00
15 1 0.00
ACGTcount: A:0.45, C:0.29, G:0.07, T:0.19
Consensus pattern (10 bp):
AAACCCTAAT
Found at i:8691 original size:30 final size:30
Alignment explanation
Indices: 8657--9329 Score: 311
Period size: 30 Copynumber: 22.0 Consensus size: 30
8647 AAACCTTTAC
* *
8657 AAACCCTAGCAAATCCTAATAAACCCTAAT
1 AAACCCTAGCAAACCCTAGTAAACCCTAAT
* * *
8687 AAACCCTCGTAACCTAACCCTTA-TAAACCCTAAG
1 AAA-CC-C-T-AGCAAACCC-TAGTAAACCCTAAT
* *
8721 AAACCCTAGCAAACCCTAGTAAACTCTTAT
1 AAACCCTAGCAAACCCTAGTAAACCCTAAT
*
8751 AAACCCTAACAAACCCTAGTAAACCCTAGAAAACTAT
1 AAACCCTAGCAAACCCTAGTAAACCCT-----A--AT
** *
8788 AACAAACCCTAATAAACCCTAGTAAACCCTCAT
1 ---AAACCCTAGCAAACCCTAGTAAACCCTAAT
** * * * *
8821 AAAAACTAGTAAACCTTAGTAAATCCTTAT
1 AAACCCTAGCAAACCCTAGTAAACCCTAAT
* * ** *
8851 AAACCCTAGTAAACCTTTATAAACCCAAAT
1 AAACCCTAGCAAACCCTAGTAAACCCTAAT
*** * *
8881 AAACCCTCATAAACCCTAGGAAACCCTAAA
1 AAACCCTAGCAAACCCTAGTAAACCCTAAT
* * *
8911 AAAACTTAGCAAACCCTTA-TAAACCCTAGT
1 AAACCCTAGCAAACCC-TAGTAAACCCTAAT
** * * * * *
8941 AATTCCTAGTAAATCATAGTAAACTCTTAT
1 AAACCCTAGCAAACCCTAGTAAACCCTAAT
* * **
8971 AAACCCTAGAAAACCCTAGCAAA-CCTAGG
1 AAACCCTAGCAAACCCTAGTAAACCCTAAT
* * * **
9000 AAA-CCTATCAAATCCTAGAAAACCCTAGG
1 AAACCCTAGCAAACCCTAGTAAACCCTAAT
* *
9029 AAATCCTA-CTAAACCCTAGAAAAACCCTAGA-
1 AAACCCTAGC-AAACCCTAG-TAAACCCTA-AT
* * ** *
9060 AAATCCTA-CTAAACCCCAAAAAAAACCTAGA-
1 AAACCCTAGC-AAA-CCCTAGTAAACCCTA-AT
** * **
9091 AAACCCTAATAAACCCTTGTAAACCCTTGT
1 AAACCCTAGCAAACCCTAGTAAACCCTAAT
* * * * * **
9121 AAACCTTTGTAAACCCTCGTAAAACCTAGG
1 AAACCCTAGCAAACCCTAGTAAACCCTAAT
* * * * * **
9151 AAAACTTAGGAAAACCTAGCAAACCCTTGT
1 AAACCCTAGCAAACCCTAGTAAACCCTAAT
* * *
9181 AAATCCTAGCAAACCCTAGTAAACCCTTAC
1 AAACCCTAGCAAACCCTAGTAAACCCTAAT
*
9211 AAACCCTAGCAAACCCAAGTAAACCCTAA-
1 AAACCCTAGCAAACCCTAGTAAACCCTAAT
* * * *
9240 GAACCTCTAACAAACCCTAGCAAACCCTAAG
1 AAACC-CTAGCAAACCCTAGTAAACCCTAAT
* *
9271 AAACCCTAGCAAACCCTAGTAAACCATAAA
1 AAACCCTAGCAAACCCTAGTAAACCCTAAT
* * *
9301 AAACCCTAGTAAACTCTAATAAACCCTAA
1 AAACCCTAGCAAACCCTAGTAAACCCTAA
9330 ACCCTAAACC
Statistics
Matches: 496, Mismatches: 119, Indels: 56
0.74 0.18 0.08
Matches are distributed among these distances:
28 15 0.03
29 23 0.05
30 347 0.70
31 51 0.10
32 6 0.01
33 5 0.01
34 19 0.04
35 2 0.00
37 2 0.00
40 26 0.05
ACGTcount: A:0.45, C:0.29, G:0.07, T:0.19
Consensus pattern (30 bp):
AAACCCTAGCAAACCCTAGTAAACCCTAAT
Found at i:9391 original size:7 final size:7
Alignment explanation
Indices: 9365--9875 Score: 769
Period size: 7 Copynumber: 73.6 Consensus size: 7
9355 TAAACCCTAA
*
9365 ACCCTGA
1 ACCCTGG
*
9372 ACCCTGA
1 ACCCTGG
*
9379 ACCCTGA
1 ACCCTGG
9386 ACCCTGG
1 ACCCTGG
9393 ACCCTGG
1 ACCCTGG
9400 ACCCTGG
1 ACCCTGG
9407 A-CCTGG
1 ACCCTGG
9413 ACCCTGG
1 ACCCTGG
9420 ACCCTGG
1 ACCCTGG
9427 ACCCTGG
1 ACCCTGG
9434 A-CCTGG
1 ACCCTGG
9440 ACCCTGG
1 ACCCTGG
9447 ACCCTGG
1 ACCCTGG
9454 ACCCTGG
1 ACCCTGG
9461 ACCCTGG
1 ACCCTGG
9468 ACCCTGG
1 ACCCTGG
9475 ACCCTGG
1 ACCCTGG
9482 ACCCTGG
1 ACCCTGG
9489 ACCCTGG
1 ACCCTGG
9496 ACCCTGG
1 ACCCTGG
9503 ACCCTGG
1 ACCCTGG
9510 ACCCTGG
1 ACCCTGG
9517 ACCCTGG
1 ACCCTGG
9524 ACCCTGG
1 ACCCTGG
9531 ACCCTGG
1 ACCCTGG
9538 ACCCTGG
1 ACCCTGG
9545 ACCCTGG
1 ACCCTGG
9552 ACCCTGG
1 ACCCTGG
9559 ACCCTGG
1 ACCCTGG
9566 ACCCTGG
1 ACCCTGG
9573 ACCCTGG
1 ACCCTGG
9580 ACCCTGG
1 ACCCTGG
9587 A-CCTGG
1 ACCCTGG
9593 ACCCTGG
1 ACCCTGG
9600 ACCCTGG
1 ACCCTGG
9607 ACCCTGG
1 ACCCTGG
9614 ACCCTGG
1 ACCCTGG
9621 ACCCTGG
1 ACCCTGG
*
9628 ACCGTGG
1 ACCCTGG
*
9635 ACCGTGG
1 ACCCTGG
*
9642 ACCGTGG
1 ACCCTGG
*
9649 ACCGTGG
1 ACCCTGG
*
9656 ACCGTGG
1 ACCCTGG
*
9663 ACCGTGG
1 ACCCTGG
*
9670 ACCGTGG
1 ACCCTGG
*
9677 ACCGTGG
1 ACCCTGG
*
9684 ACCGTGG
1 ACCCTGG
*
9691 ACCGTGG
1 ACCCTGG
*
9698 ACCGTGG
1 ACCCTGG
*
9705 ACCGTGG
1 ACCCTGG
*
9712 ACCGTGG
1 ACCCTGG
*
9719 ACCGTGG
1 ACCCTGG
9726 ACCCTGG
1 ACCCTGG
*
9733 ACCGTGG
1 ACCCTGG
*
9740 ACCGTGG
1 ACCCTGG
9747 ACCCTGG
1 ACCCTGG
9754 ACCCTGG
1 ACCCTGG
9761 ACCCTGG
1 ACCCTGG
9768 ACCCTGG
1 ACCCTGG
9775 ACCCTGG
1 ACCCTGG
9782 ACCCTGG
1 ACCCTGG
9789 ACCCTGG
1 ACCCTGG
9796 ACCCTGG
1 ACCCTGG
9803 ACCCTGG
1 ACCCTGG
9810 ACCCTGG
1 ACCCTGG
9817 ACCCTGG
1 ACCCTGG
*
9824 ACCCTGA
1 ACCCTGG
*
9831 ACCCTGA
1 ACCCTGG
*
9838 ACCCTGA
1 ACCCTGG
*
9845 ACCCTGA
1 ACCCTGG
*
9852 ACCCTGA
1 ACCCTGG
*
9859 ACCCTGA
1 ACCCTGG
9866 ACCCT-G
1 ACCCTGG
9872 ACCC
1 ACCC
9876 CTGACCCCTG
Statistics
Matches: 494, Mismatches: 7, Indels: 7
0.97 0.01 0.01
Matches are distributed among these distances:
6 22 0.04
7 472 0.96
ACGTcount: A:0.16, C:0.40, G:0.30, T:0.14
Consensus pattern (7 bp):
ACCCTGG
Found at i:9877 original size:7 final size:7
Alignment explanation
Indices: 9322--9967 Score: 380
Period size: 7 Copynumber: 92.7 Consensus size: 7
9312 AACTCTAATA
*
9322 AACCCTA
1 AACCCTG
*
9329 AACCCTA
1 AACCCTG
*
9336 AACCCTA
1 AACCCTG
*
9343 AACCCTA
1 AACCCTG
* *
9350 AACCATA
1 AACCCTG
*
9357 AACCCTA
1 AACCCTG
9364 AACCCTG
1 AACCCTG
9371 AACCCTG
1 AACCCTG
9378 AACCCTG
1 AACCCTG
9385 AACCCTG
1 AACCCTG
*
9392 GACCCTG
1 AACCCTG
*
9399 GACCCTG
1 AACCCTG
*
9406 GA-CCTG
1 AACCCTG
*
9412 GACCCTG
1 AACCCTG
*
9419 GACCCTG
1 AACCCTG
*
9426 GACCCTG
1 AACCCTG
*
9433 GA-CCTG
1 AACCCTG
*
9439 GACCCTG
1 AACCCTG
*
9446 GACCCTG
1 AACCCTG
*
9453 GACCCTG
1 AACCCTG
*
9460 GACCCTG
1 AACCCTG
*
9467 GACCCTG
1 AACCCTG
*
9474 GACCCTG
1 AACCCTG
*
9481 GACCCTG
1 AACCCTG
*
9488 GACCCTG
1 AACCCTG
*
9495 GACCCTG
1 AACCCTG
*
9502 GACCCTG
1 AACCCTG
*
9509 GACCCTG
1 AACCCTG
*
9516 GACCCTG
1 AACCCTG
*
9523 GACCCTG
1 AACCCTG
*
9530 GACCCTG
1 AACCCTG
*
9537 GACCCTG
1 AACCCTG
*
9544 GACCCTG
1 AACCCTG
*
9551 GACCCTG
1 AACCCTG
*
9558 GACCCTG
1 AACCCTG
*
9565 GACCCTG
1 AACCCTG
*
9572 GACCCTG
1 AACCCTG
*
9579 GACCCTG
1 AACCCTG
*
9586 GA-CCTG
1 AACCCTG
*
9592 GACCCTG
1 AACCCTG
*
9599 GACCCTG
1 AACCCTG
*
9606 GACCCTG
1 AACCCTG
*
9613 GACCCTG
1 AACCCTG
*
9620 GACCCTG
1 AACCCTG
* *
9627 GACCGTG
1 AACCCTG
* *
9634 GACCGTG
1 AACCCTG
* *
9641 GACCGTG
1 AACCCTG
* *
9648 GACCGTG
1 AACCCTG
* *
9655 GACCGTG
1 AACCCTG
* *
9662 GACCGTG
1 AACCCTG
* *
9669 GACCGTG
1 AACCCTG
* *
9676 GACCGTG
1 AACCCTG
* *
9683 GACCGTG
1 AACCCTG
* *
9690 GACCGTG
1 AACCCTG
* *
9697 GACCGTG
1 AACCCTG
* *
9704 GACCGTG
1 AACCCTG
* *
9711 GACCGTG
1 AACCCTG
* *
9718 GACCGTG
1 AACCCTG
*
9725 GACCCTG
1 AACCCTG
* *
9732 GACCGTG
1 AACCCTG
* *
9739 GACCGTG
1 AACCCTG
*
9746 GACCCTG
1 AACCCTG
*
9753 GACCCTG
1 AACCCTG
*
9760 GACCCTG
1 AACCCTG
*
9767 GACCCTG
1 AACCCTG
*
9774 GACCCTG
1 AACCCTG
*
9781 GACCCTG
1 AACCCTG
*
9788 GACCCTG
1 AACCCTG
*
9795 GACCCTG
1 AACCCTG
*
9802 GACCCTG
1 AACCCTG
*
9809 GACCCTG
1 AACCCTG
*
9816 GACCCTG
1 AACCCTG
*
9823 GACCCTG
1 AACCCTG
9830 AACCCTG
1 AACCCTG
9837 AACCCTG
1 AACCCTG
9844 AACCCTG
1 AACCCTG
9851 AACCCTG
1 AACCCTG
9858 AACCCTG
1 AACCCTG
9865 AACCCTG
1 AACCCTG
*
9872 ACCCCTG
1 AACCCTG
*
9879 ACCCCTG
1 AACCCTG
*
9886 ACCCCTG
1 AACCCTG
*
9893 ACCCCTG
1 AACCCTG
*
9900 ACCCCTG
1 AACCCTG
*
9907 AACCCTA
1 AACCCTG
*
9914 AACCCTA
1 AACCCTG
*
9921 AACCCTA
1 AACCCTG
*
9928 AACCCTA
1 AACCCTG
*
9935 AACCCTA
1 AACCCTG
*
9942 AACCCTA
1 AACCCTG
*
9949 AACCCCG
1 AACCCTG
*
9956 AACCCCG
1 AACCCTG
9963 AACCC
1 AACCC
9968 CGGACCCCGG
Statistics
Matches: 622, Mismatches: 14, Indels: 6
0.97 0.02 0.01
Matches are distributed among these distances:
6 18 0.03
7 604 0.97
ACGTcount: A:0.20, C:0.41, G:0.25, T:0.14
Consensus pattern (7 bp):
AACCCTG
Found at i:9968 original size:7 final size:7
Alignment explanation
Indices: 9949--9989 Score: 55
Period size: 7 Copynumber: 5.9 Consensus size: 7
9939 CTAAACCCTA
9949 AACCCCG
1 AACCCCG
9956 AACCCCG
1 AACCCCG
9963 AACCCCG
1 AACCCCG
*
9970 GACCCCG
1 AACCCCG
*
9977 GACCCCG
1 AACCCCG
*
9984 GACCCC
1 AACCCC
9990 AACATTAATG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
7 33 1.00
ACGTcount: A:0.22, C:0.59, G:0.20, T:0.00
Consensus pattern (7 bp):
AACCCCG
Found at i:9968 original size:14 final size:14
Alignment explanation
Indices: 9949--9989 Score: 64
Period size: 14 Copynumber: 2.9 Consensus size: 14
9939 CTAAACCCTA
*
9949 AACCCCGAACCCCG
1 AACCCCGGACCCCG
9963 AACCCCGGACCCCG
1 AACCCCGGACCCCG
*
9977 GACCCCGGACCCC
1 AACCCCGGACCCC
9990 AACATTAATG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.22, C:0.59, G:0.20, T:0.00
Consensus pattern (14 bp):
AACCCCGGACCCCG
Found at i:9974 original size:21 final size:21
Alignment explanation
Indices: 9950--9989 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
9940 TAAACCCTAA
9950 ACCCCGAACCCCGAACCCCGG
1 ACCCCGAACCCCGAACCCCGG
* *
9971 ACCCCGGACCCCGGACCCC
1 ACCCCGAACCCCGAACCCC
9990 AACATTAATG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.20, C:0.60, G:0.20, T:0.00
Consensus pattern (21 bp):
ACCCCGAACCCCGAACCCCGG
Found at i:14986 original size:10 final size:10
Alignment explanation
Indices: 14958--19015 Score: 1869
Period size: 10 Copynumber: 407.9 Consensus size: 10
14948 AAACCTTTAC
**
14958 AAACCCTAGC
1 AAACCCTAAT
*
14968 AAATCCTAAT
1 AAACCCTAAT
14978 AAACCCTAAT
1 AAACCCTAAT
**
14988 AAACCCTCGT
1 AAACCCTAAT
14998 AAA-CC---T
1 AAACCCTAAT
*
15004 -AACCCTTAT
1 AAACCCTAAT
*
15013 AAACCCTAAG
1 AAACCCTAAT
**
15023 AAACCCTAGC
1 AAACCCTAAT
*
15033 AAACCCTAGT
1 AAACCCTAAT
* *
15043 AAACTCTTAT
1 AAACCCTAAT
*
15053 AAACCCTAAC
1 AAACCCTAAT
*
15063 AAACCCTAGT
1 AAACCCTAAT
15073 AAACCCTAGA-
1 AAACCCTA-AT
** *
15083 AAACTATAAC
1 AAACCCTAAT
15093 AAACCCTAAT
1 AAACCCTAAT
*
15103 AAACCCTAGT
1 AAACCCTAAT
*
15113 AAACCCTCAT
1 AAACCCTAAT
** *
15123 AAAAACTAGT
1 AAACCCTAAT
* *
15133 AAACCTTAGT
1 AAACCCTAAT
* *
15143 AAATCCTTAT
1 AAACCCTAAT
*
15153 AAACCCTAGT
1 AAACCCTAAT
* *
15163 AAACCTTTAT
1 AAACCCTAAT
*
15173 AAACCCAAAT
1 AAACCCTAAT
*
15183 AAACCCTCAT
1 AAACCCTAAT
**
15193 AAACCCTAGG
1 AAACCCTAAT
*
15203 AAACCCTAAA
1 AAACCCTAAT
* * **
15213 AAAACTTAGC
1 AAACCCTAAT
*
15223 AAACCCTTAT
1 AAACCCTAAT
*
15233 AAACCCTAGT
1 AAACCCTAAT
** *
15243 AATTCCTAGT
1 AAACCCTAAT
* * *
15253 AAATCATAGT
1 AAACCCTAAT
* *
15263 AAACTCTTAT
1 AAACCCTAAT
15273 AAACCCTAGA-
1 AAACCCTA-AT
**
15283 AAACCCTAGC
1 AAACCCTAAT
**
15293 AAACCCTAGG
1 AAACCCTAAT
15303 AAA-CCT-AT
1 AAACCCTAAT
*
15311 CAAATCCTAGA-
1 -AAACCCTA-AT
**
15322 AAACCCTAGG
1 AAACCCTAAT
* *
15332 AAATCCTACT
1 AAACCCTAAT
*
15342 AAACCCTAGAA
1 AAACCCTA-AT
15353 AAACCCTAGA-
1 AAACCCTA-AT
* *
15363 AAATCCTACT
1 AAACCCTAAT
* *
15373 AAACCCCAAAAA
1 AAA-CCC-TAAT
15385 AAACCCTAGA-
1 AAACCCTA-AT
15395 AAACCCTAAT
1 AAACCCTAAT
**
15405 AAACCCTTGT
1 AAACCCTAAT
**
15415 AAACCCTTGT
1 AAACCCTAAT
* **
15425 AAACCTTTGT
1 AAACCCTAAT
**
15435 AAACCCTCGT
1 AAACCCTAAT
* **
15445 AAAACCTAGG
1 AAACCCTAAT
* * **
15455 AAAACTTAGG
1 AAACCCTAAT
* **
15465 AAAACCTAGC
1 AAACCCTAAT
**
15475 AAACCCTTGT
1 AAACCCTAAT
* **
15485 AAATCCTAGC
1 AAACCCTAAT
*
15495 AAACCCTAGT
1 AAACCCTAAT
* *
15505 AAACCCTTAC
1 AAACCCTAAT
**
15515 AAACCCTAGC
1 AAACCCTAAT
15525 AAACCC-AAGT
1 AAACCCTAA-T
15535 AAACCCTAA-
1 AAACCCTAAT
* *
15544 GAACCTCTAAC
1 AAACC-CTAAT
**
15555 AAACCCTAGC
1 AAACCCTAAT
*
15565 AAACCCTAAG
1 AAACCCTAAT
**
15575 AAACCCTAGC
1 AAACCCTAAT
*
15585 AAACCCTAGT
1 AAACCCTAAT
* *
15595 AAACCATAAA
1 AAACCCTAAT
*
15605 AAACCCTAGT
1 AAACCCTAAT
*
15615 AAACTCTAAT
1 AAACCCTAAT
*
15625 AAACCCTATT
1 AAACCCTAAT
15635 AAACTCCT-AT
1 AAAC-CCTAAT
*
15645 AACCCCTAA-
1 AAACCCTAAT
15654 AAACCCTAAT
1 AAACCCTAAT
**
15664 AAACCCTAGC
1 AAACCCTAAT
*
15674 AAACCCTAGT
1 AAACCCTAAT
** **
15684 AAACTTTAGG
1 AAACCCTAAT
** **
15694 AAAAACTAGC
1 AAACCCTAAT
* *
15704 AAATCCTAAG
1 AAACCCTAAT
**
15714 AAACCCTAGC
1 AAACCCTAAT
* *
15724 AAACTCTAGT
1 AAACCCTAAT
*
15734 AAACCCCT-TT
1 AAA-CCCTAAT
*
15744 AAACCCTTAT
1 AAACCCTAAT
*
15754 AAACCCTAGT
1 AAACCCTAAT
*
15764 AAACCCTTAT
1 AAACCCTAAT
*
15774 AAA-CCTTAT
1 AAACCCTAAT
* **
15783 AAACCTTAGC
1 AAACCCTAAT
*
15793 AAACCCTTAT
1 AAACCCTAAT
15803 AAACCCTAAT
1 AAACCCTAAT
* *
15813 AACCCCTAGT
1 AAACCCTAAT
* *
15823 AAACCTTTAT
1 AAACCCTAAT
*
15833 -AATCC---T
1 AAACCCTAAT
15839 AAACCCTAAT
1 AAACCCTAAT
* *
15849 AAATCCTAGT
1 AAACCCTAAT
*
15859 AAACCCTAGT
1 AAACCCTAAT
** *
15869 AAATACTTAT
1 AAACCCTAAT
**
15879 AAACCCTTGT
1 AAACCCTAAT
*
15889 AAACCCTAGT
1 AAACCCTAAT
* *
15899 AAATCCTAGT
1 AAACCCTAAT
*
15909 AAACCCTTAT
1 AAACCCTAAT
**
15919 AAACCCTAGC
1 AAACCCTAAT
**
15929 AAA-CCTTGT
1 AAACCCTAAT
*
15938 AAACCCTAGT
1 AAACCCTAAT
*
15948 AAACCCTAAC
1 AAACCCTAAT
*
15958 AAACCCTAGT
1 AAACCCTAAT
* *
15968 AACCCCTTAT
1 AAACCCTAAT
**
15978 AAACCCTTTT
1 AAACCCTAAT
15988 AAA-CCTAACT
1 AAACCCTAA-T
**
15998 AAACCCTTTT
1 AAACCCTAAT
*
16008 AAACCCTTAT
1 AAACCCTAAT
**
16018 AAA-CCTAGC
1 AAACCCTAAT
* *
16027 AAATCCTAAC
1 AAACCCTAAT
*
16037 AAACCCTAAC
1 AAACCCTAAT
**
16047 AAACCCTACC
1 AAACCCTAAT
16057 AAACCCTAAT
1 AAACCCTAAT
*
16067 AAACCCTTAT
1 AAACCCTAAT
16077 AAA-CCTCAAT
1 AAACCCT-AAT
*
16087 AAACCCTTAT
1 AAACCCTAAT
* *
16097 AAACACTTAT
1 AAACCCTAAT
*
16107 AAACCCTAGT
1 AAACCCTAAT
*
16117 AAACCCTAGT
1 AAACCCTAAT
* *
16127 AAACCTTATT
1 AAACCCTAAT
*
16137 AAACCCTAGT
1 AAACCCTAAT
*
16147 AAACCCTTAT
1 AAACCCTAAT
* *
16157 AAACTCTTAT
1 AAACCCTAAT
* *
16167 AAAACATAAT
1 AAACCCTAAT
**
16177 AAACCCTAGC
1 AAACCCTAAT
*
16187 AAA-CCAAAGT
1 AAACCCTAA-T
*
16197 AAACCATAA-
1 AAACCCTAAT
16206 AAACCC-ATAT
1 AAACCCTA-AT
*
16216 AAACCCTTAT
1 AAACCCTAAT
*
16226 AATCCCTAAT
1 AAACCCTAAT
16236 AAACCCTAAT
1 AAACCCTAAT
* *
16246 AAATCCTAGT
1 AAACCCTAAT
16256 AAACCCT-AT
1 AAACCCTAAT
* * **
16265 -TATCCTAGC
1 AAACCCTAAT
16274 AAACCCTAAT
1 AAACCCTAAT
**
16284 -AACCCTAGC
1 AAACCCTAAT
**
16293 AAACCCTAGC
1 AAACCCTAAT
16303 AAACCC-AATT
1 AAACCCTAA-T
16313 AAACCCCT-AT
1 AAA-CCCTAAT
*
16323 AAACCCTTAT
1 AAACCCTAAT
**
16333 AAACCCTAGG
1 AAACCCTAAT
**
16343 AAACCCTAGC
1 AAACCCTAAT
*
16353 AAACCCTTAT
1 AAACCCTAAT
**
16363 AGCCCCTAA-
1 AAACCCTAAT
*
16372 AAACCCTAGT
1 AAACCCTAAT
16382 AAACCCTTAA-
1 AAACCC-TAAT
16392 AAACCCTAGA-
1 AAACCCTA-AT
*
16402 AAACCCTAAC
1 AAACCCTAAT
*
16412 AAACCCTAAG
1 AAACCCTAAT
* *
16422 AAACCCAAAA
1 AAACCCTAAT
* *
16432 AAACCTTAAC
1 AAACCCTAAT
*
16442 AAACCCTAAC
1 AAACCCTAAT
16452 AAACCCT-AT
1 AAACCCTAAT
16461 GAAACCCTAAT
1 -AAACCCTAAT
**
16472 AAACCCTAGG
1 AAACCCTAAT
*
16482 AAACCCTAGT
1 AAACCCTAAT
*
16492 AAACCCTTAT
1 AAACCCTAAT
*
16502 AAACCCTAGT
1 AAACCCTAAT
*
16512 AAACCATAAT
1 AAACCCTAAT
*
16522 AAACCCTAGT
1 AAACCCTAAT
*** *
16532 AAATTTTAGT
1 AAACCCTAAT
** *
16542 AAAAACTAGT
1 AAACCCTAAT
*
16552 AAGCCCTAA-
1 AAACCCTAAT
16561 AAACCCTAAT
1 AAACCCTAAT
*
16571 AAACCCTTAT
1 AAACCCTAAT
*
16581 AAACCCTAGT
1 AAACCCTAAT
*
16591 AAACCCTTAT
1 AAACCCTAAT
*
16601 AAACCCT-AG
1 AAACCCTAAT
*
16610 AAACCCTAGT
1 AAACCCTAAT
**
16620 AAACCCTTGT
1 AAACCCTAAT
** **
16630 AAATACTTGT
1 AAACCCTAAT
*
16640 AAACCCTAGT
1 AAACCCTAAT
*
16650 AAACCCTTAT
1 AAACCCTAAT
* * *
16660 AAATCCTTAC
1 AAACCCTAAT
16670 AAACCCTAAT
1 AAACCCTAAT
*
16680 AAACCCTAGT
1 AAACCCTAAT
**
16690 AAACCCTAGC
1 AAACCCTAAT
*
16700 AAACCTTAAT
1 AAACCCTAAT
*
16710 AAACCCTAGT
1 AAACCCTAAT
**
16720 AAACCCTAGC
1 AAACCCTAAT
16730 AAACCCTAAT
1 AAACCCTAAT
*
16740 AAACCCTTAT
1 AAACCCTAAT
*
16750 -AACCCTTTAT
1 AAACCC-TAAT
*
16760 AAACCCTAGT
1 AAACCCTAAT
16770 AAACCC-ATAT
1 AAACCCTA-AT
*
16780 AAACCCTAAC
1 AAACCCTAAT
* *
16790 AAACCTTAGT
1 AAACCCTAAT
*
16800 AAACCCTAAC
1 AAACCCTAAT
*
16810 AAACCCTAGT
1 AAACCCTAAT
*
16820 AAATCCTAAT
1 AAACCCTAAT
**
16830 AAACCCTAGG
1 AAACCCTAAT
16840 AAACCCTAAACCTT
1 AAACCCT-AA---T
**
16854 AAACCCTAGC
1 AAACCCTAAT
*
16864 AAACCTTAAT
1 AAACCCTAAT
*
16874 AAACCCTAGT
1 AAACCCTAAT
*
16884 AAACTCTAAT
1 AAACCCTAAT
16894 AAACCCTAAT
1 AAACCCTAAT
* **
16904 AAAACCTTTT
1 AAACCCTAAT
* *
16914 AAACCTTTAT
1 AAACCCTAAT
**
16924 AAACCCTAGC
1 AAACCCTAAT
* *
16934 AAACTCTTAT
1 AAACCCTAAT
*
16944 AAACCCTTAT
1 AAACCCTAAT
**
16954 AAACCCTAGC
1 AAACCCTAAT
*
16964 AAACCCTTAT
1 AAACCCTAAT
**
16974 AAACCCTAGC
1 AAACCCTAAT
**
16984 AAACCCTAGC
1 AAACCCTAAT
**
16994 AAACCCTAGC
1 AAACCCTAAT
*
17004 AAACCCTAAG
1 AAACCCTAAT
17014 AAACCCTAGA-
1 AAACCCTA-AT
17024 AAACCCTAGA-
1 AAACCCTA-AT
*
17034 AAACCCTAGT
1 AAACCCTAAT
17044 AAACCCTAAT
1 AAACCCTAAT
**
17054 AAACCCTTGT
1 AAACCCTAAT
17064 AAACCCTAAT
1 AAACCCTAAT
* * *
17074 AAATCTTAGT
1 AAACCCTAAT
*** *
17084 AAATTTTAGT
1 AAACCCTAAT
** *
17094 AAAAACTAGT
1 AAACCCTAAT
*
17104 AAACCCTTAT
1 AAACCCTAAT
* *
17114 AAACCTTAGT
1 AAACCCTAAT
*
17124 AAACCCTTAT
1 AAACCCTAAT
*
17134 AAACCTTAAT
1 AAACCCTAAT
17144 AAA-CCT-AT
1 AAACCCTAAT
*
17152 AAAACCCTACT
1 -AAACCCTAAT
*
17163 AAACCCTTAT
1 AAACCCTAAT
** **
17173 AAATGCTTGT
1 AAACCCTAAT
17183 -AACCCTAAT
1 AAACCCTAAT
*
17192 AAACCCTAGT
1 AAACCCTAAT
*
17202 AAAACC-AAGT
1 AAACCCTAA-T
**
17212 AAACCCTTGT
1 AAACCCTAAT
***
17222 AAACCCTTGC
1 AAACCCTAAT
* *
17232 AAACCCTTAC
1 AAACCCTAAT
* **
17242 AAATCCTAGC
1 AAACCCTAAT
17252 AAACCCTAGA-
1 AAACCCTA-AT
* *
17262 AAACTCTAAAA
1 AAACCCT-AAT
*
17273 AAACCCTTAT
1 AAACCCTAAT
*
17283 AAACCCTAGT
1 AAACCCTAAT
*
17293 AAACCCTTAT
1 AAACCCTAAT
* *
17303 AAACCTTAGT
1 AAACCCTAAT
*
17313 AAACCCTTAT
1 AAACCCTAAT
** *
17323 AAATACTTAT
1 AAACCCTAAT
17333 AAACCCTAAT
1 AAACCCTAAT
*
17343 AAACCCTAGT
1 AAACCCTAAT
* *
17353 AACCCCTAGT
1 AAACCCTAAT
*
17363 AAACCCTTAT
1 AAACCCTAAT
* *
17373 AAACCATAGT
1 AAACCCTAAT
*
17383 AAA-CCTGAGT
1 AAACCCT-AAT
*
17393 AAACCCTTAT
1 AAACCCTAAT
** *
17403 AAAATCTAGT
1 AAACCCTAAT
* **
17413 TAACCCTAGC
1 AAACCCTAAT
**
17423 AAACCCTTGT
1 AAACCCTAAT
* *
17433 AAACCTTAAC
1 AAACCCTAAT
*
17443 AAACCCTAGT
1 AAACCCTAAT
* *
17453 AAAACCTAAC
1 AAACCCTAAT
* * *
17463 AAACCATTAC
1 AAACCCTAAT
17473 AAACCCTAGA-
1 AAACCCTA-AT
*
17483 AAACCCTTAT
1 AAACCCTAAT
* *
17493 AAACCTTTAT
1 AAACCCTAAT
*
17503 AAACCCTAGT
1 AAACCCTAAT
*
17513 AAACCCTTAT
1 AAACCCTAAT
* *
17523 AAACTCTTAT
1 AAACCCTAAT
*
17533 AAACCCTTAT
1 AAACCCTAAT
* *
17543 AAACCTTAGT
1 AAACCCTAAT
**
17553 AAACCCTTGT
1 AAACCCTAAT
*
17563 AAACCCTATT
1 AAACCCTAAT
* *
17573 AAATCCTAGT
1 AAACCCTAAT
**
17583 AAACCCTAGC
1 AAACCCTAAT
**
17593 AAACCCTAGC
1 AAACCCTAAT
*
17603 AAACCCTAGT
1 AAACCCTAAT
* *
17613 AAATCCTAGT
1 AAACCCTAAT
**
17623 AAACCCTAGC
1 AAACCCTAAT
*
17633 AAATCCTAGA-
1 AAACCCTA-AT
17643 AAACCCTAAT
1 AAACCCTAAT
*
17653 AAACCCTAGT
1 AAACCCTAAT
* * *
17663 AAATCATAGT
1 AAACCCTAAT
*
17673 AAACCATAAT
1 AAACCCTAAT
*
17683 AAACCCTAGT
1 AAACCCTAAT
* * *
17693 CAACACTTAT
1 AAACCCTAAT
* *
17703 AAAGCCTTAT
1 AAACCCTAAT
* **
17713 AAATCCTAGC
1 AAACCCTAAT
* *
17723 AAACACTAAC
1 AAACCCTAAT
* **
17733 AAACCTTAGC
1 AAACCCTAAT
** *
17743 AAACTATTAT
1 AAACCCTAAT
*
17753 AAACCCTAAC
1 AAACCCTAAT
**
17763 AAACCCTAGC
1 AAACCCTAAT
* * *
17773 AAATCTTAGT
1 AAACCCTAAT
*
17783 AAACCCTAAC
1 AAACCCTAAT
**
17793 AAACCCTAGG
1 AAACCCTAAT
* *
17803 AAACCCAAAG
1 AAACCCTAAT
* *
17813 AAACCCTTAC
1 AAACCCTAAT
**
17823 AAACCCTAGC
1 AAACCCTAAT
*
17833 AAATCCTAAT
1 AAACCCTAAT
*
17843 AAACCCTATT
1 AAACCCTAAT
* *
17853 AAATCCTAAA
1 AAACCCTAAT
*
17863 AAACCCTAGT
1 AAACCCTAAT
*
17873 AAATCCTAAT
1 AAACCCTAAT
*
17883 AAACCCTAGT
1 AAACCCTAAT
* *
17893 AAATCCTAGT
1 AAACCCTAAT
* **
17903 AAACCCCAGC
1 AAACCCTAAT
*
17913 AAATCCTAGA-
1 AAACCCTA-AT
* *
17923 AAACCCCACT
1 AAACCCTAAT
*
17933 AAACCCTAGT
1 AAACCCTAAT
* *
17943 AAACACTAGT
1 AAACCCTAAT
* **
17953 AAATCCTTGT
1 AAACCCTAAT
*
17963 AAACCCTATT
1 AAACCCTAAT
17973 AAACCCTAAT
1 AAACCCTAAT
*
17983 AAACCCTAGT
1 AAACCCTAAT
*
17993 AAACCCTTAT
1 AAACCCTAAT
* *
18003 GAACCCTAGT
1 AAACCCTAAT
**
18013 AGTCCCTTAA-
1 AAACCC-TAAT
*
18023 AAACCCTTAT
1 AAACCCTAAT
* *
18033 AAACTCTAGT
1 AAACCCTAAT
**
18043 AAACCCTTTT
1 AAACCCTAAT
*
18053 AAACCTTAAT
1 AAACCCTAAT
*
18063 AAACCCTAGT
1 AAACCCTAAT
**
18073 AAACCCTTCT
1 AAACCCTAAT
18083 AAACCCT-AT
1 AAACCCTAAT
*
18092 TAACCCTAAT
1 AAACCCTAAT
*
18102 AAACCCTTAT
1 AAACCCTAAT
* *
18112 AAA-ACTACT
1 AAACCCTAAT
*
18121 AAACCCTAGT
1 AAACCCTAAT
* *
18131 GAACCCTTAT
1 AAACCCTAAT
* **
18141 AAATCCTTGT
1 AAACCCTAAT
* **
18151 AAACCTTGGT
1 AAACCCTAAT
*
18161 AAATCCTAAT
1 AAACCCTAAT
18171 AAACCCT-AT
1 AAACCCTAAT
* *
18180 CAAATCCTAAA
1 -AAACCCTAAT
* *
18191 AAATCCTAGT
1 AAACCCTAAT
*
18201 AAATCCTAAT
1 AAACCCTAAT
*
18211 AAACCCTAGT
1 AAACCCTAAT
*
18221 AAATCCTAAT
1 AAACCCTAAT
* **
18231 AAACCCCAGC
1 AAACCCTAAT
*
18241 AAATCCTAGA-
1 AAACCCTA-AT
* *
18251 AAACCCCACT
1 AAACCCTAAT
*
18261 AAACCCTAGT
1 AAACCCTAAT
* *
18271 AAACACTAGT
1 AAACCCTAAT
* **
18281 AAATCCTTGT
1 AAACCCTAAT
*
18291 AAACCCTATT
1 AAACCCTAAT
18301 AAACCCTAAT
1 AAACCCTAAT
* *
18311 AAACCTTAGT
1 AAACCCTAAT
*
18321 AAACCCTTAT
1 AAACCCTAAT
* *
18331 GAACCCTAGT
1 AAACCCTAAT
**
18341 AGTCCCTTAA-
1 AAACCC-TAAT
*
18351 AAACCCTTAT
1 AAACCCTAAT
*
18361 AAACCCTAGT
1 AAACCCTAAT
**
18371 AAACCCTTTT
1 AAACCCTAAT
*
18381 AAACCTTAAT
1 AAACCCTAAT
*
18391 AAACCCTAGT
1 AAACCCTAAT
**
18401 AAACCCTTCT
1 AAACCCTAAT
18411 AAACCCT-AT
1 AAACCCTAAT
*
18420 TAACCCTAAT
1 AAACCCTAAT
*
18430 AAACCCTTAT
1 AAACCCTAAT
*
18440 AAA-ACTAAT
1 AAACCCTAAT
*
18449 AAACCCTAGT
1 AAACCCTAAT
* *
18459 GAACCCTTAT
1 AAACCCTAAT
* *
18469 AAATCCTTAT
1 AAACCCTAAT
* *
18479 AAACCTTAGT
1 AAACCCTAAT
* * *
18489 AAATCTTAGT
1 AAACCCTAAT
* *
18499 AAACCTTAGT
1 AAACCCTAAT
18509 AAACCCTAAT
1 AAACCCTAAT
*
18519 AATCCCT-AT
1 AAACCCTAAT
18528 -AACCC-AAGT
1 AAACCCTAA-T
* **
18537 AATCTTTAAT
1 AAACCCTAAT
* *
18547 AAATCCTAGT
1 AAACCCTAAT
**
18557 AAACCCTTGT
1 AAACCCTAAT
* *
18567 ATACCCTTAT
1 AAACCCTAAT
* *
18577 AAATCCTAGT
1 AAACCCTAAT
*
18587 AAACCCTTAT
1 AAACCCTAAT
*
18597 AAACCCTAGT
1 AAACCCTAAT
*
18607 ACACCCTAAT
1 AAACCCTAAT
* *
18617 ATACCCTAGT
1 AAACCCTAAT
18627 AAACCCTAAT
1 AAACCCTAAT
*
18637 AAACCCTAGT
1 AAACCCTAAT
* ** *
18647 TAACATTTAT
1 AAACCCTAAT
*
18657 AAACCCTTAT
1 AAACCCTAAT
18667 AAACCCTAAT
1 AAACCCTAAT
18677 AAACCCTAAT
1 AAACCCTAAT
* * *
18687 ACACCTTAGT
1 AAACCCTAAT
18697 AAACCCT--T
1 AAACCCTAAT
*
18705 GAACACCCTAGT
1 -AA-ACCCTAAT
* *
18717 ACACCCTAGT
1 AAACCCTAAT
** *
18727 ACGCCCTAGT
1 AAACCCTAAT
18737 AAACCCTAAT
1 AAACCCTAAT
*
18747 AAACCCTATT
1 AAACCCTAAT
*
18757 AAATCCTAAT
1 AAACCCTAAT
**
18767 AAACCCTTGT
1 AAACCCTAAT
* **
18777 AGACCCTTGT
1 AAACCCTAAT
*** *
18787 AAATATTAGT
1 AAACCCTAAT
18797 AAACCCTAAT
1 AAACCCTAAT
*
18807 AAACCCTAGT
1 AAACCCTAAT
* *
18817 AAATCTTAAT
1 AAACCCTAAT
*
18827 AAACCCTAGT
1 AAACCCTAAT
*
18837 AAACCCTTAT
1 AAACCCTAAT
*
18847 AAACCCTAGT
1 AAACCCTAAT
*** *
18857 AAATTATTAT
1 AAACCCTAAT
18867 AAACCCTAAT
1 AAACCCTAAT
* * *
18877 AAATCATAGT
1 AAACCCTAAT
*
18887 AAA-CCTGAGT
1 AAACCCT-AAT
*
18897 AAACCCTTAT
1 AAACCCTAAT
* *
18907 AAATCCTAGT
1 AAACCCTAAT
18917 AAACCCTAAT
1 AAACCCTAAT
* *
18927 AAACTCTAGT
1 AAACCCTAAT
18937 AAACCCTAAT
1 AAACCCTAAT
* *
18947 ATACCCTATT
1 AAACCCTAAT
* * *
18957 ACACTCTAGT
1 AAACCCTAAT
* *
18967 AAAGCCTAGT
1 AAACCCTAAT
* *
18977 AAACCATAGT
1 AAACCCTAAT
18987 AAACCCTAAT
1 AAACCCTAAT
* *
18997 AAATCCTAGT
1 AAACCCTAAT
19007 AAACCCTAA
1 AAACCCTAA
19016 CCCCAAAAAA
Statistics
Matches: 3072, Mismatches: 867, Indels: 218
0.74 0.21 0.05
Matches are distributed among these distances:
5 2 0.00
6 4 0.00
7 4 0.00
8 13 0.00
9 171 0.06
10 2787 0.91
11 77 0.03
12 6 0.00
13 1 0.00
14 7 0.00
ACGTcount: A:0.43, C:0.28, G:0.06, T:0.23
Consensus pattern (10 bp):
AAACCCTAAT
Found at i:14992 original size:30 final size:30
Alignment explanation
Indices: 14958--19015 Score: 2098
Period size: 30 Copynumber: 135.6 Consensus size: 30
14948 AAACCTTTAC
* *
14958 AAACCCTAGCAAATCCTAATAAACCCTAAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* *
14988 AAACCCTCGTAAA-CC---T-AACCCTTAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
** *
15013 AAACCCTAAG-AAACCCTAGCAAACCCTAGT
1 AAACCCT-AGTAAACCCTAATAAACCCTAAT
* * *
15043 AAACTCTTA-TAAACCCTAACAAACCCTAGT
1 AAAC-CCTAGTAAACCCTAATAAACCCTAAT
* ** *
15073 AAACCCTAGAAAACTATAACAAACCCTAAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* ** *
15103 AAACCCTAGTAAACCCTCATAAAAACTAGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * *
15133 AAACCTTAGTAAATCCTTATAAACCCTAGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * *
15163 AAACCTTTA-TAAACCCAAATAAACCCTCAT
1 AAACC-CTAGTAAACCCTAATAAACCCTAAT
* * * * **
15193 AAACCCTAGGAAACCCTAAAAAAACTTAGC
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* ** *
15223 AAACCCTTA-TAAACCCTAGTAATTCCTAGT
1 AAACCC-TAGTAAACCCTAATAAACCCTAAT
* * * *
15253 AAATCATAGTAAACTCTTATAAACCCTAGA-
1 AAACCCTAGTAAACCCTAATAAACCCTA-AT
* **
15283 AAACCCTAGCAAACCCTAGGAAA-CCT-AT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * ** * *
15311 CAAATCCTAGAAAACCCTAGGAAATCCTACT
1 -AAACCCTAGTAAACCCTAATAAACCCTAAT
* * *
15342 AAACCCTAGAAAAACCCTAGA-AAATCCTACT
1 AAACCCTAG-TAAACCCTA-ATAAACCCTAAT
* **
15373 AAACCCCAAAAAAAACCCTAGA-AAACCCTAAT
1 AAA-CCC-TAGTAAACCCTA-ATAAACCCTAAT
* ** * **
15405 AAACCCTTGTAAACCCTTGTAAACCTTTGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * ** * * **
15435 AAACCCTCGTAAAACCTAGGAAAACTTAGG
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * ** * **
15465 AAAACCTAGCAAACCCTTGTAAATCCTAGC
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * **
15495 AAACCCTAGTAAACCCTTACAAACCCTAGC
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * *
15525 AAACCCAAGTAAACCCTAA-GAACCTCTAAC
1 AAACCCTAGTAAACCCTAATAAACC-CTAAT
* * **
15555 AAACCCTAGCAAACCCTAAGAAACCCTAGC
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * *
15585 AAACCCTAGTAAACCATAAAAAACCCTAGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * *
15615 AAACTCTAATAAACCCTATTAAACTCCT-AT
1 AAACCCTAGTAAACCCTAATAAAC-CCTAAT
* * **
15645 AACCCCTA-AAAACCCTAATAAACCCTAGC
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
** ** ** **
15674 AAACCCTAGTAAACTTTAGGAAAAACTAGC
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* ** * *
15704 AAATCCTAAG-AAACCCTAGCAAACTCTAGT
1 AAACCCT-AGTAAACCCTAATAAACCCTAAT
* * *
15734 AAACCCCT-TTAAACCCTTATAAACCCTAGT
1 AAA-CCCTAGTAAACCCTAATAAACCCTAAT
* * **
15764 AAACCCTTA-TAAA-CCTTATAAACCTTAGC
1 AAACCC-TAGTAAACCCTAATAAACCCTAAT
* *
15793 AAACCCTTA-TAAACCCTAATAACCCCTAGT
1 AAACCC-TAGTAAACCCTAATAAACCCTAAT
* * * *
15823 AAACCTTTATAATCCTAAACCCTAATAAATCCTAGT
1 AAACC---CT-A--GTAAACCCTAATAAACCCTAAT
** * **
15859 AAACCCTAGTAAATACTTATAAACCCTTGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * *
15889 AAACCCTAGTAAATCCTAGTAAACCCTTAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* ** *
15919 AAACCCTAGCAAA-CCTTGTAAACCCTAGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
** * * *
15948 AAACCCTAACAAACCCTAGTAACCCCTTAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
** **
15978 AAACCCTTTTAAA-CCTAACTAAACCCTTTT
1 AAACCCTAGTAAACCCTAA-TAAACCCTAAT
** * *
16008 AAACCCTTA-TAAA-CCTAGCAAATCCTAAC
1 AAACCC-TAGTAAACCCTAATAAACCCTAAT
** **
16037 AAACCCTAACAAACCCTACCAAACCCTAAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
*
16067 AAACCCTTA-TAAA-CCTCAATAAACCCTTAT
1 AAACCC-TAGTAAACCCT-AATAAACCCTAAT
* * *
16097 AAACACTTA-TAAACCCTAGTAAACCCTAGT
1 AAAC-CCTAGTAAACCCTAATAAACCCTAAT
* * * *
16127 AAACCTTATTAAACCCTAGTAAACCCTTAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * **
16157 AAACTCTTA-TAAAACATAATAAACCCTAGC
1 AAAC-CCTAGTAAACCCTAATAAACCCTAAT
** *
16187 AAACCAAAGTAAACCATAA-AAACCC-ATAT
1 AAACCCTAGTAAACCCTAATAAACCCTA-AT
*
16216 AAACCCTTA-TAATCCCTAATAAACCCTAAT
1 AAACCC-TAGTAAACCCTAATAAACCCTAAT
* * * **
16246 AAATCCTAGTAAACCCT-AT-TATCCTAGC
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* ** **
16274 AAACCCTAAT-AACCCTAGCAAACCCTAGC
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * *
16303 AAACCCAATTAAACCCCT-ATAAACCCTTAT
1 AAACCCTAGTAAA-CCCTAATAAACCCTAAT
* ** *
16333 AAACCCTAGGAAACCCTAGCAAACCCTTAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
** * *
16363 AGCCCCTA-AAAACCCTAGTAAACCCTTAA-
1 AAACCCTAGTAAACCCTAATAAACCC-TAAT
* * *
16392 AAACCCTAGAAAACCCTAACAAACCCTAAG
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* ** * * *
16422 AAACCCAAAAAAACCTTAACAAACCCTAAC
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
**
16452 AAACCCTA-TGAAACCCTAATAAACCCTAGG
1 AAACCCTAGT-AAACCCTAATAAACCCTAAT
* *
16482 AAACCCTAGTAAACCCTTATAAACCCTAGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * *** *
16512 AAACCATAATAAACCCTAGTAAATTTTAGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
** *
16542 AAAAACTAGTAAGCCCTAA-AAACCCTAAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* *
16571 AAACCCTTA-TAAACCCTAGTAAACCCTTAT
1 AAACCC-TAGTAAACCCTAATAAACCCTAAT
* **
16601 AAACCCTAG-AAACCCTAGTAAACCCTTGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
** * * *
16630 AAATACTTGTAAACCCTAGTAAACCCTTAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * *
16660 AAATCCTTA-CAAACCCTAATAAACCCTAGT
1 AAA-CCCTAGTAAACCCTAATAAACCCTAAT
* * *
16690 AAACCCTAGCAAACCTTAATAAACCCTAGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* *
16720 AAACCCTAGCAAACCCTAATAAACCCTTAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
*
16750 -AACCCTTTA-TAAACCCTAGTAAACCC-ATAT
1 AAACCC--TAGTAAACCCTAATAAACCCTA-AT
** * * *
16780 AAACCCTAACAAACCTTAGTAAACCCTAAC
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* **
16810 AAACCCTAGTAAATCCTAATAAACCCTAGG
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* ** *
16840 AAACCCTAAACCTTAAACCCTAGCAAACCTTAAT
1 AAACCCT--A--GTAAACCCTAATAAACCCTAAT
*
16874 AAACCCTAGTAAACTCTAATAAACCCTAAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* ** * * **
16904 AAAACCTTTTAAACCTTTATAAACCCTAGC
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * **
16934 AAACTCTTA-TAAACCCTTATAAACCCTAGC
1 AAAC-CCTAGTAAACCCTAATAAACCCTAAT
** ** **
16964 AAACCCTTATAAACCCTAGCAAACCCTAGC
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * **
16994 AAACCCTAGCAAACCCTAAGAAACCCTAGA
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* *
17024 AAACCCTAGAAAACCCTAGTAAACCCTAAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * *
17054 AAACCCTTGTAAACCCTAATAAATCTTAGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
*** ** * *
17084 AAATTTTAGTAAAAACTAGTAAACCCTTAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * *
17114 AAACCTTAGTAAACCCTTATAAACCTTAAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* *
17144 AAA-CCTA-TAAAACCCTACTAAACCCTTAT
1 AAACCCTAGT-AAACCCTAATAAACCCTAAT
** * *
17173 AAATGCTTGT-AACCCTAATAAACCCTAGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * ** ***
17202 AAAACCAAGTAAACCCTTGTAAACCCTTGC
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * **
17232 AAACCCTTA-CAAATCCTAGCAAACCCTAGA-
1 AAACCC-TAGTAAACCCTAATAAACCCTA-AT
* ** * *
17262 AAACTCTAAAAAAACCCTTATAAACCCTAGT
1 AAACCCT-AGTAAACCCTAATAAACCCTAAT
* * *
17293 AAACCCTTA-TAAACCTTAGTAAACCCTTAT
1 AAACCC-TAGTAAACCCTAATAAACCCTAAT
* * *
17323 AAATACTTA-TAAACCCTAATAAACCCTAGT
1 AAA-CCCTAGTAAACCCTAATAAACCCTAAT
* * * *
17353 AACCCCTAGTAAACCCTTATAAACCATAGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* ** *
17383 AAA-CCTGAGTAAACCCTTATAAAATCTAGT
1 AAACCCT-AGTAAACCCTAATAAACCCTAAT
* * ** * *
17413 TAACCCTAGCAAACCCTTGTAAACCTTAAC
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * * *
17443 AAACCCTAGTAAAACCTAACAAACCATTAC
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * *
17473 AAACCCTAGAAAACCCTTATAAACCTTTAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * *
17503 AAACCCTAGTAAACCCTTATAAACTCTTAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * **
17533 AAACCCTTA-TAAACCTTAGTAAACCCTTGT
1 AAACCC-TAGTAAACCCTAATAAACCCTAAT
* * * **
17563 AAACCCTATTAAATCCTAGTAAACCCTAGC
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * *
17593 AAACCCTAGCAAACCCTAGTAAATCCTAGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* *
17623 AAACCCTAGCAAATCCTAGA-AAACCCTAAT
1 AAACCCTAGTAAACCCTA-ATAAACCCTAAT
* * * *
17653 AAACCCTAGTAAATCATAGTAAACCATAAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * * *
17683 AAACCCTAGTCAACACTTATAAAGCCTTAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * * * **
17713 AAATCCTAGCAAACACTAACAAACCTTAGC
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
*
17743 AAA--CTA-T------T-ATAAACCCTAAC
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * * *
17763 AAACCCTAGCAAATCTTAGTAAACCCTAAC
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * * *
17793 AAACCCTAGGAAACCCAAAGAAACCCTTAC
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * *
17823 AAACCCTAGCAAATCCTAATAAACCCTATT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* ** * *
17853 AAATCCTAAAAAACCCTAGTAAATCCTAAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * **
17883 AAACCCTAGTAAATCCTAGTAAACCCCAGC
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * * *
17913 AAATCCTAGAAAACCCCACTAAACCCTAGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * ** *
17943 AAACACTAGTAAATCCTTGTAAACCCTATT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * *
17973 AAACCCTAATAAACCCTAGTAAACCCTTAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* ** *
18003 GAACCCTAGTAGTCCCTTAA-AAACCCTTAT
1 AAACCCTAGTAAACCC-TAATAAACCCTAAT
* ** *
18033 AAACTCTAGTAAACCCTTTTAAACCTTAAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
**
18063 AAACCCTAGTAAACCCTTCTAAACCCT-AT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * * *
18092 TAACCCTAATAAACCCTTATAAAA-CTACT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * **
18121 AAACCCTAGTGAACCCTTATAAATCCTTGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * *
18151 AAACCTTGGTAAATCCTAATAAACCCT-AT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* ** * * *
18180 CAAATCCTAAAAAATCCTAGTAAATCCTAAT
1 -AAACCCTAGTAAACCCTAATAAACCCTAAT
* * **
18211 AAACCCTAGTAAATCCTAATAAACCCCAGC
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * * *
18241 AAATCCTAGAAAACCCCACTAAACCCTAGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * ** *
18271 AAACACTAGTAAATCCTTGTAAACCCTATT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * *
18301 AAACCCTAATAAACCTTAGTAAACCCTTAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* ** *
18331 GAACCCTAGTAGTCCCTTAA-AAACCCTTAT
1 AAACCCTAGTAAACCC-TAATAAACCCTAAT
** *
18361 AAACCCTAGTAAACCCTTTTAAACCTTAAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
**
18391 AAACCCTAGTAAACCCTTCTAAACCCT-AT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * *
18420 TAACCCTAATAAACCCTTATAAA-ACTAAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * *
18449 AAACCCTAGTGAACCCTTATAAATCCTTAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * * * *
18479 AAACCTTAGTAAATCTTAGTAAACCTTAGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * *
18509 AAACCCTAATAATCCCT-ATAACCCAAGTAATCTTTAAT
1 AAACCCTAGTAAACCCTAATAAACC-------C--TAAT
* ** * *
18547 AAATCCTAGTAAACCCTTGTATACCCTTAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * *
18577 AAATCCTAGTAAACCCTTATAAACCCTAGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * *
18607 ACACCCTAATATACCCTAGTAAACCCTAAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* ** * *
18637 AAACCCTAGTTAACATTTATAAACCCTTAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * *
18667 AAACCCTAATAAACCCTAATACACCTTAGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * *
18697 AAACCCTTG-AACACCCTAGTACACCCTAGT
1 AAACCCTAGTAA-ACCCTAATAAACCCTAAT
** *
18727 ACGCCCTAGTAAACCCTAATAAACCCTATT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * ** * **
18757 AAATCCTAATAAACCCTTGTAGACCCTTGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
*** *
18787 AAATATTAGTAAACCCTAATAAACCCTAGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * * *
18817 AAATCTTAATAAACCCTAGTAAACCCTTAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
*** *
18847 AAACCCTAGTAAATTATTATAAACCCTAAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * *
18877 AAATCATAGTAAA-CCTGAGTAAACCCTTAT
1 AAACCCTAGTAAACCCT-AATAAACCCTAAT
* * *
18907 AAATCCTAGTAAACCCTAATAAACTCTAGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * * * *
18937 AAACCCTAATATACCCTATTACACTCTAGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * *
18967 AAAGCCTAGTAAACCATAGTAAACCCTAAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
*
18997 AAATCCTAGTAAACCCTAA
1 AAACCCTAGTAAACCCTAA
19016 CCCCAAAAAA
Statistics
Matches: 3114, Mismatches: 776, Indels: 276
0.75 0.19 0.07
Matches are distributed among these distances:
20 12 0.00
21 1 0.00
22 3 0.00
25 18 0.01
26 4 0.00
27 7 0.00
28 27 0.01
29 416 0.13
30 2413 0.77
31 112 0.04
32 31 0.01
33 3 0.00
34 22 0.01
36 24 0.01
38 17 0.01
39 4 0.00
ACGTcount: A:0.43, C:0.28, G:0.06, T:0.23
Consensus pattern (30 bp):
AAACCCTAGTAAACCCTAATAAACCCTAAT
Found at i:15392 original size:32 final size:32
Alignment explanation
Indices: 15321--15410 Score: 128
Period size: 32 Copynumber: 2.8 Consensus size: 32
15311 CAAATCCTAG
* * *
15321 AAAACCCTAGGAAATCCTACTAAA-CCCTAGA
1 AAAACCCTAGAAAATCCTACTAAACCCCAAAA
15352 AAAACCCTAGAAAATCCTACTAAACCCCAAAA
1 AAAACCCTAGAAAATCCTACTAAACCCCAAAA
* *
15384 AAAACCCTAGAAAACCCTAATAAACCC
1 AAAACCCTAGAAAATCCTACTAAACCC
15411 TTGTAAACCC
Statistics
Matches: 53, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
31 23 0.43
32 30 0.57
ACGTcount: A:0.50, C:0.31, G:0.06, T:0.13
Consensus pattern (32 bp):
AAAACCCTAGAAAATCCTACTAAACCCCAAAA
Found at i:19015 original size:20 final size:20
Alignment explanation
Indices: 14958--19014 Score: 2235
Period size: 20 Copynumber: 203.4 Consensus size: 20
14948 AAACCTTTAC
* *
14958 AAACCCTAGCAAATCCTAAT
1 AAACCCTAGTAAACCCTAAT
* **
14978 AAACCCTAATAAACCCTCGT
1 AAACCCTAGTAAACCCTAAT
*
14998 AAA-CC---T-AACCCTTAT
1 AAACCCTAGTAAACCCTAAT
**
15013 AAACCCTAAG-AAACCCTAGC
1 AAACCCT-AGTAAACCCTAAT
* *
15033 AAACCCTAGTAAACTCTTAT
1 AAACCCTAGTAAACCCTAAT
** *
15053 AAACCCTAACAAACCCTAGT
1 AAACCCTAGTAAACCCTAAT
* ** *
15073 AAACCCTAGAAAACTATAAC
1 AAACCCTAGTAAACCCTAAT
* *
15093 AAACCCTAATAAACCCTAGT
1 AAACCCTAGTAAACCCTAAT
** *
15113 AAACCCTCA-TAAAAACTAGT
1 AAACCCT-AGTAAACCCTAAT
* * *
15133 AAACCTTAGTAAATCCTTAT
1 AAACCCTAGTAAACCCTAAT
* *
15153 AAACCCTAGTAAACCTTTAT
1 AAACCCTAGTAAACCCTAAT
* * *
15173 AAACCCAAATAAACCCTCAT
1 AAACCCTAGTAAACCCTAAT
* *
15193 AAACCCTAGGAAACCCTAAA
1 AAACCCTAGTAAACCCTAAT
* * * *
15213 AAAACTTAGCAAACCCTTAT
1 AAACCCTAGTAAACCCTAAT
** *
15233 AAACCCTAGTAATTCCTAGT
1 AAACCCTAGTAAACCCTAAT
* * * *
15253 AAATCATAGTAAACTCTTAT
1 AAACCCTAGTAAACCCTAAT
* **
15273 AAACCCTAGAAAACCCTAGC
1 AAACCCTAGTAAACCCTAAT
*
15293 AAACCCTAGGAAA-CCT-AT
1 AAACCCTAGTAAACCCTAAT
* * **
15311 CAAATCCTAGAAAACCCTAGG
1 -AAACCCTAGTAAACCCTAAT
* * *
15332 AAATCCTACTAAACCCTAGAA
1 AAACCCTAGTAAACCCTA-AT
* * *
15353 AAACCCTAGAAAATCCTACT
1 AAACCCTAGTAAACCCTAAT
* **
15373 AAACCCCAAAAAAAACCCTAGA-
1 AAA-CCC-TAGTAAACCCTA-AT
* **
15395 AAACCCTAATAAACCCTTGT
1 AAACCCTAGTAAACCCTAAT
* * **
15415 AAACCCTTGTAAACCTTTGT
1 AAACCCTAGTAAACCCTAAT
* * **
15435 AAACCCTCGTAAAACCTAGG
1 AAACCCTAGTAAACCCTAAT
* * * * **
15455 AAAACTTAGGAAAACCTAGC
1 AAACCCTAGTAAACCCTAAT
* * **
15475 AAACCCTTGTAAATCCTAGC
1 AAACCCTAGTAAACCCTAAT
* *
15495 AAACCCTAGTAAACCCTTAC
1 AAACCCTAGTAAACCCTAAT
*
15515 AAACCCTAGCAAACCC-AAGT
1 AAACCCTAGTAAACCCTAA-T
*
15535 AAACCCTA--AGAACCTCTAAC
1 AAACCCTAGTA-AACC-CTAAT
* *
15555 AAACCCTAGCAAACCCTAAG
1 AAACCCTAGTAAACCCTAAT
* *
15575 AAACCCTAGCAAACCCTAGT
1 AAACCCTAGTAAACCCTAAT
* ** *
15595 AAACCATAAAAAACCCTAGT
1 AAACCCTAGTAAACCCTAAT
* * *
15615 AAACTCTAATAAACCCTATT
1 AAACCCTAGTAAACCCTAAT
*
15635 AAACTCCTA-TAACCCCTAA-
1 AAAC-CCTAGTAAACCCTAAT
* **
15654 AAACCCTAATAAACCCTAGC
1 AAACCCTAGTAAACCCTAAT
** **
15674 AAACCCTAGTAAACTTTAGG
1 AAACCCTAGTAAACCCTAAT
** * * *
15694 AAAAACTAGCAAATCCTAAG
1 AAACCCTAGTAAACCCTAAT
* * *
15714 AAACCCTAGCAAACTCTAGT
1 AAACCCTAGTAAACCCTAAT
* *
15734 AAACCCCT-TTAAACCCTTAT
1 AAA-CCCTAGTAAACCCTAAT
*
15754 AAACCCTAGTAAACCCTTAT
1 AAACCCTAGTAAACCCTAAT
* * **
15774 AAACCTTA-TAAACCTTAGC
1 AAACCCTAGTAAACCCTAAT
15793 AAACCCTTA-TAAACCCTAAT
1 AAACCC-TAGTAAACCCTAAT
* *
15813 AACCCCTAGTAAACCTTTATAATCCT
1 AAACCCTAGTAAACC---CTAA---T
* * *
15839 AAACCCTAATAAATCCTAGT
1 AAACCCTAGTAAACCCTAAT
** *
15859 AAACCCTAGTAAATACTTAT
1 AAACCCTAGTAAACCCTAAT
* *
15879 AAACCCTTGTAAACCCTAGT
1 AAACCCTAGTAAACCCTAAT
* *
15899 AAATCCTAGTAAACCCTTAT
1 AAACCCTAGTAAACCCTAAT
* **
15919 AAACCCTAGCAAA-CCTTGT
1 AAACCCTAGTAAACCCTAAT
*
15938 AAACCCTAGTAAACCCTAAC
1 AAACCCTAGTAAACCCTAAT
* *
15958 AAACCCTAGTAACCCCTTAT
1 AAACCCTAGTAAACCCTAAT
**
15978 AAACCCTTTTAAA-CCTAACT
1 AAACCCTAGTAAACCCTAA-T
** *
15998 AAACCCTTTTAAACCCTTAT
1 AAACCCTAGTAAACCCTAAT
* * *
16018 AAA-CCTAGCAAATCCTAAC
1 AAACCCTAGTAAACCCTAAT
** **
16037 AAACCCTAACAAACCCTACC
1 AAACCCTAGTAAACCCTAAT
* *
16057 AAACCCTAATAAACCCTTAT
1 AAACCCTAGTAAACCCTAAT
* *
16077 AAA-CCTCAATAAACCCTTAT
1 AAACCCT-AGTAAACCCTAAT
* *
16097 AAACACTTA-TAAACCCTAGT
1 AAAC-CCTAGTAAACCCTAAT
* *
16117 AAACCCTAGTAAACCTTATT
1 AAACCCTAGTAAACCCTAAT
*
16137 AAACCCTAGTAAACCCTTAT
1 AAACCCTAGTAAACCCTAAT
* * *
16157 AAACTCTTA-TAAAACATAAT
1 AAAC-CCTAGTAAACCCTAAT
* *
16177 AAACCCTAGCAAA-CCAAAGT
1 AAACCCTAGTAAACCCTAA-T
* *
16197 AAACCATA-AAAACCC-ATAT
1 AAACCCTAGTAAACCCTA-AT
*
16216 AAACCCTTA-TAATCCCTAAT
1 AAACCC-TAGTAAACCCTAAT
* * *
16236 AAACCCTAATAAATCCTAGT
1 AAACCCTAGTAAACCCTAAT
* * **
16256 AAACCCTA-T-TATCCTAGC
1 AAACCCTAGTAAACCCTAAT
* **
16274 AAACCCTAAT-AACCCTAGC
1 AAACCCTAGTAAACCCTAAT
*
16293 AAACCCTAGCAAACCC-AATT
1 AAACCCTAGTAAACCCTAA-T
*
16313 AAACCCCTA-TAAACCCTTAT
1 AAA-CCCTAGTAAACCCTAAT
* **
16333 AAACCCTAGGAAACCCTAGC
1 AAACCCTAGTAAACCCTAAT
**
16353 AAACCCTTA-TAGCCCCTAA-
1 AAACCC-TAGTAAACCCTAAT
16372 AAACCCTAGTAAACCCTTAA-
1 AAACCCTAGTAAACCC-TAAT
* *
16392 AAACCCTAGAAAACCCTAAC
1 AAACCCTAGTAAACCCTAAT
* *
16412 AAACCCTAAG-AAACCCAAAA
1 AAACCCT-AGTAAACCCTAAT
* ** *
16432 AAACCTTAACAAACCCTAAC
1 AAACCCTAGTAAACCCTAAT
16452 AAACCCTA-TGAAACCCTAAT
1 AAACCCTAGT-AAACCCTAAT
* *
16472 AAACCCTAGGAAACCCTAGT
1 AAACCCTAGTAAACCCTAAT
*
16492 AAACCCTTA-TAAACCCTAGT
1 AAACCC-TAGTAAACCCTAAT
* * *
16512 AAACCATAATAAACCCTAGT
1 AAACCCTAGTAAACCCTAAT
*** ** *
16532 AAATTTTAGTAAAAACTAGT
1 AAACCCTAGTAAACCCTAAT
* *
16552 AAGCCCTA-AAAACCCTAAT
1 AAACCCTAGTAAACCCTAAT
*
16571 AAACCCTTA-TAAACCCTAGT
1 AAACCC-TAGTAAACCCTAAT
*
16591 AAACCCTTA-TAAACCCT-AG
1 AAACCC-TAGTAAACCCTAAT
**
16610 AAACCCTAGTAAACCCTTGT
1 AAACCCTAGTAAACCCTAAT
** * *
16630 AAATACTTGTAAACCCTAGT
1 AAACCCTAGTAAACCCTAAT
* * *
16650 AAACCCTTA-TAAATCCTTAC
1 AAACCC-TAGTAAACCCTAAT
* *
16670 AAACCCTAATAAACCCTAGT
1 AAACCCTAGTAAACCCTAAT
* *
16690 AAACCCTAGCAAACCTTAAT
1 AAACCCTAGTAAACCCTAAT
**
16710 AAACCCTAGTAAACCCTAGC
1 AAACCCTAGTAAACCCTAAT
* *
16730 AAACCCTAATAAACCCTTAT
1 AAACCCTAGTAAACCCTAAT
*
16750 -AACCCTTTA-TAAACCCTAGT
1 AAACCC--TAGTAAACCCTAAT
*
16770 AAACCCATA-TAAACCCTAAC
1 AAACCC-TAGTAAACCCTAAT
* *
16790 AAACCTTAGTAAACCCTAAC
1 AAACCCTAGTAAACCCTAAT
*
16810 AAACCCTAGTAAATCCTAAT
1 AAACCCTAGTAAACCCTAAT
*
16830 AAACCCTAGGAAACCCTAAACCTT
1 AAACCCTAGTAAACCCT-AA---T
* *
16854 AAACCCTAGCAAACCTTAAT
1 AAACCCTAGTAAACCCTAAT
*
16874 AAACCCTAGTAAACTCTAAT
1 AAACCCTAGTAAACCCTAAT
* * **
16894 AAACCCTAATAAAACCTTTT
1 AAACCCTAGTAAACCCTAAT
* **
16914 AAACCTTTA-TAAACCCTAGC
1 AAACC-CTAGTAAACCCTAAT
* *
16934 AAACTCTTA-TAAACCCTTAT
1 AAAC-CCTAGTAAACCCTAAT
* *
16954 AAACCCTAGCAAACCCTTAT
1 AAACCCTAGTAAACCCTAAT
* **
16974 AAACCCTAGCAAACCCTAGC
1 AAACCCTAGTAAACCCTAAT
* *
16994 AAACCCTAGCAAACCCTAAG
1 AAACCCTAGTAAACCCTAAT
*
17014 AAACCCTAGAAAACCCTAGA-
1 AAACCCTAGTAAACCCTA-AT
17034 AAACCCTAGTAAACCCTAAT
1 AAACCCTAGTAAACCCTAAT
*
17054 AAACCCTTGTAAACCCTAAT
1 AAACCCTAGTAAACCCTAAT
* * *** *
17074 AAATCTTAGTAAATTTTAGT
1 AAACCCTAGTAAACCCTAAT
** *
17094 AAAAACTAGTAAACCCTTAT
1 AAACCCTAGTAAACCCTAAT
* *
17114 AAACCTTAGTAAACCCTTAT
1 AAACCCTAGTAAACCCTAAT
* *
17134 AAACCTTAATAAA-CCT-AT
1 AAACCCTAGTAAACCCTAAT
* *
17152 AAAACCCTACTAAACCCTTAT
1 -AAACCCTAGTAAACCCTAAT
** *
17173 AAATGCTTGT-AACCCTAAT
1 AAACCCTAGTAAACCCTAAT
*
17192 AAACCCTAGTAAAACC-AAGT
1 AAACCCTAGTAAACCCTAA-T
*
17212 AAACCCTTGTAAACCCTTGCAAACCCTT
1 AAACCCTAGTAAACCC-T---AA----T
* *
17240 ACAAATCCTAGCAAACCCTAGA-
1 --AAACCCTAGTAAACCCTA-AT
* ** *
17262 AAACTCTAAAAAAACCCTTAT
1 AAACCCT-AGTAAACCCTAAT
*
17283 AAACCCTAGTAAACCCTTAT
1 AAACCCTAGTAAACCCTAAT
* *
17303 AAACCTTAGTAAACCCTTAT
1 AAACCCTAGTAAACCCTAAT
* *
17323 AAATACTTA-TAAACCCTAAT
1 AAA-CCCTAGTAAACCCTAAT
* *
17343 AAACCCTAGTAACCCCTAGT
1 AAACCCTAGTAAACCCTAAT
* *
17363 AAACCCTTA-TAAACCATAGT
1 AAACCC-TAGTAAACCCTAAT
*
17383 AAA-CCTGAGTAAACCCTTAT
1 AAACCCT-AGTAAACCCTAAT
** * **
17403 AAAATCTAGTTAACCCTAGC
1 AAACCCTAGTAAACCCTAAT
* * *
17423 AAACCCTTGTAAACCTTAAC
1 AAACCCTAGTAAACCCTAAT
* *
17443 AAACCCTAGTAAAACCTAAC
1 AAACCCTAGTAAACCCTAAT
* *
17463 AAACCATTA-CAAACCCTAGA-
1 AAACC-CTAGTAAACCCTA-AT
* *
17483 AAACCCTTA-TAAACCTTTAT
1 AAACCC-TAGTAAACCCTAAT
*
17503 AAACCCTAGTAAACCCTTAT
1 AAACCCTAGTAAACCCTAAT
* *
17523 AAACTCTTA-TAAACCCTTAT
1 AAAC-CCTAGTAAACCCTAAT
* **
17543 AAACCTTAGTAAACCCTTGT
1 AAACCCTAGTAAACCCTAAT
* * *
17563 AAACCCTATTAAATCCTAGT
1 AAACCCTAGTAAACCCTAAT
* **
17583 AAACCCTAGCAAACCCTAGC
1 AAACCCTAGTAAACCCTAAT
* *
17603 AAACCCTAGTAAATCCTAGT
1 AAACCCTAGTAAACCCTAAT
* *
17623 AAACCCTAGCAAATCCTAGA-
1 AAACCCTAGTAAACCCTA-AT
* *
17643 AAACCCTAATAAACCCTAGT
1 AAACCCTAGTAAACCCTAAT
* * *
17663 AAATCATAGTAAACCATAAT
1 AAACCCTAGTAAACCCTAAT
* * *
17683 AAACCCTAGTCAACACTTAT
1 AAACCCTAGTAAACCCTAAT
* * **
17703 AAAGCCTTA-TAAATCCTAGC
1 AAA-CCCTAGTAAACCCTAAT
* ** * **
17723 AAACACTAACAAACCTTAGC
1 AAACCCTAGTAAACCCTAAT
** *
17743 AAACTATTA-TAAACCCTAAC
1 AAAC-CCTAGTAAACCCTAAT
* * * *
17763 AAACCCTAGCAAATCTTAGT
1 AAACCCTAGTAAACCCTAAT
** **
17783 AAACCCTAACAAACCCTAGG
1 AAACCCTAGTAAACCCTAAT
* * *
17803 AAACCCAAAG-AAACCCTTAC
1 AAACCC-TAGTAAACCCTAAT
* *
17823 AAACCCTAGCAAATCCTAAT
1 AAACCCTAGTAAACCCTAAT
* * *
17843 AAACCCTATTAAATCCTAAA
1 AAACCCTAGTAAACCCTAAT
*
17863 AAACCCTAGTAAATCCTAAT
1 AAACCCTAGTAAACCCTAAT
* *
17883 AAACCCTAGTAAATCCTAGT
1 AAACCCTAGTAAACCCTAAT
* * *
17903 AAACCCCAGCAAATCCTAGA-
1 AAACCCTAGTAAACCCTA-AT
* * *
17923 AAACCCCACTAAACCCTAGT
1 AAACCCTAGTAAACCCTAAT
* * **
17943 AAACACTAGTAAATCCTTGT
1 AAACCCTAGTAAACCCTAAT
*
17963 AAACCCTATTAAACCCTAAT
1 AAACCCTAGTAAACCCTAAT
*
17983 AAACCCTAGTAAACCCTTAT
1 AAACCCTAGTAAACCCTAAT
* **
18003 GAACCCTAGTAGTCCCTTAA-
1 AAACCCTAGTAAACCC-TAAT
* *
18023 AAACCCTTA-TAAACTCTAGT
1 AAACCC-TAGTAAACCCTAAT
** *
18043 AAACCCTTTTAAACCTTAAT
1 AAACCCTAGTAAACCCTAAT
**
18063 AAACCCTAGTAAACCCTTCT
1 AAACCCTAGTAAACCCTAAT
*
18083 AAACCCTA-TTAACCCTAAT
1 AAACCCTAGTAAACCCTAAT
* *
18102 AAACCCTTA-TAAA-ACTACT
1 AAACCC-TAGTAAACCCTAAT
* *
18121 AAACCCTAGTGAACCCTTAT
1 AAACCCTAGTAAACCCTAAT
* *
18141 AAATCCTTGTAAA-CC---T
1 AAACCCTAGTAAACCCTAAT
* *
18157 ------TGGTAAATCCTAAT
1 AAACCCTAGTAAACCCTAAT
* *
18171 AAACCCTA-TCAAATCCTAAA
1 AAACCCTAGT-AAACCCTAAT
* *
18191 AAATCCTAGTAAATCCTAAT
1 AAACCCTAGTAAACCCTAAT
*
18211 AAACCCTAGTAAATCCTAAT
1 AAACCCTAGTAAACCCTAAT
* * *
18231 AAACCCCAGCAAATCCTAGA-
1 AAACCCTAGTAAACCCTA-AT
* * *
18251 AAACCCCACTAAACCCTAGT
1 AAACCCTAGTAAACCCTAAT
* * **
18271 AAACACTAGTAAATCCTTGT
1 AAACCCTAGTAAACCCTAAT
*
18291 AAACCCTATTAAACCCTAAT
1 AAACCCTAGTAAACCCTAAT
* *
18311 AAACCTTAGTAAACCCTTAT
1 AAACCCTAGTAAACCCTAAT
* **
18331 GAACCCTAGTAGTCCCTTAA-
1 AAACCCTAGTAAACCC-TAAT
*
18351 AAACCCTTA-TAAACCCTAGT
1 AAACCC-TAGTAAACCCTAAT
** *
18371 AAACCCTTTTAAACCTTAAT
1 AAACCCTAGTAAACCCTAAT
**
18391 AAACCCTAGTAAACCCTTCT
1 AAACCCTAGTAAACCCTAAT
*
18411 AAACCCTA-TTAACCCTAAT
1 AAACCCTAGTAAACCCTAAT
*
18430 AAACCCTTA-TAAA-ACTAAT
1 AAACCC-TAGTAAACCCTAAT
* *
18449 AAACCCTAGTGAACCCTTAT
1 AAACCCTAGTAAACCCTAAT
* * *
18469 AAATCCTTA-TAAACCTTAGT
1 AAA-CCCTAGTAAACCCTAAT
* * * *
18489 AAATCTTAGTAAACCTTAGT
1 AAACCCTAGTAAACCCTAAT
* *
18509 AAACCCTAATAATCCCT-AT
1 AAACCCTAGTAAACCCTAAT
* * **
18528 -AACCCAAGTAATCTTTAAT
1 AAACCCTAGTAAACCCTAAT
* **
18547 AAATCCTAGTAAACCCTTGT
1 AAACCCTAGTAAACCCTAAT
* * *
18567 ATACCCTTA-TAAATCCTAGT
1 AAACCC-TAGTAAACCCTAAT
*
18587 AAACCCTTA-TAAACCCTAGT
1 AAACCC-TAGTAAACCCTAAT
* * * *
18607 ACACCCTAATATACCCTAGT
1 AAACCCTAGTAAACCCTAAT
* *
18627 AAACCCTAATAAACCCTAGT
1 AAACCCTAGTAAACCCTAAT
* ** *
18647 TAACATTTA-TAAACCCTTAT
1 AAAC-CCTAGTAAACCCTAAT
*
18667 AAACCCTAATAAACCCTAAT
1 AAACCCTAGTAAACCCTAAT
* *
18687 ACACCTTAGTAAACCCT--T
1 AAACCCTAGTAAACCCTAAT
* *
18705 GAACACCCTAGTACACCCTAGT
1 -AA-ACCCTAGTAAACCCTAAT
**
18727 ACGCCCTAGTAAACCCTAAT
1 AAACCCTAGTAAACCCTAAT
* *
18747 AAACCCTATTAAATCCTAAT
1 AAACCCTAGTAAACCCTAAT
* * **
18767 AAACCCTTGTAGACCCTTGT
1 AAACCCTAGTAAACCCTAAT
***
18787 AAATATTAGTAAACCCTAAT
1 AAACCCTAGTAAACCCTAAT
* *
18807 AAACCCTAGTAAATCTTAAT
1 AAACCCTAGTAAACCCTAAT
*
18827 AAACCCTAGTAAACCCTTAT
1 AAACCCTAGTAAACCCTAAT
*** *
18847 AAACCCTAGTAAATTATTAT
1 AAACCCTAGTAAACCCTAAT
* * * *
18867 AAACCCTAATAAATCATAGT
1 AAACCCTAGTAAACCCTAAT
*
18887 AAA-CCTGAGTAAACCCTTAT
1 AAACCCT-AGTAAACCCTAAT
*
18907 AAATCCTAGTAAACCCTAAT
1 AAACCCTAGTAAACCCTAAT
*
18927 AAACTCTAGTAAACCCTAAT
1 AAACCCTAGTAAACCCTAAT
* * * * *
18947 ATACCCTATTACACTCTAGT
1 AAACCCTAGTAAACCCTAAT
* * *
18967 AAAGCCTAGTAAACCATAGT
1 AAACCCTAGTAAACCCTAAT
* * *
18987 AAACCCTAATAAATCCTAGT
1 AAACCCTAGTAAACCCTAAT
19007 AAACCCTA
1 AAACCCTA
19015 ACCCCAAAAA
Statistics
Matches: 3142, Mismatches: 726, Indels: 338
0.75 0.17 0.08
Matches are distributed among these distances:
10 6 0.00
11 2 0.00
14 1 0.00
15 10 0.00
16 4 0.00
18 44 0.01
19 321 0.10
20 2554 0.81
21 129 0.04
22 16 0.01
23 7 0.00
24 16 0.01
25 2 0.00
26 14 0.00
27 1 0.00
28 1 0.00
29 1 0.00
30 13 0.00
ACGTcount: A:0.43, C:0.28, G:0.06, T:0.23
Consensus pattern (20 bp):
AAACCCTAGTAAACCCTAAT
Found at i:23577 original size:18 final size:17
Alignment explanation
Indices: 23545--23578 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
23535 AGTTGAAGAG
*
23545 TAAAATAATATTAATAA
1 TAAAACAATATTAATAA
23562 TAAAACAATGATTAATA
1 TAAAACAAT-ATTAATA
23579 TGTGTGGGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.32
Consensus pattern (17 bp):
TAAAACAATATTAATAA
Found at i:23806 original size:21 final size:19
Alignment explanation
Indices: 23782--23962 Score: 146
Period size: 21 Copynumber: 8.8 Consensus size: 19
23772 CATATTCGCA
*
23782 TTGCGATAGTCCAAGTTCGCG
1 TTGCGATAGTCCAAATT--CG
**
23803 TTGCGATTTTCCAAATTCG
1 TTGCGATAGTCCAAATTCG
* *
23822 TTGCGATAGTTCAAGTTTGCG
1 TTGCGATAGTCCAA-ATT-CG
*
23843 TTGCGATTTATTCCAAATTCG
1 TTGCGA--TAGTCCAAATTCG
*
23864 TTGCGATAGTCCAAGTTCGCG
1 TTGCGATAGTCCAAATT--CG
* *
23885 TTGCGATTTATTACAAATTCG
1 TTGCGA--TAGTCCAAATTCG
*
23906 TTGCGATAGTCTCCAAGTTCG
1 TTGCGATAG--TCCAAATTCG
23927 TTGCGATAGTCTCCAAATTCG
1 TTGCGATAG--TCCAAATTCG
23948 TTGCGATAGTCCAAA
1 TTGCGATAGTCCAAA
23963 ATCGCAACGA
Statistics
Matches: 131, Mismatches: 19, Indels: 22
0.76 0.11 0.13
Matches are distributed among these distances:
19 30 0.23
20 2 0.02
21 83 0.63
22 2 0.02
23 14 0.11
ACGTcount: A:0.23, C:0.20, G:0.22, T:0.35
Consensus pattern (19 bp):
TTGCGATAGTCCAAATTCG
Found at i:23858 original size:42 final size:41
Alignment explanation
Indices: 23782--23961 Score: 251
Period size: 42 Copynumber: 4.3 Consensus size: 41
23772 CATATTCGCA
23782 TTGCGATAGTCCAAGTTCGCGTTGCGATT-TTCCAAATTCG
1 TTGCGATAGTCCAAGTTCGCGTTGCGATTATTCCAAATTCG
* *
23822 TTGCGATAGTTCAAGTTTGCGTTGCGATTTATTCCAAATTCG
1 TTGCGATAGTCCAAGTTCGCGTTGCGA-TTATTCCAAATTCG
*
23864 TTGCGATAGTCCAAGTTCGCGTTGCGATTTATTACAAATTCG
1 TTGCGATAGTCCAAGTTCGCGTTGCGA-TTATTCCAAATTCG
23906 TTGCGATAGTCTCCAAGTT--CGTTGCGA-TAGTCTCCAAATTCG
1 TTGCGATAG--TCCAAGTTCGCGTTGCGATTA-T-TCCAAATTCG
23948 TTGCGATAGTCCAA
1 TTGCGATAGTCCAA
23962 AATCGCAACG
Statistics
Matches: 128, Mismatches: 6, Indels: 12
0.88 0.04 0.08
Matches are distributed among these distances:
40 32 0.25
41 3 0.02
42 85 0.66
44 8 0.06
ACGTcount: A:0.22, C:0.21, G:0.22, T:0.36
Consensus pattern (41 bp):
TTGCGATAGTCCAAGTTCGCGTTGCGATTATTCCAAATTCG
Found at i:23950 original size:63 final size:62
Alignment explanation
Indices: 23782--23954 Score: 164
Period size: 63 Copynumber: 2.8 Consensus size: 62
23772 CATATTCGCA
* *
23782 TTGCGATAG-TCCAAGTTCGCGTTGCGAT-TTTCCAAATTCGTTGCGA-TAGTTCAAGTTTGCG
1 TTGCGATAGTTCCAAGTT--CGTTGCGATAGTTCCAAATTCGTTGCGATTAGTTCAAGATTGCG
* *
23843 TTGCGATTTA-TTCCAAATTCGTTGCGATAG-TCCAAGTTCGCGTTGCGATTTA-TTACAA-ATT
1 TTGCGA--TAGTTCCAAGTTCGTTGCGATAGTTCCAAATT--CGTTGCGA-TTAGTT-CAAGATT
23904 -CG
60 GCG
23906 TTGCGATAGTCTCCAAGTTCGTTGCGATAGTCTCCAAATTCGTTGCGAT
1 TTGCGATAGT-TCCAAGTTCGTTGCGATAGT-TCCAAATTCGTTGCGAT
23955 AGTCCAAAAT
Statistics
Matches: 93, Mismatches: 6, Indels: 25
0.75 0.05 0.20
Matches are distributed among these distances:
61 24 0.26
62 2 0.02
63 51 0.55
64 4 0.04
65 12 0.13
ACGTcount: A:0.21, C:0.20, G:0.22, T:0.36
Consensus pattern (62 bp):
TTGCGATAGTTCCAAGTTCGTTGCGATAGTTCCAAATTCGTTGCGATTAGTTCAAGATTGCG
Found at i:24510 original size:21 final size:21
Alignment explanation
Indices: 24480--24597 Score: 150
Period size: 21 Copynumber: 5.7 Consensus size: 21
24470 GATTCACCTG
*
24480 TCATCGTTCAAGAGGCCCCTC
1 TCATCATTCAAGAGGCCCCTC
*
24501 -CTATCATTCAAGAGACCCCTC
1 TC-ATCATTCAAGAGGCCCCTC
24522 TCATCATTCAAGAGGCCCCTC
1 TCATCATTCAAGAGGCCCCTC
*
24543 TCATCGTTCAAGAGGCCCCTC
1 TCATCATTCAAGAGGCCCCTC
**
24564 TCATTGTTCAAGAGGCCCCTC
1 TCATCATTCAAGAGGCCCCTC
* *
24585 -CACCGTTCAAGAG
1 TCATCATTCAAGAG
24598 CCCGATTCAC
Statistics
Matches: 88, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
20 12 0.14
21 75 0.85
22 1 0.01
ACGTcount: A:0.23, C:0.36, G:0.17, T:0.24
Consensus pattern (21 bp):
TCATCATTCAAGAGGCCCCTC
Found at i:24558 original size:63 final size:62
Alignment explanation
Indices: 24480--24597 Score: 166
Period size: 63 Copynumber: 1.9 Consensus size: 62
24470 GATTCACCTG
*
24480 TCATCGTTCAAGAGGCCCCTC-CTATCATTCAAGAGACCCCTCTCATCATTCAAGAGGCCCCTC
1 TCATCGTTCAAGAGGCCCCTCTC-ATCATTCAAGAGACCCCTC-CACCATTCAAGAGGCCCCTC
** * *
24543 TCATCGTTCAAGAGGCCCCTCTCATTGTTCAAGAGGCCCCTCCACCGTTCAAGAG
1 TCATCGTTCAAGAGGCCCCTCTCATCATTCAAGAGACCCCTCCACCATTCAAGAG
24598 CCCGATTCAC
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
62 11 0.22
63 37 0.76
64 1 0.02
ACGTcount: A:0.23, C:0.36, G:0.17, T:0.24
Consensus pattern (62 bp):
TCATCGTTCAAGAGGCCCCTCTCATCATTCAAGAGACCCCTCCACCATTCAAGAGGCCCCTC
Found at i:26049 original size:29 final size:29
Alignment explanation
Indices: 26007--26124 Score: 191
Period size: 29 Copynumber: 4.1 Consensus size: 29
25997 CTTTCGCAAC
*
26007 GCGAAAGTCAAATTCGTGTTGTGATTGTT
1 GCGAAAGTCAAATTCGTGTTGCGATTGTT
26036 GCGAAAGTCAAATTCGTGTTGCGATTGTT
1 GCGAAAGTCAAATTCGTGTTGCGATTGTT
* *
26065 GTGAAAGTCAAATTCGTGTTGCGATTATT
1 GCGAAAGTCAAATTCGTGTTGCGATTGTT
* *
26094 GCAAAAGTCAAATTCGTGTTGCGATTTTT
1 GCGAAAGTCAAATTCGTGTTGCGATTGTT
26123 GC
1 GC
26125 CTTGCGAATT
Statistics
Matches: 83, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 83 1.00
ACGTcount: A:0.25, C:0.13, G:0.25, T:0.36
Consensus pattern (29 bp):
GCGAAAGTCAAATTCGTGTTGCGATTGTT
Found at i:26144 original size:20 final size:20
Alignment explanation
Indices: 26119--26161 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
26109 GTGTTGCGAT
*
26119 TTTTGCCTTGCGAATTTGAC
1 TTTTGCCTTGCAAATTTGAC
* *
26139 TTTTGCGTTGCAAATTTGTC
1 TTTTGCCTTGCAAATTTGAC
26159 TTT
1 TTT
26162 CACAACAATC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.14, C:0.16, G:0.19, T:0.51
Consensus pattern (20 bp):
TTTTGCCTTGCAAATTTGAC
Found at i:26601 original size:7 final size:7
Alignment explanation
Indices: 26589--26652 Score: 128
Period size: 7 Copynumber: 9.1 Consensus size: 7
26579 TCTTCTCTTC
26589 ACCCTAA
1 ACCCTAA
26596 ACCCTAA
1 ACCCTAA
26603 ACCCTAA
1 ACCCTAA
26610 ACCCTAA
1 ACCCTAA
26617 ACCCTAA
1 ACCCTAA
26624 ACCCTAA
1 ACCCTAA
26631 ACCCTAA
1 ACCCTAA
26638 ACCCTAA
1 ACCCTAA
26645 ACCCTAA
1 ACCCTAA
26652 A
1 A
26653 ACCCGGCCCC
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 57 1.00
ACGTcount: A:0.44, C:0.42, G:0.00, T:0.14
Consensus pattern (7 bp):
ACCCTAA
Found at i:26664 original size:7 final size:7
Alignment explanation
Indices: 26654--26881 Score: 297
Period size: 7 Copynumber: 33.4 Consensus size: 7
26644 AACCCTAAAA
26654 CCCGGCC
1 CCCGGCC
26661 CCCGG-C
1 CCCGGCC
26667 CCCGGCC
1 CCCGGCC
26674 CCCGGCC
1 CCCGGCC
26681 CCCGGCC
1 CCCGGCC
26688 CCCGGCC
1 CCCGGCC
26695 CCCGGCC
1 CCCGGCC
*
26702 CCCGGAC
1 CCCGGCC
*
26709 CCCGGAC
1 CCCGGCC
*
26716 CCCGGAC
1 CCCGGCC
*
26723 CCCGGAC
1 CCCGGCC
*
26730 CCCGGAC
1 CCCGGCC
*
26737 CCCGGAC
1 CCCGGCC
*
26744 CCCGGAC
1 CCCGGCC
*
26751 CCCGGAC
1 CCCGGCC
*
26758 CCCGGAC
1 CCCGGCC
26765 CCCGGCC
1 CCCGGCC
26772 CCCGG-C
1 CCCGGCC
26778 CCCGG-C
1 CCCGGCC
*
26784 CCCGGAC
1 CCCGGCC
*
26791 CCCGGAC
1 CCCGGCC
*
26798 CCCGGAC
1 CCCGGCC
*
26805 CCCGGAC
1 CCCGGCC
26812 CCCGG-C
1 CCCGGCC
26818 CCCGGCC
1 CCCGGCC
26825 CCCGGCC
1 CCCGGCC
26832 CCCGG-C
1 CCCGGCC
26838 CCCGGCC
1 CCCGGCC
26845 CCCGGCC
1 CCCGGCC
26852 CCCGGCC
1 CCCGGCC
26859 CCCGGCC
1 CCCGGCC
26866 CCCGGCC
1 CCCGGCC
26873 CCC-GCC
1 CCCGGCC
26879 CCC
1 CCC
26882 TAAACCCTAA
Statistics
Matches: 215, Mismatches: 2, Indels: 9
0.95 0.01 0.04
Matches are distributed among these distances:
6 36 0.17
7 179 0.83
ACGTcount: A:0.06, C:0.66, G:0.29, T:0.00
Consensus pattern (7 bp):
CCCGGCC
Found at i:26944 original size:7 final size:7
Alignment explanation
Indices: 26934--27335 Score: 617
Period size: 7 Copynumber: 57.6 Consensus size: 7
26924 TAAACCCTAA
26934 ACCCTGG
1 ACCCTGG
26941 ACCCTGG
1 ACCCTGG
26948 ACCCTGG
1 ACCCTGG
26955 ACCCTGG
1 ACCCTGG
26962 ACCCTGG
1 ACCCTGG
26969 ACCCTGG
1 ACCCTGG
26976 ACCCTGG
1 ACCCTGG
26983 ACCCTGG
1 ACCCTGG
26990 ACCCTGG
1 ACCCTGG
26997 ACCCTGG
1 ACCCTGG
27004 ACCCTGG
1 ACCCTGG
27011 ACCCTGG
1 ACCCTGG
27018 ACCCTGG
1 ACCCTGG
27025 ACCCTGG
1 ACCCTGG
27032 ACCCTGG
1 ACCCTGG
27039 ACCCTGG
1 ACCCTGG
27046 ACCCTGG
1 ACCCTGG
27053 ACCCTGG
1 ACCCTGG
27060 ACCCTGG
1 ACCCTGG
27067 ACCCTGG
1 ACCCTGG
27074 ACCCTGG
1 ACCCTGG
27081 ACCCTGG
1 ACCCTGG
*
27088 ACCGTGG
1 ACCCTGG
27095 ACCCTGG
1 ACCCTGG
*
27102 ACCGTGG
1 ACCCTGG
*
27109 ACCGTGG
1 ACCCTGG
*
27116 ACCGTGG
1 ACCCTGG
*
27123 ACCGTGG
1 ACCCTGG
*
27130 ACCGTGG
1 ACCCTGG
*
27137 ACCGTGG
1 ACCCTGG
*
27144 ACCGTGG
1 ACCCTGG
*
27151 ACCCTTG
1 ACCCTGG
*
27158 ACCGTGG
1 ACCCTGG
*
27165 ACCGTGG
1 ACCCTGG
*
27172 ACCGTGG
1 ACCCTGG
*
27179 ACCGTGG
1 ACCCTGG
*
27186 ACCGTGG
1 ACCCTGG
*
27193 ACCGTGG
1 ACCCTGG
27200 ACCCTGG
1 ACCCTGG
27207 ACCCTGG
1 ACCCTGG
27214 ACCCTGG
1 ACCCTGG
27221 ACCCTGG
1 ACCCTGG
27228 ACCCTGG
1 ACCCTGG
27235 ACCCTGG
1 ACCCTGG
27242 ACCCTGG
1 ACCCTGG
27249 ACCCTGG
1 ACCCTGG
27256 ACCCTGG
1 ACCCTGG
27263 ACCCTGG
1 ACCCTGG
27270 ACCCTGG
1 ACCCTGG
27277 ACCCTGG
1 ACCCTGG
27284 ACCCTGG
1 ACCCTGG
*
27291 ACCCTGA
1 ACCCTGG
*
27298 ACCCTGA
1 ACCCTGG
*
27305 ACCCTGA
1 ACCCTGG
*
27312 ACCCTGA
1 ACCCTGG
*
27319 ACCCTGA
1 ACCCTGG
27326 ACCCT-G
1 ACCCTGG
27332 ACCC
1 ACCC
27336 CTGACCCCTG
Statistics
Matches: 385, Mismatches: 10, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
6 4 0.01
7 381 0.99
ACGTcount: A:0.16, C:0.40, G:0.30, T:0.14
Consensus pattern (7 bp):
ACCCTGG
Found at i:27337 original size:7 final size:7
Alignment explanation
Indices: 26879--27413 Score: 298
Period size: 7 Copynumber: 76.4 Consensus size: 7
26869 GGCCCCCGCC
*
26879 CCCTAAA
1 CCCTGAA
*
26886 CCCTAAA
1 CCCTGAA
*
26893 CCCTAAA
1 CCCTGAA
*
26900 CCCTAAA
1 CCCTGAA
*
26907 CCCTAAA
1 CCCTGAA
*
26914 CCCTAAA
1 CCCTGAA
*
26921 CCCTAAA
1 CCCTGAA
*
26928 CCCTAAA
1 CCCTGAA
*
26935 CCCTGGA
1 CCCTGAA
*
26942 CCCTGGA
1 CCCTGAA
*
26949 CCCTGGA
1 CCCTGAA
*
26956 CCCTGGA
1 CCCTGAA
*
26963 CCCTGGA
1 CCCTGAA
*
26970 CCCTGGA
1 CCCTGAA
*
26977 CCCTGGA
1 CCCTGAA
*
26984 CCCTGGA
1 CCCTGAA
*
26991 CCCTGGA
1 CCCTGAA
*
26998 CCCTGGA
1 CCCTGAA
*
27005 CCCTGGA
1 CCCTGAA
*
27012 CCCTGGA
1 CCCTGAA
*
27019 CCCTGGA
1 CCCTGAA
*
27026 CCCTGGA
1 CCCTGAA
*
27033 CCCTGGA
1 CCCTGAA
*
27040 CCCTGGA
1 CCCTGAA
*
27047 CCCTGGA
1 CCCTGAA
*
27054 CCCTGGA
1 CCCTGAA
*
27061 CCCTGGA
1 CCCTGAA
*
27068 CCCTGGA
1 CCCTGAA
*
27075 CCCTGGA
1 CCCTGAA
*
27082 CCCTGGA
1 CCCTGAA
* *
27089 CCGTGGA
1 CCCTGAA
*
27096 CCCTGGA
1 CCCTGAA
* *
27103 CCGTGGA
1 CCCTGAA
* *
27110 CCGTGGA
1 CCCTGAA
* *
27117 CCGTGGA
1 CCCTGAA
* *
27124 CCGTGGA
1 CCCTGAA
* *
27131 CCGTGGA
1 CCCTGAA
* *
27138 CCGTGGA
1 CCCTGAA
* *
27145 CCGTGGA
1 CCCTGAA
27152 CCCTTG-A
1 CCC-TGAA
* *
27159 CCGTGGA
1 CCCTGAA
* *
27166 CCGTGGA
1 CCCTGAA
* *
27173 CCGTGGA
1 CCCTGAA
* *
27180 CCGTGGA
1 CCCTGAA
* *
27187 CCGTGGA
1 CCCTGAA
* *
27194 CCGTGGA
1 CCCTGAA
*
27201 CCCTGGA
1 CCCTGAA
*
27208 CCCTGGA
1 CCCTGAA
*
27215 CCCTGGA
1 CCCTGAA
*
27222 CCCTGGA
1 CCCTGAA
*
27229 CCCTGGA
1 CCCTGAA
*
27236 CCCTGGA
1 CCCTGAA
*
27243 CCCTGGA
1 CCCTGAA
*
27250 CCCTGGA
1 CCCTGAA
*
27257 CCCTGGA
1 CCCTGAA
*
27264 CCCTGGA
1 CCCTGAA
*
27271 CCCTGGA
1 CCCTGAA
*
27278 CCCTGGA
1 CCCTGAA
*
27285 CCCTGGA
1 CCCTGAA
27292 CCCTGAA
1 CCCTGAA
27299 CCCTGAA
1 CCCTGAA
27306 CCCTGAA
1 CCCTGAA
27313 CCCTGAA
1 CCCTGAA
27320 CCCTGAA
1 CCCTGAA
*
27327 CCCTGAC
1 CCCTGAA
*
27334 CCCTGAC
1 CCCTGAA
*
27341 CCCTGAC
1 CCCTGAA
*
27348 CCCTGAC
1 CCCTGAA
*
27355 CCCTAAA
1 CCCTGAA
*
27362 CCCTAAA
1 CCCTGAA
*
27369 CCCTAAA
1 CCCTGAA
*
27376 CCCTAAA
1 CCCTGAA
*
27383 CCCTAAA
1 CCCTGAA
*
27390 CCCTAAA
1 CCCTGAA
*
27397 CCCCGAA
1 CCCTGAA
*
27404 CCCCGAA
1 CCCTGAA
27411 CCC
1 CCC
27414 CGGACCCCGG
Statistics
Matches: 512, Mismatches: 14, Indels: 4
0.97 0.03 0.01
Matches are distributed among these distances:
6 2 0.00
7 508 0.99
8 2 0.00
ACGTcount: A:0.21, C:0.42, G:0.24, T:0.14
Consensus pattern (7 bp):
CCCTGAA
Found at i:27337 original size:14 final size:14
Alignment explanation
Indices: 26885--27434 Score: 440
Period size: 14 Copynumber: 39.3 Consensus size: 14
26875 CGCCCCCTAA
* **
26885 ACCCTAAACCCTAA
1 ACCCTGAACCCTGG
* **
26899 ACCCTAAACCCTAA
1 ACCCTGAACCCTGG
* **
26913 ACCCTAAACCCTAA
1 ACCCTGAACCCTGG
*
26927 ACCCTAAACCCTGG
1 ACCCTGAACCCTGG
*
26941 ACCCTGGACCCTGG
1 ACCCTGAACCCTGG
*
26955 ACCCTGGACCCTGG
1 ACCCTGAACCCTGG
*
26969 ACCCTGGACCCTGG
1 ACCCTGAACCCTGG
*
26983 ACCCTGGACCCTGG
1 ACCCTGAACCCTGG
*
26997 ACCCTGGACCCTGG
1 ACCCTGAACCCTGG
*
27011 ACCCTGGACCCTGG
1 ACCCTGAACCCTGG
*
27025 ACCCTGGACCCTGG
1 ACCCTGAACCCTGG
*
27039 ACCCTGGACCCTGG
1 ACCCTGAACCCTGG
*
27053 ACCCTGGACCCTGG
1 ACCCTGAACCCTGG
*
27067 ACCCTGGACCCTGG
1 ACCCTGAACCCTGG
* *
27081 ACCCTGGACCGTGG
1 ACCCTGAACCCTGG
* *
27095 ACCCTGGACCGTGG
1 ACCCTGAACCCTGG
* * *
27109 ACCGTGGACCGTGG
1 ACCCTGAACCCTGG
* * *
27123 ACCGTGGACCGTGG
1 ACCCTGAACCCTGG
* * *
27137 ACCGTGGACCGTGG
1 ACCCTGAACCCTGG
*
27151 ACCCTTG-ACCGTGG
1 ACCC-TGAACCCTGG
* * *
27165 ACCGTGGACCGTGG
1 ACCCTGAACCCTGG
* * *
27179 ACCGTGGACCGTGG
1 ACCCTGAACCCTGG
* *
27193 ACCGTGGACCCTGG
1 ACCCTGAACCCTGG
*
27207 ACCCTGGACCCTGG
1 ACCCTGAACCCTGG
*
27221 ACCCTGGACCCTGG
1 ACCCTGAACCCTGG
*
27235 ACCCTGGACCCTGG
1 ACCCTGAACCCTGG
*
27249 ACCCTGGACCCTGG
1 ACCCTGAACCCTGG
*
27263 ACCCTGGACCCTGG
1 ACCCTGAACCCTGG
*
27277 ACCCTGGACCCTGG
1 ACCCTGAACCCTGG
*
27291 ACCCTGAACCCTGA
1 ACCCTGAACCCTGG
*
27305 ACCCTGAACCCTGA
1 ACCCTGAACCCTGG
27319 ACCCTGAACCCT-G
1 ACCCTGAACCCTGG
*
27332 ACCCCTGACCCCT-G
1 A-CCCTGAACCCTGG
* **
27346 ACCCCTGACCCCTAA
1 A-CCCTGAACCCTGG
* **
27361 ACCCTAAACCCTAA
1 ACCCTGAACCCTGG
* **
27375 ACCCTAAACCCTAA
1 ACCCTGAACCCTGG
* * *
27389 ACCCTAAACCCCGA
1 ACCCTGAACCCTGG
* *
27403 ACCCCGAACCCCGG
1 ACCCTGAACCCTGG
* * *
27417 ACCCCGGACCCCGG
1 ACCCTGAACCCTGG
27431 ACCC
1 ACCC
27435 GGACCCCAAC
Statistics
Matches: 509, Mismatches: 23, Indels: 8
0.94 0.04 0.01
Matches are distributed among these distances:
13 3 0.01
14 503 0.99
15 3 0.01
ACGTcount: A:0.20, C:0.42, G:0.24, T:0.13
Consensus pattern (14 bp):
ACCCTGAACCCTGG
Found at i:27437 original size:6 final size:7
Alignment explanation
Indices: 27396--27441 Score: 67
Period size: 7 Copynumber: 6.7 Consensus size: 7
27386 TAAACCCTAA
*
27396 ACCCCGA
1 ACCCCGG
*
27403 ACCCCGA
1 ACCCCGG
27410 ACCCCGG
1 ACCCCGG
27417 ACCCCGG
1 ACCCCGG
27424 ACCCCGG
1 ACCCCGG
27431 A-CCCGG
1 ACCCCGG
27437 ACCCC
1 ACCCC
27442 AACATTAATG
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
6 6 0.16
7 31 0.84
ACGTcount: A:0.20, C:0.59, G:0.22, T:0.00
Consensus pattern (7 bp):
ACCCCGG
Found at i:32446 original size:10 final size:10
Alignment explanation
Indices: 32418--36474 Score: 1885
Period size: 10 Copynumber: 407.9 Consensus size: 10
32408 AAACCTTTAC
**
32418 AAACCCTAGC
1 AAACCCTAAT
*
32428 AAATCCTAAT
1 AAACCCTAAT
32438 AAACCCTAAT
1 AAACCCTAAT
**
32448 AAACCCTCGT
1 AAACCCTAAT
32458 AAA-CC---T
1 AAACCCTAAT
*
32464 -AACCCTTAT
1 AAACCCTAAT
*
32473 AAACCCTAAG
1 AAACCCTAAT
**
32483 AAACCCTAGC
1 AAACCCTAAT
*
32493 AAACCCTAGT
1 AAACCCTAAT
* *
32503 AAACTCTTAT
1 AAACCCTAAT
*
32513 AAACCCTAAC
1 AAACCCTAAT
*
32523 AAACCCTAGT
1 AAACCCTAAT
32533 AAACCCTAGA-
1 AAACCCTA-AT
** *
32543 AAACTATAAC
1 AAACCCTAAT
32553 AAACCCTAAT
1 AAACCCTAAT
*
32563 AAACCCTAGT
1 AAACCCTAAT
*
32573 AAACCCTCAT
1 AAACCCTAAT
** *
32583 AAAAACTAGT
1 AAACCCTAAT
* *
32593 AAACCTTAGT
1 AAACCCTAAT
* *
32603 AAATCCTTAT
1 AAACCCTAAT
*
32613 AAACCCTAGT
1 AAACCCTAAT
* *
32623 AAACCTTTAT
1 AAACCCTAAT
*
32633 AAACCCAAAT
1 AAACCCTAAT
*
32643 AAACCCTCAT
1 AAACCCTAAT
**
32653 AAACCCTAGG
1 AAACCCTAAT
*
32663 AAACCCTAAA
1 AAACCCTAAT
* * **
32673 AAAACTTAGC
1 AAACCCTAAT
*
32683 AAACCCTTAT
1 AAACCCTAAT
*
32693 AAACCCTAGT
1 AAACCCTAAT
** *
32703 AATTCCTAGT
1 AAACCCTAAT
* * *
32713 AAATCATAGT
1 AAACCCTAAT
* *
32723 AAACTCTTAT
1 AAACCCTAAT
32733 AAACCCTAGA-
1 AAACCCTA-AT
**
32743 AAACCCTAGC
1 AAACCCTAAT
**
32753 AAACCCTAGG
1 AAACCCTAAT
32763 AAA-CCT-AT
1 AAACCCTAAT
*
32771 CAAATCCTAGA-
1 -AAACCCTA-AT
**
32782 AAACCCTAGG
1 AAACCCTAAT
* *
32792 AAATCCTACT
1 AAACCCTAAT
*
32802 AAACCCTAGAA
1 AAACCCTA-AT
32813 AAACCCTAGA-
1 AAACCCTA-AT
* *
32823 AAATCCTACT
1 AAACCCTAAT
* *
32833 AAACCCCAAAA
1 AAA-CCCTAAT
32844 AAACCCTAGA-
1 AAACCCTA-AT
32854 AAACCCTAAT
1 AAACCCTAAT
**
32864 AAACCCTTGT
1 AAACCCTAAT
**
32874 AAACCCTTGT
1 AAACCCTAAT
* **
32884 AAACCTTTGT
1 AAACCCTAAT
**
32894 AAACCCTCGT
1 AAACCCTAAT
* **
32904 AAAACCTAGG
1 AAACCCTAAT
* * **
32914 AAAACTTAGG
1 AAACCCTAAT
* **
32924 AAAACCTAGC
1 AAACCCTAAT
**
32934 AAACCCTTGT
1 AAACCCTAAT
* **
32944 AAATCCTAGC
1 AAACCCTAAT
*
32954 AAACCCTAGT
1 AAACCCTAAT
* *
32964 AAACCCTTAC
1 AAACCCTAAT
**
32974 AAACCCTAGC
1 AAACCCTAAT
32984 AAACCC-AAGT
1 AAACCCTAA-T
32994 AAACCCTAA-
1 AAACCCTAAT
* *
33003 GAACCTCTAAC
1 AAACC-CTAAT
**
33014 AAACCCTAGC
1 AAACCCTAAT
*
33024 AAACCCTAAG
1 AAACCCTAAT
**
33034 AAACCCTAGC
1 AAACCCTAAT
*
33044 AAACCCTAGT
1 AAACCCTAAT
* *
33054 AAACCATAAA
1 AAACCCTAAT
*
33064 AAACCCTAGT
1 AAACCCTAAT
*
33074 AAACTCTAAT
1 AAACCCTAAT
33084 AAACCCTAAT
1 AAACCCTAAT
*
33094 AAACCCTATT
1 AAACCCTAAT
33104 AAACTCCT-AT
1 AAAC-CCTAAT
*
33114 AACCCCTAA-
1 AAACCCTAAT
33123 AAACCCTAAT
1 AAACCCTAAT
**
33133 AAACCCTAGC
1 AAACCCTAAT
*
33143 AAACCCTAGT
1 AAACCCTAAT
** **
33153 AAACTTTAGG
1 AAACCCTAAT
** **
33163 AAAAACTAGC
1 AAACCCTAAT
* *
33173 AAATCCTAAG
1 AAACCCTAAT
**
33183 AAACCCTAGC
1 AAACCCTAAT
* *
33193 AAACTCTAGT
1 AAACCCTAAT
*
33203 AAACCCCT-TT
1 AAA-CCCTAAT
*
33213 AAACCCTTAT
1 AAACCCTAAT
*
33223 AAACCCTAGT
1 AAACCCTAAT
*
33233 AAACCCTTAT
1 AAACCCTAAT
*
33243 AAA-CCTTAT
1 AAACCCTAAT
* **
33252 AAACCTTAGC
1 AAACCCTAAT
*
33262 AAACCCTTAT
1 AAACCCTAAT
33272 AAACCCTAAT
1 AAACCCTAAT
* *
33282 AACCCCTAGT
1 AAACCCTAAT
* *
33292 AAACCTTTAT
1 AAACCCTAAT
*
33302 AAATCC---T
1 AAACCCTAAT
33309 AAACCCTAAT
1 AAACCCTAAT
* *
33319 AAATCCTAGT
1 AAACCCTAAT
*
33329 AAACCCTAGT
1 AAACCCTAAT
** *
33339 AAATACTTAT
1 AAACCCTAAT
**
33349 AAACCCTTGT
1 AAACCCTAAT
*
33359 AAACCCTAGT
1 AAACCCTAAT
* *
33369 AAATCCTAGT
1 AAACCCTAAT
*
33379 AAACCCTTAT
1 AAACCCTAAT
**
33389 AAACCCTAGC
1 AAACCCTAAT
**
33399 AAA-CCTTGT
1 AAACCCTAAT
*
33408 AAACCCTAGT
1 AAACCCTAAT
*
33418 AAACCCTAAC
1 AAACCCTAAT
*
33428 AAACCCTAGT
1 AAACCCTAAT
* *
33438 AACCCCTTAT
1 AAACCCTAAT
**
33448 AAACCCTTTT
1 AAACCCTAAT
33458 AAA-CCTAACT
1 AAACCCTAA-T
*
33468 AAACCCTTAT
1 AAACCCTAAT
**
33478 AAA-CCTAGC
1 AAACCCTAAT
* *
33487 AAATCCTAAC
1 AAACCCTAAT
*
33497 AAACCCTAAC
1 AAACCCTAAT
**
33507 AAACCCTACC
1 AAACCCTAAT
33517 AAACCCTAAT
1 AAACCCTAAT
*
33527 AAACCCTTAT
1 AAACCCTAAT
33537 AAA-CCTCAAT
1 AAACCCT-AAT
*
33547 AAACCCTTAT
1 AAACCCTAAT
* *
33557 AAACACTTAT
1 AAACCCTAAT
*
33567 AAACCCTAGT
1 AAACCCTAAT
*
33577 AAACCCTAGT
1 AAACCCTAAT
* *
33587 AAACCTTATT
1 AAACCCTAAT
*
33597 AAACCCTAGT
1 AAACCCTAAT
*
33607 AAACCCTTAT
1 AAACCCTAAT
* *
33617 AAACTCTTAT
1 AAACCCTAAT
* *
33627 AAAACATAAT
1 AAACCCTAAT
**
33637 AAACCCTAGC
1 AAACCCTAAT
*
33647 AAA-CCAAAGT
1 AAACCCTAA-T
*
33657 AAACCATAAT
1 AAACCCTAAT
33667 AAACCC-ATAT
1 AAACCCTA-AT
*
33677 AAACCCTTAT
1 AAACCCTAAT
*
33687 AATCCCTAAT
1 AAACCCTAAT
33697 AAACCCTAAT
1 AAACCCTAAT
* *
33707 AAATCCTAGT
1 AAACCCTAAT
33717 AAACCCT-AT
1 AAACCCTAAT
* * **
33726 -TATCCTAGC
1 AAACCCTAAT
33735 AAACCCTAAT
1 AAACCCTAAT
**
33745 -AACCCTAGC
1 AAACCCTAAT
**
33754 AAACCCTAGC
1 AAACCCTAAT
33764 AAACCC-AATT
1 AAACCCTAA-T
33774 AAACCCCT-AT
1 AAA-CCCTAAT
*
33784 AAACCCTTAT
1 AAACCCTAAT
**
33794 AAACCCTAGG
1 AAACCCTAAT
**
33804 AAACCCTAGC
1 AAACCCTAAT
*
33814 AAACCCTTAT
1 AAACCCTAAT
**
33824 AGCCCCTAA-
1 AAACCCTAAT
*
33833 AAACCCTAGT
1 AAACCCTAAT
33843 AAACCCTTAA-
1 AAACCC-TAAT
33853 AAACCCTAGA-
1 AAACCCTA-AT
*
33863 AAACCCTAAG
1 AAACCCTAAT
*
33873 AAACCCTAAG
1 AAACCCTAAT
* *
33883 AAACCCAAAA
1 AAACCCTAAT
* *
33893 AAACCTTAAC
1 AAACCCTAAT
*
33903 AAACCCTAAC
1 AAACCCTAAT
33913 AAACCCT-AT
1 AAACCCTAAT
33922 GAAACCCTAAT
1 -AAACCCTAAT
**
33933 AAACCCTAGG
1 AAACCCTAAT
*
33943 AAACCCTAGT
1 AAACCCTAAT
*
33953 AAACCCTTAT
1 AAACCCTAAT
*
33963 AAACCCTAGT
1 AAACCCTAAT
*
33973 AAACCATAAT
1 AAACCCTAAT
*
33983 AAACCCTAGT
1 AAACCCTAAT
*** *
33993 AAATTTTAGT
1 AAACCCTAAT
** *
34003 AAAAACTAGT
1 AAACCCTAAT
*
34013 AAGCCCTAA-
1 AAACCCTAAT
34022 AAACCCTAAT
1 AAACCCTAAT
*
34032 AAACCCTTAT
1 AAACCCTAAT
*
34042 AAACCCTAGT
1 AAACCCTAAT
*
34052 AAACCCTTAT
1 AAACCCTAAT
*
34062 AAACCCT-AG
1 AAACCCTAAT
*
34071 AAACCCTAGT
1 AAACCCTAAT
**
34081 AAACCCTTGT
1 AAACCCTAAT
** **
34091 AAATACTTGT
1 AAACCCTAAT
*
34101 AAACCCTAGT
1 AAACCCTAAT
*
34111 AAACCCTTAT
1 AAACCCTAAT
* * *
34121 AAATCCTTAC
1 AAACCCTAAT
34131 AAACCCTAAT
1 AAACCCTAAT
*
34141 AAACCCTAGT
1 AAACCCTAAT
**
34151 AAACCCTAGC
1 AAACCCTAAT
*
34161 AAACCTTAAT
1 AAACCCTAAT
*
34171 AAACCCTAGT
1 AAACCCTAAT
**
34181 AAACCCTAGC
1 AAACCCTAAT
34191 AAACCCTAAT
1 AAACCCTAAT
**
34201 AAACCCTTGT
1 AAACCCTAAT
*
34211 -AACCCTTTAT
1 AAACCC-TAAT
*
34221 AAACCCTAGT
1 AAACCCTAAT
34231 AAACCC-ATAT
1 AAACCCTA-AT
*
34241 AAACCCTAAC
1 AAACCCTAAT
* *
34251 AAACCTTAGT
1 AAACCCTAAT
*
34261 AAACCCTAAC
1 AAACCCTAAT
*
34271 AAACCCTAGT
1 AAACCCTAAT
*
34281 AAATCCTAAT
1 AAACCCTAAT
**
34291 AAACCCTAGG
1 AAACCCTAAT
34301 AAACCCTAAACCTT
1 AAACCCT-AA---T
**
34315 AAACCCTAGC
1 AAACCCTAAT
*
34325 AAACCTTAAT
1 AAACCCTAAT
*
34335 AAACCCTAGT
1 AAACCCTAAT
*
34345 AAACTCTAAT
1 AAACCCTAAT
34355 AAACCCTAAT
1 AAACCCTAAT
* **
34365 AAAACCTTTT
1 AAACCCTAAT
* *
34375 AAACCTTTAT
1 AAACCCTAAT
**
34385 AAACCCTAGC
1 AAACCCTAAT
* *
34395 AAACTCTTAT
1 AAACCCTAAT
*
34405 AAACCCTTAT
1 AAACCCTAAT
**
34415 AAACCCTAGC
1 AAACCCTAAT
*
34425 AAACCCTTAT
1 AAACCCTAAT
**
34435 AAACCCTAGC
1 AAACCCTAAT
**
34445 AAACCCTAGC
1 AAACCCTAAT
**
34455 AAACCCTAGC
1 AAACCCTAAT
*
34465 AAACCCTAAG
1 AAACCCTAAT
34475 AAACCCTAGA-
1 AAACCCTA-AT
34485 AAACCCTAGA-
1 AAACCCTA-AT
*
34495 AAACCCTAGT
1 AAACCCTAAT
34505 AAACCCTAAT
1 AAACCCTAAT
**
34515 AAACCCTTGT
1 AAACCCTAAT
34525 AAACCCTAAT
1 AAACCCTAAT
* * *
34535 AAATCTTAGT
1 AAACCCTAAT
*** *
34545 AAATTTTAGT
1 AAACCCTAAT
** *
34555 AAAAACTAGT
1 AAACCCTAAT
*
34565 AAACCCTTAT
1 AAACCCTAAT
* *
34575 AAACCTTAGT
1 AAACCCTAAT
*
34585 AAACCCTTAT
1 AAACCCTAAT
*
34595 AAACCTTAAT
1 AAACCCTAAT
34605 AAA-CCT-AT
1 AAACCCTAAT
*
34613 AAAACCCTACT
1 -AAACCCTAAT
*
34624 AAACCCTTAT
1 AAACCCTAAT
** **
34634 AAATGCTTGT
1 AAACCCTAAT
34644 -AACCCTAAT
1 AAACCCTAAT
*
34653 AAACCCTAGT
1 AAACCCTAAT
*
34663 AAAACC-AAGT
1 AAACCCTAA-T
**
34673 AAACCCTTGT
1 AAACCCTAAT
***
34683 AAACCCTTGC
1 AAACCCTAAT
* *
34693 AAACCCTTAC
1 AAACCCTAAT
* **
34703 AAATCCTAGC
1 AAACCCTAAT
34713 AAACCCTAGA-
1 AAACCCTA-AT
* *
34723 AAACTCTAAA
1 AAACCCTAAT
*
34733 AAACCCTTAT
1 AAACCCTAAT
*
34743 AAACCCTAGT
1 AAACCCTAAT
*
34753 AAACCCTTAT
1 AAACCCTAAT
* *
34763 AAACCTTAGT
1 AAACCCTAAT
*
34773 AAACCCTTAT
1 AAACCCTAAT
** *
34783 AAATACTTAT
1 AAACCCTAAT
34793 AAACCCTAAT
1 AAACCCTAAT
*
34803 AAACCCTAGT
1 AAACCCTAAT
* *
34813 AACCCCTAGT
1 AAACCCTAAT
*
34823 AAACCCTTAT
1 AAACCCTAAT
* *
34833 AAACCATAGT
1 AAACCCTAAT
*
34843 AAA-CCTGAGT
1 AAACCCT-AAT
*
34853 AAACCCTTAT
1 AAACCCTAAT
** *
34863 AAAATCTAGT
1 AAACCCTAAT
* **
34873 TAACCCTAGC
1 AAACCCTAAT
**
34883 AAACCCTTGT
1 AAACCCTAAT
* *
34893 AAACCTTAAC
1 AAACCCTAAT
*
34903 AAACCCTAGT
1 AAACCCTAAT
* *
34913 AAAACCTAAC
1 AAACCCTAAT
* * *
34923 AAACCATTAC
1 AAACCCTAAT
34933 AAACCCTAGA-
1 AAACCCTA-AT
*
34943 AAACCCTTAT
1 AAACCCTAAT
* *
34953 AAACCTTTAT
1 AAACCCTAAT
*
34963 AAA-CCTAGT
1 AAACCCTAAT
*
34972 AAACCCTTAT
1 AAACCCTAAT
* *
34982 AAACTCTTAT
1 AAACCCTAAT
*
34992 AAACCCTTAT
1 AAACCCTAAT
* *
35002 AAACCTTAGT
1 AAACCCTAAT
**
35012 AAACCCTTGT
1 AAACCCTAAT
*
35022 AAACCCTATT
1 AAACCCTAAT
* *
35032 AAATCCTAGT
1 AAACCCTAAT
**
35042 AAACCCTAGC
1 AAACCCTAAT
**
35052 AAACCCTAGC
1 AAACCCTAAT
*
35062 AAACCCTAGT
1 AAACCCTAAT
* *
35072 AAATCCTAGT
1 AAACCCTAAT
**
35082 AAACCCTAGC
1 AAACCCTAAT
*
35092 AAATCCTAGA-
1 AAACCCTA-AT
35102 AAACCCTAAT
1 AAACCCTAAT
*
35112 AAACCCTAGT
1 AAACCCTAAT
* * *
35122 AAATCATAGT
1 AAACCCTAAT
*
35132 AAACCATAAT
1 AAACCCTAAT
*
35142 AAACCCTAGT
1 AAACCCTAAT
* * *
35152 CAACACTTAT
1 AAACCCTAAT
* *
35162 AAAGCCTTAT
1 AAACCCTAAT
* **
35172 AAATCCTAGC
1 AAACCCTAAT
* *
35182 AAACACTAAC
1 AAACCCTAAT
* **
35192 AAACCTTAGC
1 AAACCCTAAT
** *
35202 AAACTATTAT
1 AAACCCTAAT
*
35212 AAACCCTAAC
1 AAACCCTAAT
**
35222 AAACCCTAGC
1 AAACCCTAAT
* * *
35232 AAATCTTAGT
1 AAACCCTAAT
*
35242 AAACCCTAAC
1 AAACCCTAAT
**
35252 AAACCCTAGG
1 AAACCCTAAT
* *
35262 AAACCCAAAG
1 AAACCCTAAT
* *
35272 AAACCCTTAC
1 AAACCCTAAT
**
35282 AAACCCTAGC
1 AAACCCTAAT
*
35292 AAATCCTAAT
1 AAACCCTAAT
*
35302 AAACCCTATT
1 AAACCCTAAT
* *
35312 AAATCCTAAA
1 AAACCCTAAT
*
35322 AAACCCTAGT
1 AAACCCTAAT
*
35332 AAATCCTAAT
1 AAACCCTAAT
*
35342 AAACCCTAGT
1 AAACCCTAAT
* *
35352 AAATCCTAGT
1 AAACCCTAAT
* **
35362 AAACCCCAGC
1 AAACCCTAAT
*
35372 AAATCCTAGA-
1 AAACCCTA-AT
* *
35382 AAACCCCACT
1 AAACCCTAAT
*
35392 AAACCCTAGT
1 AAACCCTAAT
* *
35402 AAACACTAGT
1 AAACCCTAAT
* **
35412 AAATCCTTGT
1 AAACCCTAAT
*
35422 AAACCCTATT
1 AAACCCTAAT
35432 AAACCCTAAT
1 AAACCCTAAT
*
35442 AAACCCTAGT
1 AAACCCTAAT
*
35452 AAACCCTTAT
1 AAACCCTAAT
* *
35462 GAACCCTAGT
1 AAACCCTAAT
**
35472 AGTCCCTTAA-
1 AAACCC-TAAT
*
35482 AAACCCTTAT
1 AAACCCTAAT
*
35492 AAA-CCTAGT
1 AAACCCTAAT
**
35501 AAACCCTTTT
1 AAACCCTAAT
*
35511 AAACCTTAAT
1 AAACCCTAAT
*
35521 AAACCCTAGT
1 AAACCCTAAT
**
35531 AAACCCTTCT
1 AAACCCTAAT
35541 AAACCCT-AT
1 AAACCCTAAT
*
35550 TAACCCTAAT
1 AAACCCTAAT
*
35560 AAAACCCTTAT
1 -AAACCCTAAT
* *
35571 AAA-ACTACT
1 AAACCCTAAT
*
35580 AAACCCTAGT
1 AAACCCTAAT
* *
35590 GAACCCTTAT
1 AAACCCTAAT
* **
35600 AAATCCTTGT
1 AAACCCTAAT
* **
35610 AAACCTTGGT
1 AAACCCTAAT
*
35620 AAATCCTAAT
1 AAACCCTAAT
35630 AAACCCT-AT
1 AAACCCTAAT
* *
35639 CAAATCCTAAA
1 -AAACCCTAAT
* *
35650 AAATCCTAGT
1 AAACCCTAAT
*
35660 AAATCCTAAT
1 AAACCCTAAT
*
35670 AAACCCTAGT
1 AAACCCTAAT
*
35680 AAATCCTAAT
1 AAACCCTAAT
* **
35690 AAACCCCAGC
1 AAACCCTAAT
*
35700 AAATCCTAGA-
1 AAACCCTA-AT
* *
35710 AAACCCCACT
1 AAACCCTAAT
*
35720 AAACCCTAGT
1 AAACCCTAAT
* *
35730 AAACACTAGT
1 AAACCCTAAT
* **
35740 AAATCCTTGT
1 AAACCCTAAT
*
35750 AAACCCTATT
1 AAACCCTAAT
35760 AAACCCTAAT
1 AAACCCTAAT
* *
35770 AAACCTTAGT
1 AAACCCTAAT
*
35780 AAACCCTTAT
1 AAACCCTAAT
* *
35790 GAACCCTAGT
1 AAACCCTAAT
**
35800 AGTCCCTTAA-
1 AAACCC-TAAT
*
35810 AAACCCTTAT
1 AAACCCTAAT
*
35820 AAACCCTAGT
1 AAACCCTAAT
**
35830 AAACCCTTTT
1 AAACCCTAAT
*
35840 AAACCTTAAT
1 AAACCCTAAT
*
35850 AAACCCTAGT
1 AAACCCTAAT
**
35860 AAACCCTTCT
1 AAACCCTAAT
35870 AAACCCT-AT
1 AAACCCTAAT
*
35879 TAACCCTAAT
1 AAACCCTAAT
*
35889 AAACCCTTAT
1 AAACCCTAAT
*
35899 AAA-ACTAAT
1 AAACCCTAAT
*
35908 AAACCCTAGT
1 AAACCCTAAT
* *
35918 GAACCCTTAT
1 AAACCCTAAT
* *
35928 AAATCCTTAT
1 AAACCCTAAT
* *
35938 AAACCTTAGT
1 AAACCCTAAT
* * *
35948 AAATCTTAGT
1 AAACCCTAAT
* *
35958 AAACCTTAGT
1 AAACCCTAAT
35968 AAACCCTAAT
1 AAACCCTAAT
*
35978 AATCCCT-AT
1 AAACCCTAAT
35987 -AACCC-AAGT
1 AAACCCTAA-T
* **
35996 AATCTTTAAT
1 AAACCCTAAT
* *
36006 AAATCCTAGT
1 AAACCCTAAT
**
36016 AAACCCTTGT
1 AAACCCTAAT
* *
36026 ATACCCTTAT
1 AAACCCTAAT
* *
36036 AAATCCTAGT
1 AAACCCTAAT
*
36046 AAACCCTTAT
1 AAACCCTAAT
*
36056 AAACCCTAGT
1 AAACCCTAAT
*
36066 ACACCCTAAT
1 AAACCCTAAT
* *
36076 ATACCCTAGT
1 AAACCCTAAT
36086 AAACCCTAAT
1 AAACCCTAAT
*
36096 AAACCCTAGT
1 AAACCCTAAT
* ** *
36106 TAACATTTAT
1 AAACCCTAAT
*
36116 AAACCCTTAT
1 AAACCCTAAT
36126 AAACCCTAAT
1 AAACCCTAAT
36136 AAACCCTAAT
1 AAACCCTAAT
* * *
36146 ACACCTTAGT
1 AAACCCTAAT
36156 AAACCCT--T
1 AAACCCTAAT
*
36164 GAACACCCTAGT
1 -AA-ACCCTAAT
* *
36176 ACACCCTAGT
1 AAACCCTAAT
** *
36186 ACGCCCTAGT
1 AAACCCTAAT
36196 AAACCCTAAT
1 AAACCCTAAT
*
36206 AAACCCTATT
1 AAACCCTAAT
*
36216 AAATCCTAAT
1 AAACCCTAAT
**
36226 AAACCCTTGT
1 AAACCCTAAT
* **
36236 AGACCCTTGT
1 AAACCCTAAT
*** *
36246 AAATATTAGT
1 AAACCCTAAT
*
36256 AAACCATAAT
1 AAACCCTAAT
*
36266 AAACCCTAGT
1 AAACCCTAAT
* *
36276 AAATCTTAAT
1 AAACCCTAAT
*
36286 AAACCCTAGT
1 AAACCCTAAT
*
36296 AAACCCTTAT
1 AAACCCTAAT
*
36306 AAACCCTAGT
1 AAACCCTAAT
*** *
36316 AAATTATTAT
1 AAACCCTAAT
36326 AAACCCTAAT
1 AAACCCTAAT
* * *
36336 AAATCATAGT
1 AAACCCTAAT
*
36346 AAA-CCTGAGT
1 AAACCCT-AAT
*
36356 AAACCCTTAT
1 AAACCCTAAT
* *
36366 AAATCCTAGT
1 AAACCCTAAT
36376 AAACCCTAAT
1 AAACCCTAAT
* *
36386 AAACTCTAGT
1 AAACCCTAAT
36396 AAACCCTAAT
1 AAACCCTAAT
* *
36406 ATACCCTATT
1 AAACCCTAAT
* * *
36416 ACACTCTAGT
1 AAACCCTAAT
* *
36426 AAAGCCTAGT
1 AAACCCTAAT
* *
36436 AAACCATAGT
1 AAACCCTAAT
36446 AAACCCTAAT
1 AAACCCTAAT
* *
36456 AAATCCTAGT
1 AAACCCTAAT
36466 AAACCCTAA
1 AAACCCTAA
36475 CCCCAAAAAA
Statistics
Matches: 3074, Mismatches: 865, Indels: 216
0.74 0.21 0.05
Matches are distributed among these distances:
5 2 0.00
6 3 0.00
7 6 0.00
8 12 0.00
9 177 0.06
10 2784 0.91
11 80 0.03
12 2 0.00
13 1 0.00
14 7 0.00
ACGTcount: A:0.43, C:0.28, G:0.06, T:0.23
Consensus pattern (10 bp):
AAACCCTAAT
Found at i:32452 original size:30 final size:30
Alignment explanation
Indices: 32418--36474 Score: 2138
Period size: 30 Copynumber: 135.6 Consensus size: 30
32408 AAACCTTTAC
* *
32418 AAACCCTAGCAAATCCTAATAAACCCTAAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* *
32448 AAACCCTCGTAAA-CC---T-AACCCTTAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
** *
32473 AAACCCTAAG-AAACCCTAGCAAACCCTAGT
1 AAACCCT-AGTAAACCCTAATAAACCCTAAT
* * *
32503 AAACTCTTA-TAAACCCTAACAAACCCTAGT
1 AAAC-CCTAGTAAACCCTAATAAACCCTAAT
* ** *
32533 AAACCCTAGAAAACTATAACAAACCCTAAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* ** *
32563 AAACCCTAGTAAACCCTCATAAAAACTAGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * *
32593 AAACCTTAGTAAATCCTTATAAACCCTAGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * *
32623 AAACCTTTA-TAAACCCAAATAAACCCTCAT
1 AAACC-CTAGTAAACCCTAATAAACCCTAAT
* * * * **
32653 AAACCCTAGGAAACCCTAAAAAAACTTAGC
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* ** *
32683 AAACCCTTA-TAAACCCTAGTAATTCCTAGT
1 AAACCC-TAGTAAACCCTAATAAACCCTAAT
* * * *
32713 AAATCATAGTAAACTCTTATAAACCCTAGA-
1 AAACCCTAGTAAACCCTAATAAACCCTA-AT
* **
32743 AAACCCTAGCAAACCCTAGGAAA-CCT-AT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * ** * *
32771 CAAATCCTAGAAAACCCTAGGAAATCCTACT
1 -AAACCCTAGTAAACCCTAATAAACCCTAAT
* * *
32802 AAACCCTAGAAAAACCCTAGA-AAATCCTACT
1 AAACCCTAG-TAAACCCTA-ATAAACCCTAAT
* **
32833 AAACCCCAAAAAAACCCTAGA-AAACCCTAAT
1 AAA-CCCTAGTAAACCCTA-ATAAACCCTAAT
* ** * **
32864 AAACCCTTGTAAACCCTTGTAAACCTTTGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * ** * * **
32894 AAACCCTCGTAAAACCTAGGAAAACTTAGG
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * ** * **
32924 AAAACCTAGCAAACCCTTGTAAATCCTAGC
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * **
32954 AAACCCTAGTAAACCCTTACAAACCCTAGC
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * *
32984 AAACCCAAGTAAACCCTAA-GAACCTCTAAC
1 AAACCCTAGTAAACCCTAATAAACC-CTAAT
* * **
33014 AAACCCTAGCAAACCCTAAGAAACCCTAGC
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * *
33044 AAACCCTAGTAAACCATAAAAAACCCTAGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * *
33074 AAACTCTAATAAACCCTAATAAACCCTATT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
*
33104 AAACTCCTA-TAACCCCTAA-AAACCCTAAT
1 AAAC-CCTAGTAAACCCTAATAAACCCTAAT
* * ** **
33133 AAACCCTAGCAAACCCTAGTAAACTTTAGG
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
** * * * **
33163 AAAAACTAGCAAATCCTAAGAAACCCTAGC
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * *
33193 AAACTCTAGTAAACCCCT-TTAAACCCTTAT
1 AAACCCTAGTAAA-CCCTAATAAACCCTAAT
* *
33223 AAACCCTAGTAAACCCTTATAAA-CCTTAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * *
33252 AAACCTTAGCAAACCCTTATAAACCCTAAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * *
33282 AACCCCTAGTAAACCTTTATAAATCC---T
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * *
33309 AAACCCTAATAAATCCTAGTAAACCCTAGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * ** *
33339 AAATACTTA-TAAACCCTTGTAAACCCTAGT
1 AAA-CCCTAGTAAACCCTAATAAACCCTAAT
* * **
33369 AAATCCTAGTAAACCCTTATAAACCCTAGC
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * *
33399 AAA-CCTTGTAAACCCTAGTAAACCCTAAC
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * **
33428 AAACCCTAGTAACCCCTTATAAACCCTTTT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * **
33458 AAA-CCTAACTAAACCCTTATAAA-CCTAGC
1 AAACCCT-AGTAAACCCTAATAAACCCTAAT
* ** * **
33487 AAATCCTAACAAACCCTAACAAACCCTACC
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* *
33517 AAACCCTAATAAACCCTTATAAA-CCTCAAT
1 AAACCCTAGTAAACCCTAATAAACCCT-AAT
* * *
33547 AAACCCTTA-TAAACACTTATAAACCCTAGT
1 AAACCC-TAGTAAACCCTAATAAACCCTAAT
* * *
33577 AAACCCTAGTAAACCTTATTAAACCCTAGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * *
33607 AAACCCTTA-TAAACTCTTATAAAACATAAT
1 AAACCC-TAGTAAACCCTAATAAACCCTAAT
* * *
33637 AAACCCTAGCAAA-CCAAAGTAAACCATAAT
1 AAACCCTAGTAAACCCTAA-TAAACCCTAAT
* *
33667 AAACCCATA-TAAACCCTTATAATCCCTAAT
1 AAACCC-TAGTAAACCCTAATAAACCCTAAT
* * *
33697 AAACCCTAATAAATCCTAGTAAACCCT-AT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * **
33726 -TATCCTAGCAAACCCTAAT-AACCCTAGC
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
*
33754 AAACCCTAGCAAACCC-AATTAAACCCCT-AT
1 AAACCCTAGTAAACCCTAA-TAAA-CCCTAAT
** **
33784 AAACCCTTA-TAAACCCTAGGAAACCCTAGC
1 AAACCC-TAGTAAACCCTAATAAACCCTAAT
** *
33814 AAACCCTTA-TAGCCCCTAA-AAACCCTAGT
1 AAACCC-TAGTAAACCCTAATAAACCCTAAT
* *
33843 AAACCCTTA-AAAACCCTAGA-AAACCCTAAG
1 AAACCC-TAGTAAACCCTA-ATAAACCCTAAT
* * * *
33873 AAACCCTAAG-AAACCCAAAAAAACCTTAAC
1 AAACCCT-AGTAAACCCTAATAAACCCTAAT
**
33903 AAACCCTAACAAACCCT-ATGAAACCCTAAT
1 AAACCCTAGTAAACCCTAAT-AAACCCTAAT
* * *
33933 AAACCCTAGGAAACCCTAGTAAACCCTTAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* *
33963 AAACCCTAGTAAACCATAATAAACCCTAGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
*** ** * *
33993 AAATTTTAGTAAAAACTAGTAAGCCCTAA-
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * *
34022 AAACCCTAATAAACCCTTATAAACCCTAGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* *
34052 AAACCCTTA-TAAACCCT-AGAAACCCTAGT
1 AAACCC-TAGTAAACCCTAATAAACCCTAAT
* ** ** *
34081 AAACCCTTGTAAATACTTGTAAACCCTAGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * *
34111 AAACCCTTA-TAAATCCTTACAAACCCTAAT
1 AAACCC-TAGTAAACCCTAATAAACCCTAAT
** *
34141 AAACCCTAGTAAACCCTAGCAAACCTTAAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
**
34171 AAACCCTAGTAAACCCTAGCAAACCCTAAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * *
34201 AAACCCTTGT-AACCCTTTATAAACCCTAGT
1 AAACCCTAGTAAACCC-TAATAAACCCTAAT
* * *
34231 AAACCCATA-TAAACCCTAACAAACCTTAGT
1 AAACCC-TAGTAAACCCTAATAAACCCTAAT
** * *
34261 AAACCCTAACAAACCCTAGTAAATCCTAAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* **
34291 AAACCCTAGGAAACCCTAAACCTTAAACCCTAGC
1 AAACCCTAGTAAACCCT-AA---TAAACCCTAAT
* * * *
34325 AAACCTTAATAAACCCTAGTAAACTCTAAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * ** * *
34355 AAACCCTAATAAAACCTTTTAAACCTTTAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * *
34385 AAACCCTAGCAAACTCTTATAAACCCTTAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * **
34415 AAACCCTAGCAAACCCTTATAAACCCTAGC
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* ** *
34445 AAACCCTAGCAAACCCTAGCAAACCCTAAG
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* *
34475 AAACCCTAGAAAACCCTAGA-AAACCCTAGT
1 AAACCCTAGTAAACCCTA-ATAAACCCTAAT
* **
34505 AAACCCTAATAAACCCTTGTAAACCCTAAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * *** * ** *
34535 AAATCTTAGTAAATTTTAGTAAAAACTAGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * *
34565 AAACCCTTA-TAAACCTTAGTAAACCCTTAT
1 AAACCC-TAGTAAACCCTAATAAACCCTAAT
* * *
34595 AAACCTTAATAAA-CCT-ATAAAACCCTACT
1 AAACCCTAGTAAACCCTAAT-AAACCCTAAT
** **
34624 AAACCCTTA-TAAATGCTTGT-AACCCTAAT
1 AAACCC-TAGTAAACCCTAATAAACCCTAAT
* **
34653 AAACCCTAGTAAAACC-AAGTAAACCCTTGT
1 AAACCCTAGTAAACCCTAA-TAAACCCTAAT
* * * * * **
34683 AAACCCTTGCAAACCCTTACAAATCCTAGC
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * *
34713 AAACCCTAGAAAACTCTAAAAAACCCTTAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * *
34743 AAACCCTAGTAAACCCTTATAAACCTTAGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
** *
34773 AAACCCTTA-TAAATACTTATAAACCCTAAT
1 AAACCC-TAGTAAACCCTAATAAACCCTAAT
* * *
34803 AAACCCTAGTAACCCCTAGTAAACCCTTAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* *
34833 AAACCATAGTAAA-CCTGAGTAAACCCTTATAAAATCT
1 AAACCCTAGTAAACCCT-AATAAACCC---T--AA--T
* ** * *
34870 AGTTAACCCTAGCAAACCCTTGTAAACCTTAAC
1 A---AACCCTAGTAAACCCTAATAAACCCTAAT
* * * * *
34903 AAACCCTAGTAAAACCTAACAAACCATTAC
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * *
34933 AAACCCTAGAAAACCCTTATAAACCTTTAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * *
34963 AAA-CCTAGTAAACCCTTATAAACTCTTAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * **
34992 AAACCCTTA-TAAACCTTAGTAAACCCTTGT
1 AAACCC-TAGTAAACCCTAATAAACCCTAAT
* * * **
35022 AAACCCTATTAAATCCTAGTAAACCCTAGC
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * *
35052 AAACCCTAGCAAACCCTAGTAAATCCTAGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * **
35082 AAACCCTAGCAAATCCTAGAAAACCCTAAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * *
35112 AAACCCTAGTAAATCATAGTAAACCATAAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * * *
35142 AAACCCTAGTCAACACTTATAAAGCCTTAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * * * **
35172 AAATCCTAGCAAACACTAACAAACCTTAGC
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
** * **
35202 AAACTATTA-TAAACCCTAACAAACCCTAGC
1 AAAC-CCTAGTAAACCCTAATAAACCCTAAT
* * * **
35232 AAATCTTAGTAAACCCTAACAAACCCTAGG
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * **
35262 AAACCCAAAG-AAACCCTTACAAACCCTAGC
1 AAACCC-TAGTAAACCCTAATAAACCCTAAT
* * * * *
35292 AAATCCTAATAAACCCTATTAAATCCTAAA
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* *
35322 AAACCCTAGTAAATCCTAATAAACCCTAGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * ** *
35352 AAATCCTAGTAAACCCCAGCAAATCCTAGA-
1 AAACCCTAGTAAACCCTAATAAACCCTA-AT
* * * * *
35382 AAACCCCACTAAACCCTAGTAAACACTAGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * *
35412 AAATCCTTGTAAACCCTATTAAACCCTAAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * *
35442 AAACCCTAGTAAACCCTTATGAACCCTAGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
** * * *
35472 AGTCCCTTA-AAAACCCTTATAAA-CCTAGT
1 AAACCC-TAGTAAACCCTAATAAACCCTAAT
** * *
35501 AAACCCTTTTAAACCTTAATAAACCCTAGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
** *
35531 AAACCCTTCTAAACCCT-ATTAACCCTAAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * *
35560 AAAACCCTTA-TAAA-ACTACTAAACCCTAGT
1 -AAACCC-TAGTAAACCCTAATAAACCCTAAT
* * ** * **
35590 GAACCCTTA-TAAATCCTTGTAAACCTTGGT
1 AAACCC-TAGTAAACCCTAATAAACCCTAAT
* * * *
35620 AAATCCTAATAAACCCT-ATCAAATCCTAAA
1 AAACCCTAGTAAACCCTAAT-AAACCCTAAT
* * *
35650 AAATCCTAGTAAATCCTAATAAACCCTAGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * ** *
35680 AAATCCTAATAAACCCCAGCAAATCCTAGA-
1 AAACCCTAGTAAACCCTAATAAACCCTA-AT
* * * * *
35710 AAACCCCACTAAACCCTAGTAAACACTAGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * *
35740 AAATCCTTGTAAACCCTATTAAACCCTAAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * *
35770 AAACCTTAGTAAACCCTTATGAACCCTAGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
** * * *
35800 AGTCCCTTA-AAAACCCTTATAAACCCTAGT
1 AAACCC-TAGTAAACCCTAATAAACCCTAAT
** * *
35830 AAACCCTTTTAAACCTTAATAAACCCTAGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
** *
35860 AAACCCTTCTAAACCCT-ATTAACCCTAAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* *
35889 AAACCCTTA-TAAA-ACTAATAAACCCTAGT
1 AAACCC-TAGTAAACCCTAATAAACCCTAAT
* * * * *
35918 GAACCCTTA-TAAATCCTTATAAACCTTAGT
1 AAACCC-TAGTAAACCCTAATAAACCCTAAT
* * * *
35948 AAATCTTAGTAAACCTTAGTAAACCCTAAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * **
35978 AATCCCTA-T-AACCC-AAGTAATCTTTAAT
1 AAACCCTAGTAAACCCTAA-TAAACCCTAAT
* ** * *
36006 AAATCCTAGTAAACCCTTGTATACCCTTAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * *
36036 AAATCCTAGTAAACCCTTATAAACCCTAGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * *
36066 ACACCCTAATATACCCTAGTAAACCCTAAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* ** * *
36096 AAACCCTAGTTAACATTTATAAACCCTTAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * *
36126 AAACCCTAATAAACCCTAATACACCTTAGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * *
36156 AAACCCTTG-AACACCCTAGTACACCCTAGT
1 AAACCCTAGTAA-ACCCTAATAAACCCTAAT
** *
36186 ACGCCCTAGTAAACCCTAATAAACCCTATT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * ** * **
36216 AAATCCTAATAAACCCTTGTAGACCCTTGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
*** * *
36246 AAATATTAGTAAACCATAATAAACCCTAGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * * *
36276 AAATCTTAATAAACCCTAGTAAACCCTTAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
*** *
36306 AAACCCTAGTAAATTATTATAAACCCTAAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * *
36336 AAATCATAGTAAA-CCTGAGTAAACCCTTAT
1 AAACCCTAGTAAACCCT-AATAAACCCTAAT
* * *
36366 AAATCCTAGTAAACCCTAATAAACTCTAGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * * * *
36396 AAACCCTAATATACCCTATTACACTCTAGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * *
36426 AAAGCCTAGTAAACCATAGTAAACCCTAAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
*
36456 AAATCCTAGTAAACCCTAA
1 AAACCCTAGTAAACCCTAA
36475 CCCCAAAAAA
Statistics
Matches: 3120, Mismatches: 768, Indels: 278
0.75 0.18 0.07
Matches are distributed among these distances:
25 18 0.01
26 4 0.00
27 28 0.01
28 44 0.01
29 423 0.14
30 2429 0.78
31 119 0.04
32 4 0.00
33 3 0.00
34 22 0.01
35 3 0.00
37 3 0.00
40 17 0.01
41 3 0.00
ACGTcount: A:0.43, C:0.28, G:0.06, T:0.23
Consensus pattern (30 bp):
AAACCCTAGTAAACCCTAATAAACCCTAAT
Found at i:34976 original size:49 final size:49
Alignment explanation
Indices: 34903--35026 Score: 126
Period size: 49 Copynumber: 2.5 Consensus size: 49
34893 AAACCTTAAC
* **
34903 AAACCCTAGTAAAACCTAACAAACCATTACAAAC-CCTAGAAAACCCTTAT
1 AAACCTTAGT-AAACCTAGTAAACCATTACAAACTCCTA-AAAACCCTTAT
* * * *
34953 AAACCTTTA-TAAACCTAGTAAACCCTTATAAACTCTTATAAACCCTTAT
1 AAACC-TTAGTAAACCTAGTAAACCATTACAAACTCCTAAAAACCCTTAT
*
35002 AAACCTTAGTAAACCCTTGTAAACC
1 AAACCTTAGTAAA-CCTAGTAAACC
35027 CTATTAAATC
Statistics
Matches: 62, Mismatches: 8, Indels: 8
0.79 0.10 0.10
Matches are distributed among these distances:
48 3 0.05
49 38 0.61
50 19 0.31
51 2 0.03
ACGTcount: A:0.44, C:0.27, G:0.04, T:0.25
Consensus pattern (49 bp):
AAACCTTAGTAAACCTAGTAAACCATTACAAACTCCTAAAAACCCTTAT
Found at i:36474 original size:20 final size:20
Alignment explanation
Indices: 32418--36473 Score: 2230
Period size: 20 Copynumber: 204.4 Consensus size: 20
32408 AAACCTTTAC
* *
32418 AAACCCTAGCAAATCCTAAT
1 AAACCCTAGTAAACCCTAAT
* **
32438 AAACCCTAATAAACCCTCGT
1 AAACCCTAGTAAACCCTAAT
*
32458 AAA-CC---T-AACCCTTAT
1 AAACCCTAGTAAACCCTAAT
**
32473 AAACCCTAAG-AAACCCTAGC
1 AAACCCT-AGTAAACCCTAAT
* *
32493 AAACCCTAGTAAACTCTTAT
1 AAACCCTAGTAAACCCTAAT
** *
32513 AAACCCTAACAAACCCTAGT
1 AAACCCTAGTAAACCCTAAT
* ** *
32533 AAACCCTAGAAAACTATAAC
1 AAACCCTAGTAAACCCTAAT
* *
32553 AAACCCTAATAAACCCTAGT
1 AAACCCTAGTAAACCCTAAT
** *
32573 AAACCCTCA-TAAAAACTAGT
1 AAACCCT-AGTAAACCCTAAT
* * *
32593 AAACCTTAGTAAATCCTTAT
1 AAACCCTAGTAAACCCTAAT
* *
32613 AAACCCTAGTAAACCTTTAT
1 AAACCCTAGTAAACCCTAAT
* * *
32633 AAACCCAAATAAACCCTCAT
1 AAACCCTAGTAAACCCTAAT
* *
32653 AAACCCTAGGAAACCCTAAA
1 AAACCCTAGTAAACCCTAAT
* * * *
32673 AAAACTTAGCAAACCCTTAT
1 AAACCCTAGTAAACCCTAAT
** *
32693 AAACCCTAGTAATTCCTAGT
1 AAACCCTAGTAAACCCTAAT
* * * *
32713 AAATCATAGTAAACTCTTAT
1 AAACCCTAGTAAACCCTAAT
* **
32733 AAACCCTAGAAAACCCTAGC
1 AAACCCTAGTAAACCCTAAT
*
32753 AAACCCTAGGAAA-CCT-AT
1 AAACCCTAGTAAACCCTAAT
* * **
32771 CAAATCCTAGAAAACCCTAGG
1 -AAACCCTAGTAAACCCTAAT
* * *
32792 AAATCCTACTAAACCCTAGAA
1 AAACCCTAGTAAACCCTA-AT
* * *
32813 AAACCCTAGAAAATCCTACT
1 AAACCCTAGTAAACCCTAAT
* **
32833 AAACCCCAAAAAAACCCTAGA-
1 AAA-CCCTAGTAAACCCTA-AT
* **
32854 AAACCCTAATAAACCCTTGT
1 AAACCCTAGTAAACCCTAAT
* * **
32874 AAACCCTTGTAAACCTTTGT
1 AAACCCTAGTAAACCCTAAT
* * **
32894 AAACCCTCGTAAAACCTAGG
1 AAACCCTAGTAAACCCTAAT
* * * * **
32914 AAAACTTAGGAAAACCTAGC
1 AAACCCTAGTAAACCCTAAT
* * **
32934 AAACCCTTGTAAATCCTAGC
1 AAACCCTAGTAAACCCTAAT
* *
32954 AAACCCTAGTAAACCCTTAC
1 AAACCCTAGTAAACCCTAAT
*
32974 AAACCCTAGCAAACCC-AAGT
1 AAACCCTAGTAAACCCTAA-T
*
32994 AAACCCTA--AGAACCTCTAAC
1 AAACCCTAGTA-AACC-CTAAT
* *
33014 AAACCCTAGCAAACCCTAAG
1 AAACCCTAGTAAACCCTAAT
* *
33034 AAACCCTAGCAAACCCTAGT
1 AAACCCTAGTAAACCCTAAT
* ** *
33054 AAACCATAAAAAACCCTAGT
1 AAACCCTAGTAAACCCTAAT
* *
33074 AAACTCTAATAAACCCTAAT
1 AAACCCTAGTAAACCCTAAT
*
33094 AAACCCTATTAAACTCCT-AT
1 AAACCCTAGTAAAC-CCTAAT
* *
33114 AACCCCTA-AAAACCCTAAT
1 AAACCCTAGTAAACCCTAAT
* *
33133 AAACCCTAGCAAACCCTAGT
1 AAACCCTAGTAAACCCTAAT
** * ** **
33153 AAACTTTAGGAAAAACTAGC
1 AAACCCTAGTAAACCCTAAT
* **
33173 AAATCCTAAG-AAACCCTAGC
1 AAACCCT-AGTAAACCCTAAT
* *
33193 AAACTCTAGTAAACCCCT-TT
1 AAACCCTAGTAAA-CCCTAAT
*
33213 AAACCCTTA-TAAACCCTAGT
1 AAACCC-TAGTAAACCCTAAT
*
33233 AAACCCTTA-TAAA-CCTTAT
1 AAACCC-TAGTAAACCCTAAT
* * *
33252 AAACCTTAGCAAACCCTTAT
1 AAACCCTAGTAAACCCTAAT
* * *
33272 AAACCCTAATAACCCCTAGT
1 AAACCCTAGTAAACCCTAAT
* *
33292 AAACCTTTA-TAAATCC---T
1 AAACC-CTAGTAAACCCTAAT
* * *
33309 AAACCCTAATAAATCCTAGT
1 AAACCCTAGTAAACCCTAAT
** *
33329 AAACCCTAGTAAATACTTAT
1 AAACCCTAGTAAACCCTAAT
* *
33349 AAACCCTTGTAAACCCTAGT
1 AAACCCTAGTAAACCCTAAT
* *
33369 AAATCCTAGTAAACCCTTAT
1 AAACCCTAGTAAACCCTAAT
* **
33389 AAACCCTAGCAAA-CCTTGT
1 AAACCCTAGTAAACCCTAAT
*
33408 AAACCCTAGTAAACCCTAAC
1 AAACCCTAGTAAACCCTAAT
* *
33428 AAACCCTAGTAACCCCTTAT
1 AAACCCTAGTAAACCCTAAT
**
33448 AAACCCTTTTAAA-CCTAACT
1 AAACCCTAGTAAACCCTAA-T
**
33468 AAACCCTTA-TAAA-CCTAGC
1 AAACCC-TAGTAAACCCTAAT
* ** *
33487 AAATCCTAACAAACCCTAAC
1 AAACCCTAGTAAACCCTAAT
**
33507 AAACCCTACCAAACCCTAAT
1 AAACCCTAGTAAACCCTAAT
33527 AAACCCTTA-TAAA-CCTCAAT
1 AAACCC-TAGTAAACCCT-AAT
* *
33547 AAACCCTTA-TAAACACTTAT
1 AAACCC-TAGTAAACCCTAAT
*
33567 AAACCCTAGTAAACCCTAGT
1 AAACCCTAGTAAACCCTAAT
* * *
33587 AAACCTTATTAAACCCTAGT
1 AAACCCTAGTAAACCCTAAT
* *
33607 AAACCCTTA-TAAACTCTTAT
1 AAACCC-TAGTAAACCCTAAT
* * * **
33627 AAAACATAATAAACCCTAGC
1 AAACCCTAGTAAACCCTAAT
** *
33647 AAACCAAAGTAAACCATAAT
1 AAACCCTAGTAAACCCTAAT
*
33667 AAACCCATA-TAAACCCTTAT
1 AAACCC-TAGTAAACCCTAAT
* *
33687 AATCCCTAATAAACCCTAAT
1 AAACCCTAGTAAACCCTAAT
*
33707 AAATCCTAGTAAACCCT-AT
1 AAACCCTAGTAAACCCTAAT
* * *
33726 -TATCCTAGCAAACCCTAAT
1 AAACCCTAGTAAACCCTAAT
* **
33745 -AACCCTAGCAAACCCTAGC
1 AAACCCTAGTAAACCCTAAT
* *
33764 AAACCCAATTAAACCCCT-AT
1 AAACCCTAGTAAA-CCCTAAT
**
33784 AAACCCTTA-TAAACCCTAGG
1 AAACCC-TAGTAAACCCTAAT
* *
33804 AAACCCTAGCAAACCCTTAT
1 AAACCCTAGTAAACCCTAAT
** * *
33824 AGCCCCTA-AAAACCCTAGT
1 AAACCCTAGTAAACCCTAAT
*
33843 AAACCCTTA-AAAACCCTAGA-
1 AAACCC-TAGTAAACCCTA-AT
*
33863 AAACCCTAAG-AAACCCTAAG
1 AAACCCT-AGTAAACCCTAAT
* ** * *
33883 AAACCCAAAAAAACCTTAAC
1 AAACCCTAGTAAACCCTAAT
**
33903 AAACCCTAACAAACCCT-AT
1 AAACCCTAGTAAACCCTAAT
* **
33922 GAAACCCTAATAAACCCTAGG
1 -AAACCCTAGTAAACCCTAAT
*
33943 AAACCCTAGTAAACCCTTAT
1 AAACCCTAGTAAACCCTAAT
*
33963 AAACCCTAGTAAACCATAAT
1 AAACCCTAGTAAACCCTAAT
*** *
33983 AAACCCTAGTAAATTTTAGT
1 AAACCCTAGTAAACCCTAAT
** *
34003 AAAAACTAGTAAGCCCTAA-
1 AAACCCTAGTAAACCCTAAT
* *
34022 AAACCCTAATAAACCCTTAT
1 AAACCCTAGTAAACCCTAAT
*
34042 AAACCCTAGTAAACCCTTAT
1 AAACCCTAGTAAACCCTAAT
*
34062 AAACCCTAG-AAACCCTAGT
1 AAACCCTAGTAAACCCTAAT
* ** **
34081 AAACCCTTGTAAATACTTGT
1 AAACCCTAGTAAACCCTAAT
*
34101 AAACCCTAGTAAACCCTTAT
1 AAACCCTAGTAAACCCTAAT
* *
34121 AAATCCTTA-CAAACCCTAAT
1 AAA-CCCTAGTAAACCCTAAT
**
34141 AAACCCTAGTAAACCCTAGC
1 AAACCCTAGTAAACCCTAAT
* * *
34161 AAACCTTAATAAACCCTAGT
1 AAACCCTAGTAAACCCTAAT
*
34181 AAACCCTAGCAAACCCTAAT
1 AAACCCTAGTAAACCCTAAT
*
34201 AAACCCTTGT-AACCCT--T
1 AAACCCTAGTAAACCCTAAT
*
34218 ------TA-TAAACCCTAGT
1 AAACCCTAGTAAACCCTAAT
*
34231 AAACCCATA-TAAACCCTAAC
1 AAACCC-TAGTAAACCCTAAT
* *
34251 AAACCTTAGTAAACCCTAAC
1 AAACCCTAGTAAACCCTAAT
*
34271 AAACCCTAGTAAATCCTAAT
1 AAACCCTAGTAAACCCTAAT
*
34291 AAACCCTAGGAAACCCTAAACCTT
1 AAACCCTAGTAAACCCT-AA---T
* *
34315 AAACCCTAGCAAACCTTAAT
1 AAACCCTAGTAAACCCTAAT
*
34335 AAACCCTAGTAAACTCTAAT
1 AAACCCTAGTAAACCCTAAT
* * **
34355 AAACCCTAATAAAACCTTTT
1 AAACCCTAGTAAACCCTAAT
* **
34375 AAACCTTTA-TAAACCCTAGC
1 AAACC-CTAGTAAACCCTAAT
* *
34395 AAACTCTTA-TAAACCCTTAT
1 AAAC-CCTAGTAAACCCTAAT
* *
34415 AAACCCTAGCAAACCCTTAT
1 AAACCCTAGTAAACCCTAAT
* **
34435 AAACCCTAGCAAACCCTAGC
1 AAACCCTAGTAAACCCTAAT
* *
34455 AAACCCTAGCAAACCCTAAG
1 AAACCCTAGTAAACCCTAAT
*
34475 AAACCCTAGAAAACCCTAGA-
1 AAACCCTAGTAAACCCTA-AT
34495 AAACCCTAGTAAACCCTAAT
1 AAACCCTAGTAAACCCTAAT
*
34515 AAACCCTTGTAAACCCTAAT
1 AAACCCTAGTAAACCCTAAT
* * *** *
34535 AAATCTTAGTAAATTTTAGT
1 AAACCCTAGTAAACCCTAAT
** *
34555 AAAAACTAGTAAACCCTTAT
1 AAACCCTAGTAAACCCTAAT
* *
34575 AAACCTTAGTAAACCCTTAT
1 AAACCCTAGTAAACCCTAAT
* *
34595 AAACCTTAATAAA-CCT-AT
1 AAACCCTAGTAAACCCTAAT
* *
34613 AAAACCCTACTAAACCCTTAT
1 -AAACCCTAGTAAACCCTAAT
** *
34634 AAATGCTTGT-AACCCTAAT
1 AAACCCTAGTAAACCCTAAT
*
34653 AAACCCTAGTAAAACC-AAGT
1 AAACCCTAGTAAACCCTAA-T
*
34673 AAACCCTTGTAAACCCTTGCAAACCCTT
1 AAACCCTAGTAAACCC-T---AA----T
* *
34701 ACAAATCCTAGCAAACCCTAGA-
1 --AAACCCTAGTAAACCCTA-AT
* ** *
34723 AAACTCTAAAAAACCCTTAT
1 AAACCCTAGTAAACCCTAAT
*
34743 AAACCCTAGTAAACCCTTAT
1 AAACCCTAGTAAACCCTAAT
* *
34763 AAACCTTAGTAAACCCTTAT
1 AAACCCTAGTAAACCCTAAT
* *
34783 AAATACTTA-TAAACCCTAAT
1 AAA-CCCTAGTAAACCCTAAT
* *
34803 AAACCCTAGTAACCCCTAGT
1 AAACCCTAGTAAACCCTAAT
* *
34823 AAACCCTTA-TAAACCATAGT
1 AAACCC-TAGTAAACCCTAAT
*
34843 AAA-CCTGAGTAAACCCTTAT
1 AAACCCT-AGTAAACCCTAAT
** * **
34863 AAAATCTAGTTAACCCTAGC
1 AAACCCTAGTAAACCCTAAT
* * *
34883 AAACCCTTGTAAACCTTAAC
1 AAACCCTAGTAAACCCTAAT
* *
34903 AAACCCTAGTAAAACCTAAC
1 AAACCCTAGTAAACCCTAAT
* *
34923 AAACCATTA-CAAACCCTAGA-
1 AAACC-CTAGTAAACCCTA-AT
* *
34943 AAACCCTTA-TAAACCTTTAT
1 AAACCC-TAGTAAACCCTAAT
*
34963 AAA-CCTAGTAAACCCTTAT
1 AAACCCTAGTAAACCCTAAT
* *
34982 AAACTCTTA-TAAACCCTTAT
1 AAAC-CCTAGTAAACCCTAAT
* **
35002 AAACCTTAGTAAACCCTTGT
1 AAACCCTAGTAAACCCTAAT
* * *
35022 AAACCCTATTAAATCCTAGT
1 AAACCCTAGTAAACCCTAAT
* **
35042 AAACCCTAGCAAACCCTAGC
1 AAACCCTAGTAAACCCTAAT
* *
35062 AAACCCTAGTAAATCCTAGT
1 AAACCCTAGTAAACCCTAAT
* *
35082 AAACCCTAGCAAATCCTAGA-
1 AAACCCTAGTAAACCCTA-AT
* *
35102 AAACCCTAATAAACCCTAGT
1 AAACCCTAGTAAACCCTAAT
* * *
35122 AAATCATAGTAAACCATAAT
1 AAACCCTAGTAAACCCTAAT
* * *
35142 AAACCCTAGTCAACACTTAT
1 AAACCCTAGTAAACCCTAAT
* * **
35162 AAAGCCTTA-TAAATCCTAGC
1 AAA-CCCTAGTAAACCCTAAT
* ** * **
35182 AAACACTAACAAACCTTAGC
1 AAACCCTAGTAAACCCTAAT
** *
35202 AAACTATTA-TAAACCCTAAC
1 AAAC-CCTAGTAAACCCTAAT
* * * *
35222 AAACCCTAGCAAATCTTAGT
1 AAACCCTAGTAAACCCTAAT
** **
35242 AAACCCTAACAAACCCTAGG
1 AAACCCTAGTAAACCCTAAT
* * *
35262 AAACCCAAAG-AAACCCTTAC
1 AAACCC-TAGTAAACCCTAAT
* *
35282 AAACCCTAGCAAATCCTAAT
1 AAACCCTAGTAAACCCTAAT
* * *
35302 AAACCCTATTAAATCCTAAA
1 AAACCCTAGTAAACCCTAAT
*
35322 AAACCCTAGTAAATCCTAAT
1 AAACCCTAGTAAACCCTAAT
* *
35342 AAACCCTAGTAAATCCTAGT
1 AAACCCTAGTAAACCCTAAT
* * *
35362 AAACCCCAGCAAATCCTAGA-
1 AAACCCTAGTAAACCCTA-AT
* * *
35382 AAACCCCACTAAACCCTAGT
1 AAACCCTAGTAAACCCTAAT
* * **
35402 AAACACTAGTAAATCCTTGT
1 AAACCCTAGTAAACCCTAAT
*
35422 AAACCCTATTAAACCCTAAT
1 AAACCCTAGTAAACCCTAAT
*
35442 AAACCCTAGTAAACCCTTAT
1 AAACCCTAGTAAACCCTAAT
* **
35462 GAACCCTAGTAGTCCCTTAA-
1 AAACCCTAGTAAACCC-TAAT
*
35482 AAACCCTTA-TAAA-CCTAGT
1 AAACCC-TAGTAAACCCTAAT
** *
35501 AAACCCTTTTAAACCTTAAT
1 AAACCCTAGTAAACCCTAAT
**
35521 AAACCCTAGTAAACCCTTCT
1 AAACCCTAGTAAACCCTAAT
*
35541 AAACCCTA-TTAACCCTAAT
1 AAACCCTAGTAAACCCTAAT
* *
35560 AAAACCCTTA-TAAA-ACTACT
1 -AAACCC-TAGTAAACCCTAAT
* *
35580 AAACCCTAGTGAACCCTTAT
1 AAACCCTAGTAAACCCTAAT
* *
35600 AAATCCTTGTAAA-CC---T
1 AAACCCTAGTAAACCCTAAT
* *
35616 ------TGGTAAATCCTAAT
1 AAACCCTAGTAAACCCTAAT
* *
35630 AAACCCTA-TCAAATCCTAAA
1 AAACCCTAGT-AAACCCTAAT
* *
35650 AAATCCTAGTAAATCCTAAT
1 AAACCCTAGTAAACCCTAAT
*
35670 AAACCCTAGTAAATCCTAAT
1 AAACCCTAGTAAACCCTAAT
* * *
35690 AAACCCCAGCAAATCCTAGA-
1 AAACCCTAGTAAACCCTA-AT
* * *
35710 AAACCCCACTAAACCCTAGT
1 AAACCCTAGTAAACCCTAAT
* * **
35730 AAACACTAGTAAATCCTTGT
1 AAACCCTAGTAAACCCTAAT
*
35750 AAACCCTATTAAACCCTAAT
1 AAACCCTAGTAAACCCTAAT
* *
35770 AAACCTTAGTAAACCCTTAT
1 AAACCCTAGTAAACCCTAAT
* **
35790 GAACCCTAGTAGTCCCTTAA-
1 AAACCCTAGTAAACCC-TAAT
*
35810 AAACCCTTA-TAAACCCTAGT
1 AAACCC-TAGTAAACCCTAAT
** *
35830 AAACCCTTTTAAACCTTAAT
1 AAACCCTAGTAAACCCTAAT
**
35850 AAACCCTAGTAAACCCTTCT
1 AAACCCTAGTAAACCCTAAT
*
35870 AAACCCTA-TTAACCCTAAT
1 AAACCCTAGTAAACCCTAAT
*
35889 AAACCCTTA-TAAA-ACTAAT
1 AAACCC-TAGTAAACCCTAAT
* *
35908 AAACCCTAGTGAACCCTTAT
1 AAACCCTAGTAAACCCTAAT
* * *
35928 AAATCCTTA-TAAACCTTAGT
1 AAA-CCCTAGTAAACCCTAAT
* * * *
35948 AAATCTTAGTAAACCTTAGT
1 AAACCCTAGTAAACCCTAAT
* *
35968 AAACCCTAATAATCCCT-AT
1 AAACCCTAGTAAACCCTAAT
* * **
35987 -AACCCAAGTAATCTTTAAT
1 AAACCCTAGTAAACCCTAAT
* **
36006 AAATCCTAGTAAACCCTTGT
1 AAACCCTAGTAAACCCTAAT
* * *
36026 ATACCCTTA-TAAATCCTAGT
1 AAACCC-TAGTAAACCCTAAT
*
36046 AAACCCTTA-TAAACCCTAGT
1 AAACCC-TAGTAAACCCTAAT
* * * *
36066 ACACCCTAATATACCCTAGT
1 AAACCCTAGTAAACCCTAAT
* *
36086 AAACCCTAATAAACCCTAGT
1 AAACCCTAGTAAACCCTAAT
* ** *
36106 TAACATTTA-TAAACCCTTAT
1 AAAC-CCTAGTAAACCCTAAT
*
36126 AAACCCTAATAAACCCTAAT
1 AAACCCTAGTAAACCCTAAT
* *
36146 ACACCTTAGTAAACCCT--T
1 AAACCCTAGTAAACCCTAAT
* *
36164 GAACACCCTAGTACACCCTAGT
1 -AA-ACCCTAGTAAACCCTAAT
**
36186 ACGCCCTAGTAAACCCTAAT
1 AAACCCTAGTAAACCCTAAT
* *
36206 AAACCCTATTAAATCCTAAT
1 AAACCCTAGTAAACCCTAAT
* * **
36226 AAACCCTTGTAGACCCTTGT
1 AAACCCTAGTAAACCCTAAT
*** *
36246 AAATATTAGTAAACCATAAT
1 AAACCCTAGTAAACCCTAAT
* *
36266 AAACCCTAGTAAATCTTAAT
1 AAACCCTAGTAAACCCTAAT
*
36286 AAACCCTAGTAAACCCTTAT
1 AAACCCTAGTAAACCCTAAT
*** *
36306 AAACCCTAGTAAATTATTAT
1 AAACCCTAGTAAACCCTAAT
* * * *
36326 AAACCCTAATAAATCATAGT
1 AAACCCTAGTAAACCCTAAT
*
36346 AAA-CCTGAGTAAACCCTTAT
1 AAACCCT-AGTAAACCCTAAT
*
36366 AAATCCTAGTAAACCCTAAT
1 AAACCCTAGTAAACCCTAAT
*
36386 AAACTCTAGTAAACCCTAAT
1 AAACCCTAGTAAACCCTAAT
* * * * *
36406 ATACCCTATTACACTCTAGT
1 AAACCCTAGTAAACCCTAAT
* * *
36426 AAAGCCTAGTAAACCATAGT
1 AAACCCTAGTAAACCCTAAT
* * *
36446 AAACCCTAATAAATCCTAGT
1 AAACCCTAGTAAACCCTAAT
36466 AAACCCTA
1 AAACCCTA
36474 ACCCCAAAAA
Statistics
Matches: 3139, Mismatches: 724, Indels: 346
0.75 0.17 0.08
Matches are distributed among these distances:
10 7 0.00
11 9 0.00
13 1 0.00
14 1 0.00
15 10 0.00
16 6 0.00
17 14 0.00
18 47 0.01
19 323 0.10
20 2559 0.82
21 123 0.04
22 2 0.00
23 2 0.00
24 16 0.01
25 2 0.00
26 1 0.00
27 1 0.00
28 1 0.00
29 1 0.00
30 13 0.00
ACGTcount: A:0.43, C:0.28, G:0.06, T:0.23
Consensus pattern (20 bp):
AAACCCTAGTAAACCCTAAT
Found at i:41034 original size:18 final size:17
Alignment explanation
Indices: 41002--41035 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
40992 AGTTGAAGAG
*
41002 TAAAATAATATTAATAA
1 TAAAACAATATTAATAA
41019 TAAAACAATGATTAATA
1 TAAAACAAT-ATTAATA
41036 TGTGTGGGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.32
Consensus pattern (17 bp):
TAAAACAATATTAATAA
Found at i:41263 original size:21 final size:19
Alignment explanation
Indices: 41239--41419 Score: 146
Period size: 21 Copynumber: 8.8 Consensus size: 19
41229 CATATTCGCA
*
41239 TTGCGATAGTCCAAGTTCGCG
1 TTGCGATAGTCCAAATT--CG
**
41260 TTGCGATTTTCCAAATTCG
1 TTGCGATAGTCCAAATTCG
* *
41279 TTGCGATAGTTCAAGTTTGCG
1 TTGCGATAGTCCAA-ATT-CG
*
41300 TTGCGATTTATTCCAAATTCG
1 TTGCGA--TAGTCCAAATTCG
*
41321 TTGCGATAGTCCAAGTTCGCG
1 TTGCGATAGTCCAAATT--CG
* *
41342 TTGCGATTTATTACAAATTCG
1 TTGCGA--TAGTCCAAATTCG
*
41363 TTGCGATAGTCTCCAAGTTCG
1 TTGCGATAG--TCCAAATTCG
41384 TTGCGATAGTCTCCAAATTCG
1 TTGCGATAG--TCCAAATTCG
41405 TTGCGATAGTCCAAA
1 TTGCGATAGTCCAAA
41420 ATCGCAACGA
Statistics
Matches: 131, Mismatches: 19, Indels: 22
0.76 0.11 0.13
Matches are distributed among these distances:
19 30 0.23
20 2 0.02
21 83 0.63
22 2 0.02
23 14 0.11
ACGTcount: A:0.23, C:0.20, G:0.22, T:0.35
Consensus pattern (19 bp):
TTGCGATAGTCCAAATTCG
Found at i:41315 original size:42 final size:41
Alignment explanation
Indices: 41239--41418 Score: 251
Period size: 42 Copynumber: 4.3 Consensus size: 41
41229 CATATTCGCA
41239 TTGCGATAGTCCAAGTTCGCGTTGCGATT-TTCCAAATTCG
1 TTGCGATAGTCCAAGTTCGCGTTGCGATTATTCCAAATTCG
* *
41279 TTGCGATAGTTCAAGTTTGCGTTGCGATTTATTCCAAATTCG
1 TTGCGATAGTCCAAGTTCGCGTTGCGA-TTATTCCAAATTCG
*
41321 TTGCGATAGTCCAAGTTCGCGTTGCGATTTATTACAAATTCG
1 TTGCGATAGTCCAAGTTCGCGTTGCGA-TTATTCCAAATTCG
41363 TTGCGATAGTCTCCAAGTT--CGTTGCGA-TAGTCTCCAAATTCG
1 TTGCGATAG--TCCAAGTTCGCGTTGCGATTA-T-TCCAAATTCG
41405 TTGCGATAGTCCAA
1 TTGCGATAGTCCAA
41419 AATCGCAACG
Statistics
Matches: 128, Mismatches: 6, Indels: 12
0.88 0.04 0.08
Matches are distributed among these distances:
40 32 0.25
41 3 0.02
42 85 0.66
44 8 0.06
ACGTcount: A:0.22, C:0.21, G:0.22, T:0.36
Consensus pattern (41 bp):
TTGCGATAGTCCAAGTTCGCGTTGCGATTATTCCAAATTCG
Found at i:41407 original size:63 final size:62
Alignment explanation
Indices: 41239--41411 Score: 164
Period size: 63 Copynumber: 2.8 Consensus size: 62
41229 CATATTCGCA
* *
41239 TTGCGATAG-TCCAAGTTCGCGTTGCGAT-TTTCCAAATTCGTTGCGA-TAGTTCAAGTTTGCG
1 TTGCGATAGTTCCAAGTT--CGTTGCGATAGTTCCAAATTCGTTGCGATTAGTTCAAGATTGCG
* *
41300 TTGCGATTTA-TTCCAAATTCGTTGCGATAG-TCCAAGTTCGCGTTGCGATTTA-TTACAA-ATT
1 TTGCGA--TAGTTCCAAGTTCGTTGCGATAGTTCCAAATT--CGTTGCGA-TTAGTT-CAAGATT
41361 -CG
60 GCG
41363 TTGCGATAGTCTCCAAGTTCGTTGCGATAGTCTCCAAATTCGTTGCGAT
1 TTGCGATAGT-TCCAAGTTCGTTGCGATAGT-TCCAAATTCGTTGCGAT
41412 AGTCCAAAAT
Statistics
Matches: 93, Mismatches: 6, Indels: 25
0.75 0.05 0.20
Matches are distributed among these distances:
61 24 0.26
62 2 0.02
63 51 0.55
64 4 0.04
65 12 0.13
ACGTcount: A:0.21, C:0.20, G:0.22, T:0.36
Consensus pattern (62 bp):
TTGCGATAGTTCCAAGTTCGTTGCGATAGTTCCAAATTCGTTGCGATTAGTTCAAGATTGCG
Found at i:41966 original size:21 final size:21
Alignment explanation
Indices: 41936--42054 Score: 150
Period size: 21 Copynumber: 5.7 Consensus size: 21
41926 GATTCACCTG
*
41936 TCATCGTTCAAGAGGCCCCTC
1 TCATCATTCAAGAGGCCCCTC
*
41957 -CTATCATTCAAGAGACCCCTC
1 TC-ATCATTCAAGAGGCCCCTC
41978 TCATCATTCAAGAGGCCCCTC
1 TCATCATTCAAGAGGCCCCTC
*
41999 TCATCGTTCAAGAGGCCCCTC
1 TCATCATTCAAGAGGCCCCTC
**
42020 TCATTGTTCAAGAGGCCCCTC
1 TCATCATTCAAGAGGCCCCTC
* * *
42041 CCACCGTTCAAGAG
1 TCATCATTCAAGAG
42055 CCCGATTCAC
Statistics
Matches: 88, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
20 1 0.01
21 86 0.98
22 1 0.01
ACGTcount: A:0.23, C:0.37, G:0.17, T:0.24
Consensus pattern (21 bp):
TCATCATTCAAGAGGCCCCTC
Found at i:42014 original size:63 final size:63
Alignment explanation
Indices: 41936--42054 Score: 168
Period size: 63 Copynumber: 1.9 Consensus size: 63
41926 GATTCACCTG
* *
41936 TCATCGTTCAAGAGGCCCCTC-CTATCATTCAAGAGACCCCTCTCATCATTCAAGAGGCCCCTC
1 TCATCGTTCAAGAGGCCCCTCTC-ATCATTCAAGAGACCCCTCCCACCATTCAAGAGGCCCCTC
** * *
41999 TCATCGTTCAAGAGGCCCCTCTCATTGTTCAAGAGGCCCCTCCCACCGTTCAAGAG
1 TCATCGTTCAAGAGGCCCCTCTCATCATTCAAGAGACCCCTCCCACCATTCAAGAG
42055 CCCGATTCAC
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
63 48 0.98
64 1 0.02
ACGTcount: A:0.23, C:0.37, G:0.17, T:0.24
Consensus pattern (63 bp):
TCATCGTTCAAGAGGCCCCTCTCATCATTCAAGAGACCCCTCCCACCATTCAAGAGGCCCCTC
Found at i:43507 original size:29 final size:29
Alignment explanation
Indices: 43465--43582 Score: 191
Period size: 29 Copynumber: 4.1 Consensus size: 29
43455 CTTTCGCAAC
*
43465 GCGAAAGTCAAATTCGTGTTGTGATTGTT
1 GCGAAAGTCAAATTCGTGTTGCGATTGTT
43494 GCGAAAGTCAAATTCGTGTTGCGATTGTT
1 GCGAAAGTCAAATTCGTGTTGCGATTGTT
* *
43523 GTGAAAGTCAAATTCGTGTTGCGATTATT
1 GCGAAAGTCAAATTCGTGTTGCGATTGTT
* *
43552 GCAAAAGTCAAATTCGTGTTGCGATTTTT
1 GCGAAAGTCAAATTCGTGTTGCGATTGTT
43581 GC
1 GC
43583 CTTGCGAATT
Statistics
Matches: 83, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 83 1.00
ACGTcount: A:0.25, C:0.13, G:0.25, T:0.36
Consensus pattern (29 bp):
GCGAAAGTCAAATTCGTGTTGCGATTGTT
Found at i:43602 original size:20 final size:20
Alignment explanation
Indices: 43577--43619 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
43567 GTGTTGCGAT
*
43577 TTTTGCCTTGCGAATTTGAC
1 TTTTGCCTTGCAAATTTGAC
* *
43597 TTTTGCGTTGCAAATTTGTC
1 TTTTGCCTTGCAAATTTGAC
43617 TTT
1 TTT
43620 CACAACAATC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.14, C:0.16, G:0.19, T:0.51
Consensus pattern (20 bp):
TTTTGCCTTGCAAATTTGAC
Found at i:44060 original size:7 final size:7
Alignment explanation
Indices: 44048--44117 Score: 104
Period size: 7 Copynumber: 9.6 Consensus size: 7
44038 TCTTCTCTTC
44048 ACCCTAA
1 ACCCTAA
44055 ACCCTAA
1 ACCCTAA
44062 ACCCTAA
1 ACCCTAA
44069 ACCCTAA
1 ACCCTAA
44076 ACCCTAAA
1 ACCCT-AA
44084 CCACCCTAA
1 --ACCCTAA
44093 ACCCTAA
1 ACCCTAA
*
44100 ACCTTAA
1 ACCCTAA
44107 ACCCTAA
1 ACCCTAA
44114 ACCC
1 ACCC
44118 CGGACCCCGG
Statistics
Matches: 58, Mismatches: 2, Indels: 6
0.88 0.03 0.09
Matches are distributed among these distances:
7 49 0.84
8 2 0.03
9 2 0.03
10 5 0.09
ACGTcount: A:0.41, C:0.44, G:0.00, T:0.14
Consensus pattern (7 bp):
ACCCTAA
Found at i:44093 original size:31 final size:31
Alignment explanation
Indices: 44055--44116 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
44045 TTCACCCTAA
44055 ACCCTAAACCCTAAACCCTAAACCCTAAACC
1 ACCCTAAACCCTAAACCCTAAACCCTAAACC
*
44086 ACCCTAAACCCTAAACCTTAAACCCTAAACC
1 ACCCTAAACCCTAAACCCTAAACCCTAAACC
44117 CCGGACCCCG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.42, C:0.44, G:0.00, T:0.15
Consensus pattern (31 bp):
ACCCTAAACCCTAAACCCTAAACCCTAAACC
Found at i:44138 original size:6 final size:6
Alignment explanation
Indices: 44115--44447 Score: 232
Period size: 7 Copynumber: 51.5 Consensus size: 6
44105 AAACCCTAAA
*
44115 CCCCGG ACCCCGG CCCCCGG CCCCCGG CCCCCGG CCCCCGG ACCCGG ACCCCGG
1 CCCCGG -CCCCGG -CCCCGG -CCCCGG -CCCCGG -CCCCGG CCCCGG -CCCCGG
* * * ** ** *
44169 ACCCCGG ACCCGG ACCCGG ACCCCGAA CCCCGG -CCCTA CACCCTA ACCCGG
1 -CCCCGG CCCCGG CCCCGG -CCCCG-G CCCCGG CCCCGG C-CCCGG CCCCGG
*
44220 CCCCGG CCCCGG CCCCGG CCCCGG ACCCCCCGG ACCCCGG ACCCGG CCCCGG
1 CCCCGG CCCCGG CCCCGG CCCCGG ---CCCCGG -CCCCGG CCCCGG CCCCGG
44272 -CCCGG CCCCCGG CCCCGG CCCCCGG CCCC-- CCCCGG ACCCCGG CCCCCGG
1 CCCCGG -CCCCGG CCCCGG -CCCCGG CCCCGG CCCCGG -CCCCGG -CCCCGG
44321 ACCCCGG ACCCCCGG CCCCCGG CCCCGG CCCCGG CCCCGG CCCCGG CCCCGAG
1 -CCCCGG --CCCCGG -CCCCGG CCCCGG CCCCGG CCCCGG CCCCGG CCCCG-G
44374 CCCCGAG CCCCGAG CCCC-G -CCC-G CCCCGAG -CCCGAG CCCCGAG CCCCGAG
1 CCCCG-G CCCCG-G CCCCGG CCCCGG CCCCG-G CCCCG-G CCCCG-G CCCCG-G
44424 CCCCGAG CCCCGAG CCCCGAG CCC
1 CCCCG-G CCCCG-G CCCCG-G CCC
44448 GAACATTAGT
Statistics
Matches: 287, Mismatches: 19, Indels: 40
0.83 0.05 0.12
Matches are distributed among these distances:
4 8 0.03
5 12 0.04
6 97 0.34
7 158 0.55
8 6 0.02
9 6 0.02
ACGTcount: A:0.09, C:0.63, G:0.28, T:0.01
Consensus pattern (6 bp):
CCCCGG
Found at i:44138 original size:13 final size:13
Alignment explanation
Indices: 44115--44384 Score: 195
Period size: 12 Copynumber: 20.2 Consensus size: 13
44105 AAACCCTAAA
44115 CCCCGGACCCCGGC
1 CCCCGG-CCCCGGC
44129 CCCCGGCCCCCGGC
1 CCCCGG-CCCCGGC
44143 CCCCGGCCCCCGG-
1 CCCCGG-CCCCGGC
* *
44156 ACCCGGACCCCGGA
1 CCCCGG-CCCCGGC
*
44170 CCCCGGACCCGG-
1 CCCCGGCCCCGGC
* **
44182 ACCCGGACCCCGAA
1 CCCCGG-CCCCGGC
**
44196 CCCCGGCCCTACACC
1 CCCCGGCCC--CGGC
44211 CTAACCCGGCCCCGG-
1 C---CCCGGCCCCGGC
44226 CCCCGGCCCCGG-
1 CCCCGGCCCCGGC
*
44238 CCCCGGACCCCCCGGA
1 CCCCGG---CCCCGGC
*
44254 CCCCGGACCCGG-
1 CCCCGGCCCCGGC
44266 CCCCGG-CCCGGC
1 CCCCGGCCCCGGC
44278 CCCCGGCCCCGGC
1 CCCCGGCCCCGGC
44291 CCCCGG-CCC--C
1 CCCCGGCCCCGGC
44301 CCCCGGACCCCGGC
1 CCCCGG-CCCCGGC
44315 CCCCGGACCCCGGAC
1 CCCCGG-CCCCGG-C
44330 CCCCGGCCCCCGG-
1 CCCCGG-CCCCGGC
44343 CCCCGGCCCCGG-
1 CCCCGGCCCCGGC
44355 CCCCGGCCCCGG-
1 CCCCGGCCCCGGC
44367 CCCCGAGCCCCGAGC
1 CCCCG-GCCCCG-GC
44382 CCC
1 CCC
44385 GAGCCCCGCC
Statistics
Matches: 218, Mismatches: 16, Indels: 43
0.79 0.06 0.16
Matches are distributed among these distances:
10 7 0.03
11 5 0.02
12 63 0.29
13 52 0.24
14 51 0.23
15 25 0.11
16 7 0.03
18 8 0.04
ACGTcount: A:0.08, C:0.64, G:0.28, T:0.01
Consensus pattern (13 bp):
CCCCGGCCCCGGC
Found at i:49435 original size:20 final size:20
Alignment explanation
Indices: 49412--53469 Score: 2213
Period size: 20 Copynumber: 204.9 Consensus size: 20
49402 AAACCTTTAC
* *
49412 AAACCCTAGCAAATCCTAAT
1 AAACCCTAGTAAACCCTAAT
* **
49432 AAACCCTAATAAACCCTCGT
1 AAACCCTAGTAAACCCTAAT
*
49452 AAA-CC---T-AACCCTTAT
1 AAACCCTAGTAAACCCTAAT
**
49467 AAACCCTAAG-AAACCCTAGC
1 AAACCCT-AGTAAACCCTAAT
* *
49487 AAACCCTAGTAAACTCTTAT
1 AAACCCTAGTAAACCCTAAT
** *
49507 AAACCCTAACAAACCCTAGT
1 AAACCCTAGTAAACCCTAAT
* ** *
49527 AAACCCTA-AAAACTATAAC
1 AAACCCTAGTAAACCCTAAT
* *
49546 AAACCCTAATAAACCCTAGT
1 AAACCCTAGTAAACCCTAAT
** *
49566 AAACCCTCA-TAAAAACTAGT
1 AAACCCT-AGTAAACCCTAAT
* * *
49586 AAACCTTAGTAAATCCTTAT
1 AAACCCTAGTAAACCCTAAT
* *
49606 AAACCCTAGTAAACCTTTAT
1 AAACCCTAGTAAACCCTAAT
* * *
49626 AAACCCAAATAAACCCTCAT
1 AAACCCTAGTAAACCCTAAT
* *
49646 AAACCCTAGGAAACCCTAAA
1 AAACCCTAGTAAACCCTAAT
* * * *
49666 AAAACTTAGCAAACCCTTAT
1 AAACCCTAGTAAACCCTAAT
** *
49686 AAACCCTAGTAATTCCTAGT
1 AAACCCTAGTAAACCCTAAT
* * * *
49706 AAATCATAGTAAACTCTTAT
1 AAACCCTAGTAAACCCTAAT
* **
49726 AAACCCTAGAAAACCCTAGC
1 AAACCCTAGTAAACCCTAAT
*
49746 AAACCCTAG-AAAACCT-AT
1 AAACCCTAGTAAACCCTAAT
* * **
49764 CAAATCCTAGAAAACCCTAGG
1 -AAACCCTAGTAAACCCTAAT
* * *
49785 AAATCCTACTAAACCCTAGAA
1 AAACCCTAGTAAACCCTA-AT
* * *
49806 AAACCCTAGAAAATCCTACT
1 AAACCCTAGTAAACCCTAAT
* ** **
49826 AAACCCCAAAAAAACCCTAGC
1 AAA-CCCTAGTAAACCCTAAT
* **
49847 AAACCCTAATAAACCCTTGT
1 AAACCCTAGTAAACCCTAAT
* * **
49867 AAACCCTTGTAAACCTTTGT
1 AAACCCTAGTAAACCCTAAT
* * **
49887 AAACCCTCGTAAAACCTAGG
1 AAACCCTAGTAAACCCTAAT
* * * * **
49907 AAAACTTAGGAAAACCTAGC
1 AAACCCTAGTAAACCCTAAT
* * **
49927 AAACCCTTGTAAATCCTAGC
1 AAACCCTAGTAAACCCTAAT
** *
49947 AAACCCTAACAAACCCTAGT
1 AAACCCTAGTAAACCCTAAT
* **
49967 AAACCCTTA-CAAACCCTAGC
1 AAACCC-TAGTAAACCCTAAT
*
49987 AAACCCAAGTAAACCCTAA-
1 AAACCCTAGTAAACCCTAAT
* ** **
50006 GAACCTCTAACAAACCCTAGC
1 AAACC-CTAGTAAACCCTAAT
*
50027 AAACCCTAAG-AAACCCTAAC
1 AAACCCT-AGTAAACCCTAAT
* *
50047 AAACCCTAGTAAACCGTAAA
1 AAACCCTAGTAAACCCTAAT
*
50067 AAACCCTAGTAAACTCTAAT
1 AAACCCTAGTAAACCCTAAT
** *
50087 AAACCCTAACAAACCCTATT
1 AAACCCTAGTAAACCCTAAT
*
50107 AAACTCCTA-TAACCCCTAA-
1 AAAC-CCTAGTAAACCCTAAT
* **
50126 AAACCCTAATAAACCCTAGC
1 AAACCCTAGTAAACCCTAAT
* ** **
50146 AAACCCTAGCAAACTTTAGG
1 AAACCCTAGTAAACCCTAAT
** * * *
50166 AAAAACTAGCAAATCCTAAG
1 AAACCCTAGTAAACCCTAAT
* * *
50186 AAACCCTAGCAAACTCTAGT
1 AAACCCTAGTAAACCCTAAT
* *
50206 AAACCCCT-TTAAACCCTTAT
1 AAA-CCCTAGTAAACCCTAAT
*
50226 AAACCCTAGTAAACCCTTAT
1 AAACCCTAGTAAACCCTAAT
* *
50246 AAACCTTA--ACAACCCTAGT
1 AAACCCTAGTA-AACCCTAAT
* *
50265 AAACCCTTA-TAAACCTTAGT
1 AAACCC-TAGTAAACCCTAAT
* *
50285 AAATCCTAGTAAACCCTTAT
1 AAACCCTAGTAAACCCTAAT
* * **
50305 AAACCTTAGCAAACCCTTGT
1 AAACCCTAGTAAACCCTAAT
* * *
50325 AAACCCTAATAACCCCTAGT
1 AAACCCTAGTAAACCCTAAT
* *
50345 AAACCTTTA-TAAATCC---T
1 AAACC-CTAGTAAACCCTAAT
* * *
50362 AAACCCTAATAAATCCTAGT
1 AAACCCTAGTAAACCCTAAT
** *
50382 AAACCCTAGTAAATACTTAT
1 AAACCCTAGTAAACCCTAAT
* *
50402 AAACCCTTGTAAACCCTAGT
1 AAACCCTAGTAAACCCTAAT
* *
50422 AAATCCTAGTAAACCCTTAT
1 AAACCCTAGTAAACCCTAAT
*
50442 AAACCCTAGTAAACCCT-GT
1 AAACCCTAGTAAACCCTAAT
* *
50461 AAACCCTAGTAACCCCTTAT
1 AAACCCTAGTAAACCCTAAT
**
50481 AAACCCTTTTAAA-CCTAACT
1 AAACCCTAGTAAACCCTAA-T
** *
50501 AAACCCTTTTAAACCCTTAT
1 AAACCCTAGTAAACCCTAAT
* * *
50521 AAA-CCTAGCAAATCCTAAC
1 AAACCCTAGTAAACCCTAAT
** **
50540 AAACCCTAACAAACCCTACC
1 AAACCCTAGTAAACCCTAAT
50560 AAACCCTTA-TAAA-CCTCAAT
1 AAACCC-TAGTAAACCCT-AAT
* *
50580 AAACCCTTA-TAAACACTTAT
1 AAACCC-TAGTAAACCCTAAT
*
50600 AAACCCTAGTAAACCCTAGT
1 AAACCCTAGTAAACCCTAAT
* * *
50620 AAACCTTATTAAACCCTAGT
1 AAACCCTAGTAAACCCTAAT
* *
50640 AAACCCTTA-TAAACTCTTAT
1 AAACCC-TAGTAAACCCTAAT
* * * **
50660 AAAACATAATAAACCCTAGC
1 AAACCCTAGTAAACCCTAAT
** *
50680 AAACCAAAGTAAACCATAAT
1 AAACCCTAGTAAACCCTAAT
*
50700 AAACCCATA-TAAACCCTTAT
1 AAACCC-TAGTAAACCCTAAT
* *
50720 AATCCCTAATAAACCCTAAT
1 AAACCCTAGTAAACCCTAAT
*
50740 AAATCCTAGTAAACCCTATTATCCT
1 AAACCCTAGTAAACCCTA--A---T
**
50765 AGCAAACCCTAGT-AACCCTAGC
1 ---AAACCCTAGTAAACCCTAAT
*
50787 AAACCCTAGCAAACCC-AAGT
1 AAACCCTAGTAAACCCTAA-T
*
50807 AAACCCCT-GTAAACCCTTAT
1 AAA-CCCTAGTAAACCCTAAT
* **
50827 AAACCCTAGCAAACCCTAGC
1 AAACCCTAGTAAACCCTAAT
**
50847 AAACCCTTA-TAGCCCCTAA-
1 AAACCC-TAGTAAACCCTAAT
50866 AAACCCTAGTAAACCCTTAA-
1 AAACCCTAGTAAACCC-TAAT
* *
50886 AAACCCTAGAAAACCCTAAC
1 AAACCCTAGTAAACCCTAAT
*
50906 AAACCCTAAG-AAACCCTAAC
1 AAACCCT-AGTAAACCCTAAT
** *
50926 AAACCCTAACAAACCCTAAC
1 AAACCCTAGTAAACCCTAAT
50946 AAACCCTA-TGAAACCCTAAT
1 AAACCCTAGT-AAACCCTAAT
* *
50966 AAACCCTAGGAAACCCTAGT
1 AAACCCTAGTAAACCCTAAT
*
50986 AAACCCTTA-TAAACCCTAGT
1 AAACCC-TAGTAAACCCTAAT
* * *
51006 AAACCATAATAAACCCTAGT
1 AAACCCTAGTAAACCCTAAT
*** ** *
51026 AAATTTTAGTAAAAACTAGT
1 AAACCCTAGTAAACCCTAAT
* *
51046 AAGCCCTA-AAAACCCTAAT
1 AAACCCTAGTAAACCCTAAT
*
51065 AAACCCTTA-TAAACCCTAGT
1 AAACCC-TAGTAAACCCTAAT
*
51085 AAACCCTAG-AAACCCTAGT
1 AAACCCTAGTAAACCCTAAT
* ** **
51104 AAACCCTTGTAAATACTTGT
1 AAACCCTAGTAAACCCTAAT
*
51124 AAACCCTAGTAAACCCTTAT
1 AAACCCTAGTAAACCCTAAT
* *
51144 AAATCCTTA-CAAACCCTAAT
1 AAA-CCCTAGTAAACCCTAAT
**
51164 AAACCCTAGTAAACCCTAGC
1 AAACCCTAGTAAACCCTAAT
* * *
51184 AAACCTTAATAAACCCTAGT
1 AAACCCTAGTAAACCCTAAT
*
51204 AAACCCTAGCAAACCCTAAT
1 AAACCCTAGTAAACCCTAAT
*
51224 AAACCCT--TATAACCCTTTAT
1 AAACCCTAGTA-AACCC-TAAT
*
51244 AAACCCTAGTAAACCCTAGT
1 AAACCCTAGTAAACCCTAAT
*
51264 AAACCCATA-TAAACCCTAAC
1 AAACCC-TAGTAAACCCTAAT
* *
51284 AAACCTTAGTAAACCCTAAC
1 AAACCCTAGTAAACCCTAAT
*
51304 AAACCCTAGTAAATCCTAAT
1 AAACCCTAGTAAACCCTAAT
*
51324 AAACCCTAGGAAACCC---T
1 AAACCCTAGTAAACCCTAAT
* *
51341 AAA-CCT--TAAACTCTAAC
1 AAACCCTAGTAAACCCTAAT
* * *
51358 AAACCTTAATAAACCCTTAT
1 AAACCCTAGTAAACCCTAAT
* * **
51378 AAACCCTAATAAAACCTTCT
1 AAACCCTAGTAAACCCTAAT
* **
51398 AAACCTTTA-TAAACCCTAGC
1 AAACC-CTAGTAAACCCTAAT
* *
51418 AAACTCTTA-TAAACCCTTAT
1 AAAC-CCTAGTAAACCCTAAT
* *
51438 AAACCCTAGCAAACCCTTAT
1 AAACCCTAGTAAACCCTAAT
* **
51458 AAACCCTAGCAAACCCTAGC
1 AAACCCTAGTAAACCCTAAT
51478 AAACCCTAAG-AAACCCTAGA-
1 AAACCCT-AGTAAACCCTA-AT
51498 AAACCCTAGTAAACCCTAAT
1 AAACCCTAGTAAACCCTAAT
*
51518 AAACCCTTGTAAACCCTAAT
1 AAACCCTAGTAAACCCTAAT
* * *** *
51538 AAATCTTAGTAAATTTTAGT
1 AAACCCTAGTAAACCCTAAT
** *
51558 AAAAACTAGTAAACCCTTAT
1 AAACCCTAGTAAACCCTAAT
* *
51578 AAACCTTAGTAAACCCTTAT
1 AAACCCTAGTAAACCCTAAT
* *
51598 AAACCTTAATAAA-CCT-AT
1 AAACCCTAGTAAACCCTAAT
* *
51616 AAAACCCTACTAAACCCTTAT
1 -AAACCCTAGTAAACCCTAAT
** *
51637 AAATGCTTGT-AACCCTAAT
1 AAACCCTAGTAAACCCTAAT
51656 AAACCCTAG-------TAA-
1 AAACCCTAGTAAACCCTAAT
* **
51668 AAA-CCAAGTAAACCCTTGT
1 AAACCCTAGTAAACCCTAAT
* * * *
51687 AAACCCTTGCAAACCCTTAC
1 AAACCCTAGTAAACCCTAAT
* *
51707 AAATCCTAGCAAACCCTAGA-
1 AAACCCTAGTAAACCCTA-AT
* ** *
51727 AAACTCTAAAAAACCCTTAT
1 AAACCCTAGTAAACCCTAAT
*
51747 AAACCCTAGTAAACCCTTAT
1 AAACCCTAGTAAACCCTAAT
* *
51767 AAACCTTAGTAAACCCTTAT
1 AAACCCTAGTAAACCCTAAT
* *
51787 AAATACTTA-TAAACCCTAAT
1 AAA-CCCTAGTAAACCCTAAT
* *
51807 AAACCCTAGTAACCCCTAGT
1 AAACCCTAGTAAACCCTAAT
* * *
51827 AAATCCTTA-TAAACCATAGT
1 AAA-CCCTAGTAAACCCTAAT
*
51847 AAA-CCTGAGTAAACCCTTAT
1 AAACCCT-AGTAAACCCTAAT
** * **
51867 AAAATCTAGTTAACCCTAGC
1 AAACCCTAGTAAACCCTAAT
* * *
51887 AAACCCTTGTAAACCTTAAC
1 AAACCCTAGTAAACCCTAAT
* *
51907 AAACCCTAGTAAAACCTAAC
1 AAACCCTAGTAAACCCTAAT
* *
51927 AAACCATTA-CAAACCCTAGA-
1 AAACC-CTAGTAAACCCTA-AT
* **
51947 AAACCCTTA-TAAACCTTTGT
1 AAACCC-TAGTAAACCCTAAT
*
51967 AAACCCTAGTAAACCCTTAT
1 AAACCCTAGTAAACCCTAAT
* * *
51987 AAACCCTTA-CAAACCTTAGT
1 AAACCC-TAGTAAACCCTAAT
* *
52007 AAACCCTTGTAAACCCTATT
1 AAACCCTAGTAAACCCTAAT
* **
52027 AAATCCTAGTAAACCCTAGC
1 AAACCCTAGTAAACCCTAAT
* *
52047 AAACCCTAGTAAATCCTAGT
1 AAACCCTAGTAAACCCTAAT
* *
52067 AAACCCTAGCAAATCCTAGA-
1 AAACCCTAGTAAACCCTA-AT
* *
52087 AAACCCTAATAAACCCTAGT
1 AAACCCTAGTAAACCCTAAT
* * *
52107 AAATCATAGTAAACCATAAT
1 AAACCCTAGTAAACCCTAAT
* * *
52127 AAACCCTAGTCAACACTTAT
1 AAACCCTAGTAAACCCTAAT
* * **
52147 AAAGCCTTA-TAAATCCTAGC
1 AAA-CCCTAGTAAACCCTAAT
* ** * **
52167 AAACACTAACAAACCTTAGC
1 AAACCCTAGTAAACCCTAAT
** *
52187 AAACTATTA-TAAACCCTAAC
1 AAAC-CCTAGTAAACCCTAAT
* * * *
52207 AAACCCTAGCAAATCTTAGT
1 AAACCCTAGTAAACCCTAAT
** **
52227 AAACCCTAACAAACCCTAGG
1 AAACCCTAGTAAACCCTAAT
* * *
52247 AAACCCAAAG-AAACCCTTAC
1 AAACCC-TAGTAAACCCTAAT
* *
52267 AAACCCTAGCAAATCCTAAT
1 AAACCCTAGTAAACCCTAAT
* *
52287 AAACCCTA-TCAAATCCTAAA
1 AAACCCTAGT-AAACCCTAAT
*
52307 AAACCCTAGTAAATCCTAAT
1 AAACCCTAGTAAACCCTAAT
*
52327 AAACCCTAGTAAATCCTAAT
1 AAACCCTAGTAAACCCTAAT
* * *
52347 AAACCCCAGCAAATCCTAGA-
1 AAACCCTAGTAAACCCTA-AT
* * *
52367 AAACCCCACTAAACCCTAGT
1 AAACCCTAGTAAACCCTAAT
* * **
52387 AAACACTAGTAAATCCTTGT
1 AAACCCTAGTAAACCCTAAT
*
52407 AAACCCTATTAAACCCTAAT
1 AAACCCTAGTAAACCCTAAT
*
52427 AAACCCTAGTAAACCCTTAT
1 AAACCCTAGTAAACCCTAAT
* **
52447 GAACCCTAGTAGTCCCTTAA-
1 AAACCCTAGTAAACCC-TAAT
*
52467 AAACCCTTA-TAAACCCTAGT
1 AAACCC-TAGTAAACCCTAAT
** *
52487 AAACCCTTTTAAACCTTAAT
1 AAACCCTAGTAAACCCTAAT
**
52507 AAACCCTAGTAAACCCTTCT
1 AAACCCTAGTAAACCCTAAT
*
52527 AAACCCTA-TTAACCCTAAT
1 AAACCCTAGTAAACCCTAAT
* *
52546 AAACCCTTA-TAAA-ACTACT
1 AAACCC-TAGTAAACCCTAAT
* *
52565 AAACCCTAGTGAACCCTTAT
1 AAACCCTAGTAAACCCTAAT
* *
52585 AAATCCTTGTAAA-CC---T
1 AAACCCTAGTAAACCCTAAT
* *
52601 ------TGGTAAATCCTAAT
1 AAACCCTAGTAAACCCTAAT
* *
52615 AAACCCTA-TCAAATCCTAAA
1 AAACCCTAGT-AAACCCTAAT
* *
52635 AAACCCTAGTGAATCCTAAT
1 AAACCCTAGTAAACCCTAAT
*
52655 AAACCCTAGTAAATCCTAAT
1 AAACCCTAGTAAACCCTAAT
* * *
52675 AAACCCCAGCAAATCCTAGA-
1 AAACCCTAGTAAACCCTA-AT
* * *
52695 AAACCCCACTAAACCCTAGT
1 AAACCCTAGTAAACCCTAAT
* * **
52715 AAACACTAGTAAATCCTTGT
1 AAACCCTAGTAAACCCTAAT
* *
52735 AAATCCTATTAAACCCTAAT
1 AAACCCTAGTAAACCCTAAT
*
52755 AAACCCTAGTAAACCCTTAT
1 AAACCCTAGTAAACCCTAAT
* **
52775 GAACCCTAGTAGTCCCTTAA-
1 AAACCCTAGTAAACCC-TAAT
*
52795 AAACCCTTA-TAAACCCTAGT
1 AAACCC-TAGTAAACCCTAAT
** *
52815 AAACCCTTTTAAACCTTAAT
1 AAACCCTAGTAAACCCTAAT
**
52835 AAACCCTAGTAAACCCTTCT
1 AAACCCTAGTAAACCCTAAT
*
52855 AAACCCTA-TTAACCCTAAT
1 AAACCCTAGTAAACCCTAAT
*
52874 AAACCCTTA-TAAA-ACTAAT
1 AAACCC-TAGTAAACCCTAAT
* *
52893 AAACCCTAGTGAACCCTTAT
1 AAACCCTAGTAAACCCTAAT
* * * *
52913 AAATCCTTGTAAACCTTAGT
1 AAACCCTAGTAAACCCTAAT
* * * *
52933 AAATCTTAGTAAACCTTAGT
1 AAACCCTAGTAAACCCTAAT
* *
52953 AAACCCTAATAATCCCT-AT
1 AAACCCTAGTAAACCCTAAT
* * **
52972 -AACCCAAGTAATCTTTAAT
1 AAACCCTAGTAAACCCTAAT
* **
52991 AAATCCTAGTAAACCCTTGT
1 AAACCCTAGTAAACCCTAAT
* * *
53011 ATACCCTTA-TAAATCCTAGT
1 AAACCC-TAGTAAACCCTAAT
*
53031 AAACCCTTA-TAAACCCTAGT
1 AAACCC-TAGTAAACCCTAAT
* * * *
53051 ACACCCTAATATACCCTAGT
1 AAACCCTAGTAAACCCTAAT
* *
53071 AAACCCTAATAAACCCTAGT
1 AAACCCTAGTAAACCCTAAT
* ** *
53091 TAACATTTA-TAAACCCTTAT
1 AAAC-CCTAGTAAACCCTAAT
*
53111 AAACCCTAATAAACCCTAAT
1 AAACCCTAGTAAACCCTAAT
* *
53131 ACACCTTAGTAAACCCT--T
1 AAACCCTAGTAAACCCTAAT
* *
53149 GAACACCCTAGTACACCCTAGT
1 -AA-ACCCTAGTAAACCCTAAT
**
53171 ACGCCCTAGTAAACCCTAAT
1 AAACCCTAGTAAACCCTAAT
* *
53191 AAACCCTATTAAATCCTAAT
1 AAACCCTAGTAAACCCTAAT
* * **
53211 AAACCCTTGTAGACCCTTGT
1 AAACCCTAGTAAACCCTAAT
***
53231 AAATATTAGTAAACCCTAAT
1 AAACCCTAGTAAACCCTAAT
* *
53251 AAACCCTAGTAAATCTTAAT
1 AAACCCTAGTAAACCCTAAT
* *
53271 AAACCCTAATAAACCCTTAT
1 AAACCCTAGTAAACCCTAAT
*** *
53291 AAACCCTAGTAAATTATTAT
1 AAACCCTAGTAAACCCTAAT
* * * *
53311 AAACCCTAATAAATCATAGT
1 AAACCCTAGTAAACCCTAAT
*
53331 AAA-CCTAAGTAAACCCTTAT
1 AAACCCT-AGTAAACCCTAAT
*
53351 AAATCCTAGTAAACCCTAAT
1 AAACCCTAGTAAACCCTAAT
*
53371 AAACTCTAGTAAACCCTAAT
1 AAACCCTAGTAAACCCTAAT
* * * * *
53391 ATACCCTATTACACTCTAGT
1 AAACCCTAGTAAACCCTAAT
* * *
53411 AAAGCCTAGTAAACCATAGT
1 AAACCCTAGTAAACCCTAAT
* * *
53431 AAACCCTAATAAATCCTAGT
1 AAACCCTAGTAAACCCTAAT
53451 AAACCCTAGTAAACCCTAA
1 AAACCCTAGTAAACCCTAA
53470 CCCAAAAAAA
Statistics
Matches: 3134, Mismatches: 731, Indels: 346
0.74 0.17 0.08
Matches are distributed among these distances:
10 6 0.00
11 6 0.00
12 3 0.00
13 3 0.00
14 6 0.00
15 10 0.00
16 9 0.00
17 20 0.01
18 32 0.01
19 314 0.10
20 2572 0.82
21 132 0.04
22 4 0.00
25 1 0.00
27 7 0.00
28 9 0.00
ACGTcount: A:0.43, C:0.29, G:0.06, T:0.23
Consensus pattern (20 bp):
AAACCCTAGTAAACCCTAAT
Found at i:49440 original size:10 final size:10
Alignment explanation
Indices: 49412--53469 Score: 1901
Period size: 10 Copynumber: 407.9 Consensus size: 10
49402 AAACCTTTAC
**
49412 AAACCCTAGC
1 AAACCCTAAT
*
49422 AAATCCTAAT
1 AAACCCTAAT
49432 AAACCCTAAT
1 AAACCCTAAT
**
49442 AAACCCTCGT
1 AAACCCTAAT
49452 AAA-CC---T
1 AAACCCTAAT
*
49458 -AACCCTTAT
1 AAACCCTAAT
*
49467 AAACCCTAAG
1 AAACCCTAAT
**
49477 AAACCCTAGC
1 AAACCCTAAT
*
49487 AAACCCTAGT
1 AAACCCTAAT
* *
49497 AAACTCTTAT
1 AAACCCTAAT
*
49507 AAACCCTAAC
1 AAACCCTAAT
*
49517 AAACCCTAGT
1 AAACCCTAAT
49527 AAACCCTAA-
1 AAACCCTAAT
** *
49536 AAACTATAAC
1 AAACCCTAAT
49546 AAACCCTAAT
1 AAACCCTAAT
*
49556 AAACCCTAGT
1 AAACCCTAAT
*
49566 AAACCCTCAT
1 AAACCCTAAT
** *
49576 AAAAACTAGT
1 AAACCCTAAT
* *
49586 AAACCTTAGT
1 AAACCCTAAT
* *
49596 AAATCCTTAT
1 AAACCCTAAT
*
49606 AAACCCTAGT
1 AAACCCTAAT
* *
49616 AAACCTTTAT
1 AAACCCTAAT
*
49626 AAACCCAAAT
1 AAACCCTAAT
*
49636 AAACCCTCAT
1 AAACCCTAAT
**
49646 AAACCCTAGG
1 AAACCCTAAT
*
49656 AAACCCTAAA
1 AAACCCTAAT
* * **
49666 AAAACTTAGC
1 AAACCCTAAT
*
49676 AAACCCTTAT
1 AAACCCTAAT
*
49686 AAACCCTAGT
1 AAACCCTAAT
** *
49696 AATTCCTAGT
1 AAACCCTAAT
* * *
49706 AAATCATAGT
1 AAACCCTAAT
* *
49716 AAACTCTTAT
1 AAACCCTAAT
49726 AAACCCTAGA-
1 AAACCCTA-AT
**
49736 AAACCCTAGC
1 AAACCCTAAT
49746 AAACCCTAGA-
1 AAACCCTA-AT
49756 AAA-CCT-AT
1 AAACCCTAAT
*
49764 CAAATCCTAGA-
1 -AAACCCTA-AT
**
49775 AAACCCTAGG
1 AAACCCTAAT
* *
49785 AAATCCTACT
1 AAACCCTAAT
*
49795 AAACCCTAGAA
1 AAACCCTA-AT
49806 AAACCCTAGA-
1 AAACCCTA-AT
* *
49816 AAATCCTACT
1 AAACCCTAAT
* *
49826 AAACCCCAAAA
1 AAA-CCCTAAT
**
49837 AAACCCTAGC
1 AAACCCTAAT
49847 AAACCCTAAT
1 AAACCCTAAT
**
49857 AAACCCTTGT
1 AAACCCTAAT
**
49867 AAACCCTTGT
1 AAACCCTAAT
* **
49877 AAACCTTTGT
1 AAACCCTAAT
**
49887 AAACCCTCGT
1 AAACCCTAAT
* **
49897 AAAACCTAGG
1 AAACCCTAAT
* * **
49907 AAAACTTAGG
1 AAACCCTAAT
* **
49917 AAAACCTAGC
1 AAACCCTAAT
**
49927 AAACCCTTGT
1 AAACCCTAAT
* **
49937 AAATCCTAGC
1 AAACCCTAAT
*
49947 AAACCCTAAC
1 AAACCCTAAT
*
49957 AAACCCTAGT
1 AAACCCTAAT
* *
49967 AAACCCTTAC
1 AAACCCTAAT
**
49977 AAACCCTAGC
1 AAACCCTAAT
49987 AAACCC-AAGT
1 AAACCCTAA-T
49997 AAACCCTAA-
1 AAACCCTAAT
* *
50006 GAACCTCTAAC
1 AAACC-CTAAT
**
50017 AAACCCTAGC
1 AAACCCTAAT
*
50027 AAACCCTAAG
1 AAACCCTAAT
*
50037 AAACCCTAAC
1 AAACCCTAAT
*
50047 AAACCCTAGT
1 AAACCCTAAT
* *
50057 AAACCGTAAA
1 AAACCCTAAT
*
50067 AAACCCTAGT
1 AAACCCTAAT
*
50077 AAACTCTAAT
1 AAACCCTAAT
*
50087 AAACCCTAAC
1 AAACCCTAAT
*
50097 AAACCCTATT
1 AAACCCTAAT
50107 AAACTCCT-AT
1 AAAC-CCTAAT
*
50117 AACCCCTAA-
1 AAACCCTAAT
50126 AAACCCTAAT
1 AAACCCTAAT
**
50136 AAACCCTAGC
1 AAACCCTAAT
**
50146 AAACCCTAGC
1 AAACCCTAAT
** **
50156 AAACTTTAGG
1 AAACCCTAAT
** **
50166 AAAAACTAGC
1 AAACCCTAAT
* *
50176 AAATCCTAAG
1 AAACCCTAAT
**
50186 AAACCCTAGC
1 AAACCCTAAT
* *
50196 AAACTCTAGT
1 AAACCCTAAT
*
50206 AAACCCCT-TT
1 AAA-CCCTAAT
*
50216 AAACCCTTAT
1 AAACCCTAAT
*
50226 AAACCCTAGT
1 AAACCCTAAT
*
50236 AAACCCTTAT
1 AAACCCTAAT
*
50246 AAACCTTAA-
1 AAACCCTAAT
* *
50255 CAACCCTAGT
1 AAACCCTAAT
*
50265 AAACCCTTAT
1 AAACCCTAAT
* *
50275 AAACCTTAGT
1 AAACCCTAAT
* *
50285 AAATCCTAGT
1 AAACCCTAAT
*
50295 AAACCCTTAT
1 AAACCCTAAT
* **
50305 AAACCTTAGC
1 AAACCCTAAT
**
50315 AAACCCTTGT
1 AAACCCTAAT
50325 AAACCCTAAT
1 AAACCCTAAT
* *
50335 AACCCCTAGT
1 AAACCCTAAT
* *
50345 AAACCTTTAT
1 AAACCCTAAT
*
50355 AAATCC---T
1 AAACCCTAAT
50362 AAACCCTAAT
1 AAACCCTAAT
* *
50372 AAATCCTAGT
1 AAACCCTAAT
*
50382 AAACCCTAGT
1 AAACCCTAAT
** *
50392 AAATACTTAT
1 AAACCCTAAT
**
50402 AAACCCTTGT
1 AAACCCTAAT
*
50412 AAACCCTAGT
1 AAACCCTAAT
* *
50422 AAATCCTAGT
1 AAACCCTAAT
*
50432 AAACCCTTAT
1 AAACCCTAAT
*
50442 AAACCCTAGT
1 AAACCCTAAT
*
50452 AAACCCT-GT
1 AAACCCTAAT
*
50461 AAACCCTAGT
1 AAACCCTAAT
* *
50471 AACCCCTTAT
1 AAACCCTAAT
**
50481 AAACCCTTTT
1 AAACCCTAAT
50491 AAA-CCTAACT
1 AAACCCTAA-T
**
50501 AAACCCTTTT
1 AAACCCTAAT
*
50511 AAACCCTTAT
1 AAACCCTAAT
**
50521 AAA-CCTAGC
1 AAACCCTAAT
* *
50530 AAATCCTAAC
1 AAACCCTAAT
*
50540 AAACCCTAAC
1 AAACCCTAAT
**
50550 AAACCCTACC
1 AAACCCTAAT
*
50560 AAACCCTTAT
1 AAACCCTAAT
50570 AAA-CCTCAAT
1 AAACCCT-AAT
*
50580 AAACCCTTAT
1 AAACCCTAAT
* *
50590 AAACACTTAT
1 AAACCCTAAT
*
50600 AAACCCTAGT
1 AAACCCTAAT
*
50610 AAACCCTAGT
1 AAACCCTAAT
* *
50620 AAACCTTATT
1 AAACCCTAAT
*
50630 AAACCCTAGT
1 AAACCCTAAT
*
50640 AAACCCTTAT
1 AAACCCTAAT
* *
50650 AAACTCTTAT
1 AAACCCTAAT
* *
50660 AAAACATAAT
1 AAACCCTAAT
**
50670 AAACCCTAGC
1 AAACCCTAAT
*
50680 AAA-CCAAAGT
1 AAACCCTAA-T
*
50690 AAACCATAAT
1 AAACCCTAAT
50700 AAACCC-ATAT
1 AAACCCTA-AT
*
50710 AAACCCTTAT
1 AAACCCTAAT
*
50720 AATCCCTAAT
1 AAACCCTAAT
50730 AAACCCTAAT
1 AAACCCTAAT
* *
50740 AAATCCTAGT
1 AAACCCTAAT
50750 AAACCCT-AT
1 AAACCCTAAT
* * **
50759 -TATCCTAGC
1 AAACCCTAAT
*
50768 AAACCCTAGT
1 AAACCCTAAT
**
50778 -AACCCTAGC
1 AAACCCTAAT
**
50787 AAACCCTAGC
1 AAACCCTAAT
50797 AAACCC-AAGT
1 AAACCCTAA-T
*
50807 AAACCCCT-GT
1 AAA-CCCTAAT
*
50817 AAACCCTTAT
1 AAACCCTAAT
**
50827 AAACCCTAGC
1 AAACCCTAAT
**
50837 AAACCCTAGC
1 AAACCCTAAT
*
50847 AAACCCTTAT
1 AAACCCTAAT
**
50857 AGCCCCTAA-
1 AAACCCTAAT
*
50866 AAACCCTAGT
1 AAACCCTAAT
50876 AAACCCTTAA-
1 AAACCC-TAAT
50886 AAACCCTAGA-
1 AAACCCTA-AT
*
50896 AAACCCTAAC
1 AAACCCTAAT
*
50906 AAACCCTAAG
1 AAACCCTAAT
*
50916 AAACCCTAAC
1 AAACCCTAAT
*
50926 AAACCCTAAC
1 AAACCCTAAT
*
50936 AAACCCTAAC
1 AAACCCTAAT
50946 AAACCCT-AT
1 AAACCCTAAT
50955 GAAACCCTAAT
1 -AAACCCTAAT
**
50966 AAACCCTAGG
1 AAACCCTAAT
*
50976 AAACCCTAGT
1 AAACCCTAAT
*
50986 AAACCCTTAT
1 AAACCCTAAT
*
50996 AAACCCTAGT
1 AAACCCTAAT
*
51006 AAACCATAAT
1 AAACCCTAAT
*
51016 AAACCCTAGT
1 AAACCCTAAT
*** *
51026 AAATTTTAGT
1 AAACCCTAAT
** *
51036 AAAAACTAGT
1 AAACCCTAAT
*
51046 AAGCCCTAA-
1 AAACCCTAAT
51055 AAACCCTAAT
1 AAACCCTAAT
*
51065 AAACCCTTAT
1 AAACCCTAAT
*
51075 AAACCCTAGT
1 AAACCCTAAT
*
51085 AAACCCT-AG
1 AAACCCTAAT
*
51094 AAACCCTAGT
1 AAACCCTAAT
**
51104 AAACCCTTGT
1 AAACCCTAAT
** **
51114 AAATACTTGT
1 AAACCCTAAT
*
51124 AAACCCTAGT
1 AAACCCTAAT
*
51134 AAACCCTTAT
1 AAACCCTAAT
* * *
51144 AAATCCTTAC
1 AAACCCTAAT
51154 AAACCCTAAT
1 AAACCCTAAT
*
51164 AAACCCTAGT
1 AAACCCTAAT
**
51174 AAACCCTAGC
1 AAACCCTAAT
*
51184 AAACCTTAAT
1 AAACCCTAAT
*
51194 AAACCCTAGT
1 AAACCCTAAT
**
51204 AAACCCTAGC
1 AAACCCTAAT
51214 AAACCCTAAT
1 AAACCCTAAT
*
51224 AAACCCTTAT
1 AAACCCTAAT
*
51234 -AACCCTTTAT
1 AAACCC-TAAT
*
51244 AAACCCTAGT
1 AAACCCTAAT
*
51254 AAACCCTAGT
1 AAACCCTAAT
51264 AAACCC-ATAT
1 AAACCCTA-AT
*
51274 AAACCCTAAC
1 AAACCCTAAT
* *
51284 AAACCTTAGT
1 AAACCCTAAT
*
51294 AAACCCTAAC
1 AAACCCTAAT
*
51304 AAACCCTAGT
1 AAACCCTAAT
*
51314 AAATCCTAAT
1 AAACCCTAAT
**
51324 AAACCCTAGG
1 AAACCCTAAT
51334 AAACCCTAAACCTT
1 AAACCCT-AA---T
* *
51348 AAACTCTAAC
1 AAACCCTAAT
*
51358 AAACCTTAAT
1 AAACCCTAAT
*
51368 AAACCCTTAT
1 AAACCCTAAT
51378 AAACCCTAAT
1 AAACCCTAAT
* **
51388 AAAACCTTCT
1 AAACCCTAAT
* *
51398 AAACCTTTAT
1 AAACCCTAAT
**
51408 AAACCCTAGC
1 AAACCCTAAT
* *
51418 AAACTCTTAT
1 AAACCCTAAT
*
51428 AAACCCTTAT
1 AAACCCTAAT
**
51438 AAACCCTAGC
1 AAACCCTAAT
*
51448 AAACCCTTAT
1 AAACCCTAAT
**
51458 AAACCCTAGC
1 AAACCCTAAT
**
51468 AAACCCTAGC
1 AAACCCTAAT
*
51478 AAACCCTAAG
1 AAACCCTAAT
51488 AAACCCTAGA-
1 AAACCCTA-AT
*
51498 AAACCCTAGT
1 AAACCCTAAT
51508 AAACCCTAAT
1 AAACCCTAAT
**
51518 AAACCCTTGT
1 AAACCCTAAT
51528 AAACCCTAAT
1 AAACCCTAAT
* * *
51538 AAATCTTAGT
1 AAACCCTAAT
*** *
51548 AAATTTTAGT
1 AAACCCTAAT
** *
51558 AAAAACTAGT
1 AAACCCTAAT
*
51568 AAACCCTTAT
1 AAACCCTAAT
* *
51578 AAACCTTAGT
1 AAACCCTAAT
*
51588 AAACCCTTAT
1 AAACCCTAAT
*
51598 AAACCTTAAT
1 AAACCCTAAT
51608 AAA-CCT-AT
1 AAACCCTAAT
*
51616 AAAACCCTACT
1 -AAACCCTAAT
*
51627 AAACCCTTAT
1 AAACCCTAAT
** **
51637 AAATGCTTGT
1 AAACCCTAAT
51647 -AACCCTAAT
1 AAACCCTAAT
*
51656 AAACCCTAGT
1 AAACCCTAAT
*
51666 AAAAACC-AAGT
1 -AAACCCTAA-T
**
51677 AAACCCTTGT
1 AAACCCTAAT
***
51687 AAACCCTTGC
1 AAACCCTAAT
* *
51697 AAACCCTTAC
1 AAACCCTAAT
* **
51707 AAATCCTAGC
1 AAACCCTAAT
51717 AAACCCTAGA-
1 AAACCCTA-AT
* *
51727 AAACTCTAAA
1 AAACCCTAAT
*
51737 AAACCCTTAT
1 AAACCCTAAT
*
51747 AAACCCTAGT
1 AAACCCTAAT
*
51757 AAACCCTTAT
1 AAACCCTAAT
* *
51767 AAACCTTAGT
1 AAACCCTAAT
*
51777 AAACCCTTAT
1 AAACCCTAAT
** *
51787 AAATACTTAT
1 AAACCCTAAT
51797 AAACCCTAAT
1 AAACCCTAAT
*
51807 AAACCCTAGT
1 AAACCCTAAT
* *
51817 AACCCCTAGT
1 AAACCCTAAT
* *
51827 AAATCCTTAT
1 AAACCCTAAT
* *
51837 AAACCATAGT
1 AAACCCTAAT
*
51847 AAA-CCTGAGT
1 AAACCCT-AAT
*
51857 AAACCCTTAT
1 AAACCCTAAT
** *
51867 AAAATCTAGT
1 AAACCCTAAT
* **
51877 TAACCCTAGC
1 AAACCCTAAT
**
51887 AAACCCTTGT
1 AAACCCTAAT
* *
51897 AAACCTTAAC
1 AAACCCTAAT
*
51907 AAACCCTAGT
1 AAACCCTAAT
* *
51917 AAAACCTAAC
1 AAACCCTAAT
* * *
51927 AAACCATTAC
1 AAACCCTAAT
51937 AAACCCTAGA-
1 AAACCCTA-AT
*
51947 AAACCCTTAT
1 AAACCCTAAT
* **
51957 AAACCTTTGT
1 AAACCCTAAT
*
51967 AAACCCTAGT
1 AAACCCTAAT
*
51977 AAACCCTTAT
1 AAACCCTAAT
* *
51987 AAACCCTTAC
1 AAACCCTAAT
* *
51997 AAACCTTAGT
1 AAACCCTAAT
**
52007 AAACCCTTGT
1 AAACCCTAAT
*
52017 AAACCCTATT
1 AAACCCTAAT
* *
52027 AAATCCTAGT
1 AAACCCTAAT
**
52037 AAACCCTAGC
1 AAACCCTAAT
*
52047 AAACCCTAGT
1 AAACCCTAAT
* *
52057 AAATCCTAGT
1 AAACCCTAAT
**
52067 AAACCCTAGC
1 AAACCCTAAT
*
52077 AAATCCTAGA-
1 AAACCCTA-AT
52087 AAACCCTAAT
1 AAACCCTAAT
*
52097 AAACCCTAGT
1 AAACCCTAAT
* * *
52107 AAATCATAGT
1 AAACCCTAAT
*
52117 AAACCATAAT
1 AAACCCTAAT
*
52127 AAACCCTAGT
1 AAACCCTAAT
* * *
52137 CAACACTTAT
1 AAACCCTAAT
* *
52147 AAAGCCTTAT
1 AAACCCTAAT
* **
52157 AAATCCTAGC
1 AAACCCTAAT
* *
52167 AAACACTAAC
1 AAACCCTAAT
* **
52177 AAACCTTAGC
1 AAACCCTAAT
** *
52187 AAACTATTAT
1 AAACCCTAAT
*
52197 AAACCCTAAC
1 AAACCCTAAT
**
52207 AAACCCTAGC
1 AAACCCTAAT
* * *
52217 AAATCTTAGT
1 AAACCCTAAT
*
52227 AAACCCTAAC
1 AAACCCTAAT
**
52237 AAACCCTAGG
1 AAACCCTAAT
* *
52247 AAACCCAAAG
1 AAACCCTAAT
* *
52257 AAACCCTTAC
1 AAACCCTAAT
**
52267 AAACCCTAGC
1 AAACCCTAAT
*
52277 AAATCCTAAT
1 AAACCCTAAT
52287 AAACCCT-AT
1 AAACCCTAAT
* *
52296 CAAATCCTAAA
1 -AAACCCTAAT
*
52307 AAACCCTAGT
1 AAACCCTAAT
*
52317 AAATCCTAAT
1 AAACCCTAAT
*
52327 AAACCCTAGT
1 AAACCCTAAT
*
52337 AAATCCTAAT
1 AAACCCTAAT
* **
52347 AAACCCCAGC
1 AAACCCTAAT
*
52357 AAATCCTAGA-
1 AAACCCTA-AT
* *
52367 AAACCCCACT
1 AAACCCTAAT
*
52377 AAACCCTAGT
1 AAACCCTAAT
* *
52387 AAACACTAGT
1 AAACCCTAAT
* **
52397 AAATCCTTGT
1 AAACCCTAAT
*
52407 AAACCCTATT
1 AAACCCTAAT
52417 AAACCCTAAT
1 AAACCCTAAT
*
52427 AAACCCTAGT
1 AAACCCTAAT
*
52437 AAACCCTTAT
1 AAACCCTAAT
* *
52447 GAACCCTAGT
1 AAACCCTAAT
**
52457 AGTCCCTTAA-
1 AAACCC-TAAT
*
52467 AAACCCTTAT
1 AAACCCTAAT
*
52477 AAACCCTAGT
1 AAACCCTAAT
**
52487 AAACCCTTTT
1 AAACCCTAAT
*
52497 AAACCTTAAT
1 AAACCCTAAT
*
52507 AAACCCTAGT
1 AAACCCTAAT
**
52517 AAACCCTTCT
1 AAACCCTAAT
52527 AAACCCT-AT
1 AAACCCTAAT
*
52536 TAACCCTAAT
1 AAACCCTAAT
*
52546 AAACCCTTAT
1 AAACCCTAAT
* *
52556 AAA-ACTACT
1 AAACCCTAAT
*
52565 AAACCCTAGT
1 AAACCCTAAT
* *
52575 GAACCCTTAT
1 AAACCCTAAT
* **
52585 AAATCCTTGT
1 AAACCCTAAT
* **
52595 AAACCTTGGT
1 AAACCCTAAT
*
52605 AAATCCTAAT
1 AAACCCTAAT
52615 AAACCCT-AT
1 AAACCCTAAT
* *
52624 CAAATCCTAAA
1 -AAACCCTAAT
*
52635 AAACCCTAGT
1 AAACCCTAAT
* *
52645 GAATCCTAAT
1 AAACCCTAAT
*
52655 AAACCCTAGT
1 AAACCCTAAT
*
52665 AAATCCTAAT
1 AAACCCTAAT
* **
52675 AAACCCCAGC
1 AAACCCTAAT
*
52685 AAATCCTAGA-
1 AAACCCTA-AT
* *
52695 AAACCCCACT
1 AAACCCTAAT
*
52705 AAACCCTAGT
1 AAACCCTAAT
* *
52715 AAACACTAGT
1 AAACCCTAAT
* **
52725 AAATCCTTGT
1 AAACCCTAAT
* *
52735 AAATCCTATT
1 AAACCCTAAT
52745 AAACCCTAAT
1 AAACCCTAAT
*
52755 AAACCCTAGT
1 AAACCCTAAT
*
52765 AAACCCTTAT
1 AAACCCTAAT
* *
52775 GAACCCTAGT
1 AAACCCTAAT
**
52785 AGTCCCTTAA-
1 AAACCC-TAAT
*
52795 AAACCCTTAT
1 AAACCCTAAT
*
52805 AAACCCTAGT
1 AAACCCTAAT
**
52815 AAACCCTTTT
1 AAACCCTAAT
*
52825 AAACCTTAAT
1 AAACCCTAAT
*
52835 AAACCCTAGT
1 AAACCCTAAT
**
52845 AAACCCTTCT
1 AAACCCTAAT
52855 AAACCCT-AT
1 AAACCCTAAT
*
52864 TAACCCTAAT
1 AAACCCTAAT
*
52874 AAACCCTTAT
1 AAACCCTAAT
*
52884 AAA-ACTAAT
1 AAACCCTAAT
*
52893 AAACCCTAGT
1 AAACCCTAAT
* *
52903 GAACCCTTAT
1 AAACCCTAAT
* **
52913 AAATCCTTGT
1 AAACCCTAAT
* *
52923 AAACCTTAGT
1 AAACCCTAAT
* * *
52933 AAATCTTAGT
1 AAACCCTAAT
* *
52943 AAACCTTAGT
1 AAACCCTAAT
52953 AAACCCTAAT
1 AAACCCTAAT
*
52963 AATCCCT-AT
1 AAACCCTAAT
52972 -AACCC-AAGT
1 AAACCCTAA-T
* **
52981 AATCTTTAAT
1 AAACCCTAAT
* *
52991 AAATCCTAGT
1 AAACCCTAAT
**
53001 AAACCCTTGT
1 AAACCCTAAT
* *
53011 ATACCCTTAT
1 AAACCCTAAT
* *
53021 AAATCCTAGT
1 AAACCCTAAT
*
53031 AAACCCTTAT
1 AAACCCTAAT
*
53041 AAACCCTAGT
1 AAACCCTAAT
*
53051 ACACCCTAAT
1 AAACCCTAAT
* *
53061 ATACCCTAGT
1 AAACCCTAAT
53071 AAACCCTAAT
1 AAACCCTAAT
*
53081 AAACCCTAGT
1 AAACCCTAAT
* ** *
53091 TAACATTTAT
1 AAACCCTAAT
*
53101 AAACCCTTAT
1 AAACCCTAAT
53111 AAACCCTAAT
1 AAACCCTAAT
53121 AAACCCTAAT
1 AAACCCTAAT
* * *
53131 ACACCTTAGT
1 AAACCCTAAT
53141 AAACCCT--T
1 AAACCCTAAT
*
53149 GAACACCCTAGT
1 -AA-ACCCTAAT
* *
53161 ACACCCTAGT
1 AAACCCTAAT
** *
53171 ACGCCCTAGT
1 AAACCCTAAT
53181 AAACCCTAAT
1 AAACCCTAAT
*
53191 AAACCCTATT
1 AAACCCTAAT
*
53201 AAATCCTAAT
1 AAACCCTAAT
**
53211 AAACCCTTGT
1 AAACCCTAAT
* **
53221 AGACCCTTGT
1 AAACCCTAAT
*** *
53231 AAATATTAGT
1 AAACCCTAAT
53241 AAACCCTAAT
1 AAACCCTAAT
*
53251 AAACCCTAGT
1 AAACCCTAAT
* *
53261 AAATCTTAAT
1 AAACCCTAAT
53271 AAACCCTAAT
1 AAACCCTAAT
*
53281 AAACCCTTAT
1 AAACCCTAAT
*
53291 AAACCCTAGT
1 AAACCCTAAT
*** *
53301 AAATTATTAT
1 AAACCCTAAT
53311 AAACCCTAAT
1 AAACCCTAAT
* * *
53321 AAATCATAGT
1 AAACCCTAAT
53331 AAA-CCTAAGT
1 AAACCCTAA-T
*
53341 AAACCCTTAT
1 AAACCCTAAT
* *
53351 AAATCCTAGT
1 AAACCCTAAT
53361 AAACCCTAAT
1 AAACCCTAAT
* *
53371 AAACTCTAGT
1 AAACCCTAAT
53381 AAACCCTAAT
1 AAACCCTAAT
* *
53391 ATACCCTATT
1 AAACCCTAAT
* * *
53401 ACACTCTAGT
1 AAACCCTAAT
* *
53411 AAAGCCTAGT
1 AAACCCTAAT
* *
53421 AAACCATAGT
1 AAACCCTAAT
53431 AAACCCTAAT
1 AAACCCTAAT
* *
53441 AAATCCTAGT
1 AAACCCTAAT
*
53451 AAACCCTAGT
1 AAACCCTAAT
53461 AAACCCTAA
1 AAACCCTAA
53470 CCCAAAAAAA
Statistics
Matches: 3070, Mismatches: 871, Indels: 214
0.74 0.21 0.05
Matches are distributed among these distances:
5 2 0.00
6 3 0.00
7 7 0.00
8 12 0.00
9 170 0.06
10 2789 0.91
11 77 0.03
12 2 0.00
13 2 0.00
14 6 0.00
ACGTcount: A:0.43, C:0.29, G:0.06, T:0.23
Consensus pattern (10 bp):
AAACCCTAAT
Found at i:49446 original size:30 final size:30
Alignment explanation
Indices: 49412--53469 Score: 2093
Period size: 30 Copynumber: 136.0 Consensus size: 30
49402 AAACCTTTAC
* *
49412 AAACCCTAGCAAATCCTAATAAACCCTAAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* *
49442 AAACCCTCGTAAA-CC---T-AACCCTTAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
** *
49467 AAACCCTAAG-AAACCCTAGCAAACCCTAGT
1 AAACCCT-AGTAAACCCTAATAAACCCTAAT
* * *
49497 AAACTCTTA-TAAACCCTAACAAACCCTAGT
1 AAAC-CCTAGTAAACCCTAATAAACCCTAAT
** ** * *
49527 AAACCCTAAAAACT-ATAACAAACCCTAAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* ** *
49556 AAACCCTAGTAAACCCTCATAAAAACTAGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * *
49586 AAACCTTAGTAAATCCTTATAAACCCTAGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * *
49616 AAACCTTTA-TAAACCCAAATAAACCCTCAT
1 AAACC-CTAGTAAACCCTAATAAACCCTAAT
* * * * **
49646 AAACCCTAGGAAACCCTAAAAAAACTTAGC
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* ** *
49676 AAACCCTTA-TAAACCCTAGTAATTCCTAGT
1 AAACCC-TAGTAAACCCTAATAAACCCTAAT
* * * *
49706 AAATCATAGTAAACTCTTATAAACCCTAGA-
1 AAACCCTAGTAAACCCTAATAAACCCTA-AT
*
49736 AAACCCTAGCAAACCCTAGA-AAA-CCT-AT
1 AAACCCTAGTAAACCCTA-ATAAACCCTAAT
* * ** * *
49764 CAAATCCTAGAAAACCCTAGGAAATCCTACT
1 -AAACCCTAGTAAACCCTAATAAACCCTAAT
* * *
49795 AAACCCTAGAAAAACCCTAGA-AAATCCTACT
1 AAACCCTAG-TAAACCCTA-ATAAACCCTAAT
* ** **
49826 AAACCCCAAAAAAACCCTAGCAAACCCTAAT
1 AAA-CCCTAGTAAACCCTAATAAACCCTAAT
* ** * **
49857 AAACCCTTGTAAACCCTTGTAAACCTTTGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * **
49887 AAACCCTCGTAAAACCTAGGAAAACTTAGGAAAACCTAGC
1 AAACCCTAGTAAACCCT-----AA--T---AAACCCTAAT
* * ** *
49927 AAACCCTTGTAAATCCTAGCAAACCCTAAC
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * **
49957 AAACCCTAGTAAACCCTTACAAACCCTAGC
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * *
49987 AAACCCAAGTAAACCCTAA-GAACCTCTAAC
1 AAACCCTAGTAAACCCTAATAAACC-CTAAT
* * *
50017 AAACCCTAGCAAACCCTAAGAAACCCTAAC
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * *
50047 AAACCCTAGTAAACCGTAAAAAACCCTAGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * *
50077 AAACTCTAATAAACCCTAACAAACCCTATT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* *** *
50107 AAACTCCTATAACCCCTAA-AAACCCTAAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* ** ** **
50136 AAACCCTAGCAAACCCTAGCAAACTTTAGG
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
** * * * **
50166 AAAAACTAGCAAATCCTAAGAAACCCTAGC
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* *** *
50196 AAACTCTAGTAAACCCCTTTAAACCCTTAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* *
50226 AAACCCTAGTAAACCCTTATAAACCTTAA-
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * *
50255 CAACCCTAGTAAACCCTTATAAACCTTAGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * **
50285 AAATCCTAGTAAACCCTTATAAACCTTAGC
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * *
50315 AAACCCTTGTAAACCCTAATAACCCCTAGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* *
50345 AAACCTTTA-TAAATCC---TAAACCCTAAT
1 AAACC-CTAGTAAACCCTAATAAACCCTAAT
* * ** *
50372 AAATCCTAGTAAACCCTAGTAAATACTTAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * *
50402 AAACCCTTGTAAACCCTAGTAAATCCTAGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* *
50432 AAACCCTTA-TAAACCCTAGTAAACCCT-GT
1 AAACCC-TAGTAAACCCTAATAAACCCTAAT
* * **
50461 AAACCCTAGTAACCCCTTATAAACCCTTTT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* ** *
50491 AAA-CCTAACTAAACCCTTTTAAACCCTTAT
1 AAACCCT-AGTAAACCCTAATAAACCCTAAT
* * * *
50521 AAA-CCTAGCAAATCCTAACAAACCCTAAC
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
** *
50550 AAACCCTACCAAACCCTTATAAA-CCTCAAT
1 AAACCCTAGTAAACCCTAATAAACCCT-AAT
* * *
50580 AAACCCTTA-TAAACACTTATAAACCCTAGT
1 AAACCC-TAGTAAACCCTAATAAACCCTAAT
* * *
50610 AAACCCTAGTAAACCTTATTAAACCCTAGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * *
50640 AAACCCTTA-TAAACTCTTATAAAACATAAT
1 AAACCC-TAGTAAACCCTAATAAACCCTAAT
* * *
50670 AAACCCTAGCAAA-CCAAAGTAAACCATAAT
1 AAACCCTAGTAAACCCTAA-TAAACCCTAAT
* *
50700 AAACCCATA-TAAACCCTTATAATCCCTAAT
1 AAACCC-TAGTAAACCCTAATAAACCCTAAT
* * *
50730 AAACCCTAATAAATCCTAGTAAACCCT-AT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * * **
50759 -TATCCTAGCAAACCCTAGT-AACCCTAGC
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* *
50787 AAACCCTAGCAAACCC-AAGTAAACCCCT-GT
1 AAACCCTAGTAAACCCTAA-TAAA-CCCTAAT
** **
50817 AAACCCTTA-TAAACCCTAGCAAACCCTAGC
1 AAACCC-TAGTAAACCCTAATAAACCCTAAT
** *
50847 AAACCCTTA-TAGCCCCTAA-AAACCCTAGT
1 AAACCC-TAGTAAACCCTAATAAACCCTAAT
* *
50876 AAACCCTTA-AAAACCCTAGA-AAACCCTAAC
1 AAACCC-TAGTAAACCCTA-ATAAACCCTAAT
* *
50906 AAACCCTAAG-AAACCCTAACAAACCCTAAC
1 AAACCCT-AGTAAACCCTAATAAACCCTAAT
** **
50936 AAACCCTAACAAACCCTATGAAACCCTAAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * *
50966 AAACCCTAGGAAACCCTAGTAAACCCTTAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* *
50996 AAACCCTAGTAAACCATAATAAACCCTAGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
*** ** * *
51026 AAATTTTAGTAAAAACTAGTAAGCCCTAA-
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * *
51055 AAACCCTAATAAACCCTTATAAACCCTAGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* **
51085 AAACCCTAG-AAACCCTAGTAAACCCTTGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
** * * *
51114 AAATACTTGTAAACCCTAGTAAACCCTTAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * *
51144 AAATCCTTA-CAAACCCTAATAAACCCTAGT
1 AAA-CCCTAGTAAACCCTAATAAACCCTAAT
* * *
51174 AAACCCTAGCAAACCTTAATAAACCCTAGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* *
51204 AAACCCTAGCAAACCCTAATAAACCCTTAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* *
51234 -AACCCTTTA-TAAACCCTAGTAAACCCTAGT
1 AAACCC--TAGTAAACCCTAATAAACCCTAAT
* * *
51264 AAACCCATA-TAAACCCTAACAAACCTTAGT
1 AAACCC-TAGTAAACCCTAATAAACCCTAAT
** * *
51294 AAACCCTAACAAACCCTAGTAAATCCTAAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
*
51324 AAACCCTAGGAAACCC---TAAA-CCT--T
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* ** * *
51348 AAACTCTAACAAACCTTAATAAACCCTTAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * ** * *
51378 AAACCCTAATAAAACCTTCTAAACCTTTAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * *
51408 AAACCCTAGCAAACTCTTATAAACCCTTAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * **
51438 AAACCCTAGCAAACCCTTATAAACCCTAGC
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* *
51468 AAACCCTAGCAAACCCTAAGAAACCCTAGA-
1 AAACCCTAGTAAACCCTAATAAACCCTA-AT
**
51498 AAACCCTAGTAAACCCTAATAAACCCTTGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * * *** *
51528 AAACCCTAATAAATCTTAGTAAATTTTAGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
** * * *
51558 AAAAACTAGTAAACCCTTATAAACCTTAGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
*
51588 AAACCCTTA-TAAACCTTAATAAA-CCT-AT
1 AAACCC-TAGTAAACCCTAATAAACCCTAAT
* * ** **
51616 AAAACCCTACTAAACCCTTATAAATGCTTGT
1 -AAACCCTAGTAAACCCTAATAAACCCTAAT
* * *
51647 -AACCCTAATAAACCCTAGTAAAAACC-AAGT
1 AAACCCTAGTAAACCCTAAT-AAACCCTAA-T
* *** * *
51677 AAACCCTTGTAAACCCTTGCAAACCCTTAC
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * *
51707 AAATCCTAGCAAACCCTAGA-AAACTCTAAA
1 AAACCCTAGTAAACCCTA-ATAAACCCTAAT
* *
51737 AAACCCTTA-TAAACCCTAGTAAACCCTTAT
1 AAACCC-TAGTAAACCCTAATAAACCCTAAT
* * ** *
51767 AAACCTTAGTAAACCCTTATAAATACTTAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * *
51797 AAACCCTAATAAACCCTAGTAACCCCTAGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * *
51827 AAATCCTTA-TAAACCATAGTAAA-CCTGAGT
1 AAA-CCCTAGTAAACCCTAATAAACCCT-AAT
** * * **
51857 AAACCCTTA-TAAAATCTAGTTAACCCTAGC
1 AAACCC-TAGTAAACCCTAATAAACCCTAAT
* * * *
51887 AAACCCTTGTAAACCTTAACAAACCCTAGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* ** * * *
51917 AAAACCTAACAAACCATTACAAACCCTAGA-
1 AAACCCTAGTAAACCCTAATAAACCCTA-AT
* ** *
51947 AAACCCTTA-TAAACCTTTGTAAACCCTAGT
1 AAACCC-TAGTAAACCCTAATAAACCCTAAT
* * * *
51977 AAACCCTTA-TAAACCCTTACAAACCTTAGT
1 AAACCC-TAGTAAACCCTAATAAACCCTAAT
* * * *
52007 AAACCCTTGTAAACCCTATTAAATCCTAGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * *
52037 AAACCCTAGCAAACCCTAGTAAATCCTAGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* *
52067 AAACCCTAGCAAATCCTAGA-AAACCCTAAT
1 AAACCCTAGTAAACCCTA-ATAAACCCTAAT
* * * *
52097 AAACCCTAGTAAATCATAGTAAACCATAAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * * *
52127 AAACCCTAGTCAACACTTATAAAGCCTTAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * * * **
52157 AAATCCTAGCAAACACTAACAAACCTTAGC
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
*
52187 AAA--CTA-T------T-ATAAACCCTAAC
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * * *
52207 AAACCCTAGCAAATCTTAGTAAACCCTAAC
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * * *
52237 AAACCCTAGGAAACCCAAAGAAACCCTTAC
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * **
52267 AAACCCTAGCAAATCCTAATAAACCCTATC
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* ** * *
52297 AAATCCTAAAAAACCCTAGTAAATCCTAAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * **
52327 AAACCCTAGTAAATCCTAATAAACCCCAGC
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * * *
52357 AAATCCTAGAAAACCCCACTAAACCCTAGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * ** *
52387 AAACACTAGTAAATCCTTGTAAACCCTATT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * *
52417 AAACCCTAATAAACCCTAGTAAACCCTTAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* ** *
52447 GAACCCTAGTAGTCCCTTAA-AAACCCTTAT
1 AAACCCTAGTAAACCC-TAATAAACCCTAAT
** *
52477 AAACCCTAGTAAACCCTTTTAAACCTTAAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
**
52507 AAACCCTAGTAAACCCTTCTAAACCCT-AT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * * *
52536 TAACCCTAATAAACCCTTATAAA-ACTACT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * **
52565 AAACCCTAGTGAACCCTTATAAATCCTTGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * *
52595 AAACCTTGGTAAATCCTAATAAACCCT-AT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* ** * * *
52624 CAAATCCTAAAAAACCCTAGTGAATCCTAAT
1 -AAACCCTAGTAAACCCTAATAAACCCTAAT
* * **
52655 AAACCCTAGTAAATCCTAATAAACCCCAGC
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * * *
52685 AAATCCTAGAAAACCCCACTAAACCCTAGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * ** * *
52715 AAACACTAGTAAATCCTTGTAAATCCTATT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * *
52745 AAACCCTAATAAACCCTAGTAAACCCTTAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* ** *
52775 GAACCCTAGTAGTCCCTTAA-AAACCCTTAT
1 AAACCCTAGTAAACCC-TAATAAACCCTAAT
** *
52805 AAACCCTAGTAAACCCTTTTAAACCTTAAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
**
52835 AAACCCTAGTAAACCCTTCTAAACCCT-AT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * *
52864 TAACCCTAATAAACCCTTATAAA-ACTAAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * **
52893 AAACCCTAGTGAACCCTTATAAATCCTTGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * * * *
52923 AAACCTTAGTAAATCTTAGTAAACCTTAGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * *
52953 AAACCCTAATAATCCCT-ATAACCCAAGTAATCTTTAAT
1 AAACCCTAGTAAACCCTAATAAACC-------C--TAAT
* ** * *
52991 AAATCCTAGTAAACCCTTGTATACCCTTAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * *
53021 AAATCCTAGTAAACCCTTATAAACCCTAGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * *
53051 ACACCCTAATATACCCTAGTAAACCCTAAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* ** * *
53081 AAACCCTAGTTAACATTTATAAACCCTTAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * *
53111 AAACCCTAATAAACCCTAATACACCTTAGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * *
53141 AAACCCTTG-AACACCCTAGTACACCCTAGT
1 AAACCCTAGTAA-ACCCTAATAAACCCTAAT
** *
53171 ACGCCCTAGTAAACCCTAATAAACCCTATT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * ** * **
53201 AAATCCTAATAAACCCTTGTAGACCCTTGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
*** *
53231 AAATATTAGTAAACCCTAATAAACCCTAGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * *
53261 AAATCTTAATAAACCCTAATAAACCCTTAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
*** *
53291 AAACCCTAGTAAATTATTATAAACCCTAAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * *
53321 AAATCATAGTAAA-CCTAAGTAAACCCTTAT
1 AAACCCTAGTAAACCCTAA-TAAACCCTAAT
* * *
53351 AAATCCTAGTAAACCCTAATAAACTCTAGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * * * * *
53381 AAACCCTAATATACCCTATTACACTCTAGT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* * *
53411 AAAGCCTAGTAAACCATAGTAAACCCTAAT
1 AAACCCTAGTAAACCCTAATAAACCCTAAT
* *
53441 AAATCCTAGTAAACCCTAGTAAACCCTAA
1 AAACCCTAGTAAACCCTAATAAACCCTAA
53470 CCCAAAAAAA
Statistics
Matches: 3112, Mismatches: 770, Indels: 292
0.75 0.18 0.07
Matches are distributed among these distances:
20 12 0.00
21 1 0.00
22 3 0.00
24 13 0.00
25 18 0.01
26 9 0.00
27 34 0.01
28 30 0.01
29 406 0.13
30 2410 0.77
31 127 0.04
32 5 0.00
35 1 0.00
37 1 0.00
38 17 0.01
39 4 0.00
40 21 0.01
ACGTcount: A:0.43, C:0.29, G:0.06, T:0.23
Consensus pattern (30 bp):
AAACCCTAGTAAACCCTAATAAACCCTAAT
Found at i:49551 original size:39 final size:40
Alignment explanation
Indices: 49467--49572 Score: 142
Period size: 39 Copynumber: 2.7 Consensus size: 40
49457 TAACCCTTAT
* * * * * *
49467 AAACCCTAAGAAACCCTAGCAAACCCTAGTAAACTCTTAT
1 AAACCCTAACAAACCCTAGTAAACCCTAGAAAACTATAAC
49507 AAACCCTAACAAACCCTAGTAAACCCTA-AAAACTATAAC
1 AAACCCTAACAAACCCTAGTAAACCCTAGAAAACTATAAC
*
49546 AAACCCTAATAAACCCTAGTAAACCCT
1 AAACCCTAACAAACCCTAGTAAACCCT
49573 CATAAAAACT
Statistics
Matches: 59, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
39 33 0.56
40 26 0.44
ACGTcount: A:0.46, C:0.31, G:0.05, T:0.18
Consensus pattern (40 bp):
AAACCCTAACAAACCCTAGTAAACCCTAGAAAACTATAAC
Found at i:56948 original size:18 final size:17
Alignment explanation
Indices: 56916--56949 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
56906 AGTTGAAGAG
*
56916 TAAAATAATATTAATAA
1 TAAAACAATATTAATAA
56933 TAAAACAATGATTAATA
1 TAAAACAAT-ATTAATA
56950 TGTGTGGGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.32
Consensus pattern (17 bp):
TAAAACAATATTAATAA
Found at i:57177 original size:21 final size:19
Alignment explanation
Indices: 57153--57333 Score: 146
Period size: 21 Copynumber: 8.8 Consensus size: 19
57143 CATATTCGCA
*
57153 TTGCGATAGTCCAAGTTCGCG
1 TTGCGATAGTCCAAATT--CG
**
57174 TTGCGATTTTCCAAATTCG
1 TTGCGATAGTCCAAATTCG
* *
57193 TTGCGATAGTTCAAGTTTGCG
1 TTGCGATAGTCCAA-ATT-CG
*
57214 TTGCGATTTATTCCAAATTCG
1 TTGCGA--TAGTCCAAATTCG
*
57235 TTGCGATAGTCCAAGTTCGCG
1 TTGCGATAGTCCAAATT--CG
* *
57256 TTGCGATTTATTACAAATTCG
1 TTGCGA--TAGTCCAAATTCG
*
57277 TTGCGATAGTCTCCAAGTTCG
1 TTGCGATAG--TCCAAATTCG
57298 TTGCGATAGTCTCCAAATTCG
1 TTGCGATAG--TCCAAATTCG
57319 TTGCGATAGTCCAAA
1 TTGCGATAGTCCAAA
57334 ATCGCAACGA
Statistics
Matches: 131, Mismatches: 19, Indels: 22
0.76 0.11 0.13
Matches are distributed among these distances:
19 30 0.23
20 2 0.02
21 83 0.63
22 2 0.02
23 14 0.11
ACGTcount: A:0.23, C:0.20, G:0.22, T:0.35
Consensus pattern (19 bp):
TTGCGATAGTCCAAATTCG
Found at i:57229 original size:42 final size:41
Alignment explanation
Indices: 57153--57332 Score: 251
Period size: 42 Copynumber: 4.3 Consensus size: 41
57143 CATATTCGCA
57153 TTGCGATAGTCCAAGTTCGCGTTGCGATT-TTCCAAATTCG
1 TTGCGATAGTCCAAGTTCGCGTTGCGATTATTCCAAATTCG
* *
57193 TTGCGATAGTTCAAGTTTGCGTTGCGATTTATTCCAAATTCG
1 TTGCGATAGTCCAAGTTCGCGTTGCGA-TTATTCCAAATTCG
*
57235 TTGCGATAGTCCAAGTTCGCGTTGCGATTTATTACAAATTCG
1 TTGCGATAGTCCAAGTTCGCGTTGCGA-TTATTCCAAATTCG
57277 TTGCGATAGTCTCCAAGTT--CGTTGCGA-TAGTCTCCAAATTCG
1 TTGCGATAG--TCCAAGTTCGCGTTGCGATTA-T-TCCAAATTCG
57319 TTGCGATAGTCCAA
1 TTGCGATAGTCCAA
57333 AATCGCAACG
Statistics
Matches: 128, Mismatches: 6, Indels: 12
0.88 0.04 0.08
Matches are distributed among these distances:
40 32 0.25
41 3 0.02
42 85 0.66
44 8 0.06
ACGTcount: A:0.22, C:0.21, G:0.22, T:0.36
Consensus pattern (41 bp):
TTGCGATAGTCCAAGTTCGCGTTGCGATTATTCCAAATTCG
Found at i:57321 original size:63 final size:62
Alignment explanation
Indices: 57153--57325 Score: 164
Period size: 63 Copynumber: 2.8 Consensus size: 62
57143 CATATTCGCA
* *
57153 TTGCGATAG-TCCAAGTTCGCGTTGCGAT-TTTCCAAATTCGTTGCGA-TAGTTCAAGTTTGCG
1 TTGCGATAGTTCCAAGTT--CGTTGCGATAGTTCCAAATTCGTTGCGATTAGTTCAAGATTGCG
* *
57214 TTGCGATTTA-TTCCAAATTCGTTGCGATAG-TCCAAGTTCGCGTTGCGATTTA-TTACAA-ATT
1 TTGCGA--TAGTTCCAAGTTCGTTGCGATAGTTCCAAATT--CGTTGCGA-TTAGTT-CAAGATT
57275 -CG
60 GCG
57277 TTGCGATAGTCTCCAAGTTCGTTGCGATAGTCTCCAAATTCGTTGCGAT
1 TTGCGATAGT-TCCAAGTTCGTTGCGATAGT-TCCAAATTCGTTGCGAT
57326 AGTCCAAAAT
Statistics
Matches: 93, Mismatches: 6, Indels: 25
0.75 0.05 0.20
Matches are distributed among these distances:
61 24 0.26
62 2 0.02
63 51 0.55
64 4 0.04
65 12 0.13
ACGTcount: A:0.21, C:0.20, G:0.22, T:0.36
Consensus pattern (62 bp):
TTGCGATAGTTCCAAGTTCGTTGCGATAGTTCCAAATTCGTTGCGATTAGTTCAAGATTGCG
Found at i:57881 original size:21 final size:21
Alignment explanation
Indices: 57851--57969 Score: 150
Period size: 21 Copynumber: 5.7 Consensus size: 21
57841 GATTCACCTG
*
57851 TCATCGTTCAAGAGGCCCCTC
1 TCATCATTCAAGAGGCCCCTC
*
57872 -CTATCATTCAAGAGACCCCTC
1 TC-ATCATTCAAGAGGCCCCTC
57893 TCATCATTCAAGAGGCCCCTC
1 TCATCATTCAAGAGGCCCCTC
*
57914 TCATCGTTCAAGAGGCCCCTC
1 TCATCATTCAAGAGGCCCCTC
**
57935 TCATTGTTCAAGAGGCCCCTC
1 TCATCATTCAAGAGGCCCCTC
* * *
57956 CCACCGTTCAAGAG
1 TCATCATTCAAGAG
57970 CCCGATTCAC
Statistics
Matches: 88, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
20 1 0.01
21 86 0.98
22 1 0.01
ACGTcount: A:0.23, C:0.37, G:0.17, T:0.24
Consensus pattern (21 bp):
TCATCATTCAAGAGGCCCCTC
Found at i:57929 original size:63 final size:63
Alignment explanation
Indices: 57851--57969 Score: 168
Period size: 63 Copynumber: 1.9 Consensus size: 63
57841 GATTCACCTG
* *
57851 TCATCGTTCAAGAGGCCCCTC-CTATCATTCAAGAGACCCCTCTCATCATTCAAGAGGCCCCTC
1 TCATCGTTCAAGAGGCCCCTCTC-ATCATTCAAGAGACCCCTCCCACCATTCAAGAGGCCCCTC
** * *
57914 TCATCGTTCAAGAGGCCCCTCTCATTGTTCAAGAGGCCCCTCCCACCGTTCAAGAG
1 TCATCGTTCAAGAGGCCCCTCTCATCATTCAAGAGACCCCTCCCACCATTCAAGAG
57970 CCCGATTCAC
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
63 48 0.98
64 1 0.02
ACGTcount: A:0.23, C:0.37, G:0.17, T:0.24
Consensus pattern (63 bp):
TCATCGTTCAAGAGGCCCCTCTCATCATTCAAGAGACCCCTCCCACCATTCAAGAGGCCCCTC
Found at i:59425 original size:29 final size:29
Alignment explanation
Indices: 59383--59500 Score: 191
Period size: 29 Copynumber: 4.1 Consensus size: 29
59373 CTTTCGCAAC
*
59383 GCGAAAGTCAAATTCGTGTTGTGATTGTT
1 GCGAAAGTCAAATTCGTGTTGCGATTGTT
59412 GCGAAAGTCAAATTCGTGTTGCGATTGTT
1 GCGAAAGTCAAATTCGTGTTGCGATTGTT
* *
59441 GTGAAAGTCAAATTCGTGTTGCGATTATT
1 GCGAAAGTCAAATTCGTGTTGCGATTGTT
* *
59470 GCAAAAGTCAAATTCGTGTTGCGATTTTT
1 GCGAAAGTCAAATTCGTGTTGCGATTGTT
59499 GC
1 GC
59501 CTTGCGAATT
Statistics
Matches: 83, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 83 1.00
ACGTcount: A:0.25, C:0.13, G:0.25, T:0.36
Consensus pattern (29 bp):
GCGAAAGTCAAATTCGTGTTGCGATTGTT
Found at i:59520 original size:20 final size:20
Alignment explanation
Indices: 59495--59537 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
59485 GTGTTGCGAT
*
59495 TTTTGCCTTGCGAATTTGAC
1 TTTTGCCTTGCAAATTTGAC
* *
59515 TTTTGCGTTGCAAATTTGTC
1 TTTTGCCTTGCAAATTTGAC
59535 TTT
1 TTT
59538 CACAACAATC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.14, C:0.16, G:0.19, T:0.51
Consensus pattern (20 bp):
TTTTGCCTTGCAAATTTGAC
Found at i:62149 original size:24 final size:24
Alignment explanation
Indices: 62098--62152 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
62088 AAAATCTGAG
**
62098 TATTGACCAAGATCAAAGTATGGG
1 TATTGACCAAGATCAAAGTATGAA
*
62122 TATTGACCAAGATCAAA-TTTCGAA
1 TATTGACCAAGATCAAAGTAT-GAA
62146 TATTGAC
1 TATTGAC
62153 TAGTACTCAC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
23 2 0.07
24 25 0.93
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.29
Consensus pattern (24 bp):
TATTGACCAAGATCAAAGTATGAA
Found at i:63087 original size:20 final size:20
Alignment explanation
Indices: 63062--63126 Score: 64
Period size: 20 Copynumber: 3.2 Consensus size: 20
63052 CAAAATATTT
63062 GTGTTGCAAAATTAAAATTC
1 GTGTTGCAAAATTAAAATTC
*
63082 GTGTTGC-GAATTCGAAAA-TC
1 GTGTTGCAAAATT--AAAATTC
*
63102 GAGTTGCGAAAA-TAAAATTC
1 GTGTTGC-AAAATTAAAATTC
63122 GTGTT
1 GTGTT
63127 ACGATTTAGA
Statistics
Matches: 36, Mismatches: 4, Indels: 10
0.72 0.08 0.20
Matches are distributed among these distances:
19 8 0.22
20 21 0.58
21 5 0.14
22 2 0.06
ACGTcount: A:0.35, C:0.11, G:0.22, T:0.32
Consensus pattern (20 bp):
GTGTTGCAAAATTAAAATTC
Found at i:63118 original size:40 final size:40
Alignment explanation
Indices: 63064--63141 Score: 113
Period size: 40 Copynumber: 1.9 Consensus size: 40
63054 AAATATTTGT
* *
63064 GTTGCAAAATTAAAATTCGTGTTGCGAATTCGAAAATCGA
1 GTTGCAAAATTAAAATTCGTGTTACGAATTAGAAAATCGA
*
63104 GTTGCGAAAA-TAAAATTCGTGTTACGATTTAGAAAATC
1 GTTGC-AAAATTAAAATTCGTGTTACGAATTAGAAAATC
63142 TTGTTACGAA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
40 30 0.88
41 4 0.12
ACGTcount: A:0.38, C:0.12, G:0.19, T:0.31
Consensus pattern (40 bp):
GTTGCAAAATTAAAATTCGTGTTACGAATTAGAAAATCGA
Found at i:63152 original size:40 final size:41
Alignment explanation
Indices: 63069--63153 Score: 109
Period size: 40 Copynumber: 2.1 Consensus size: 41
63059 TTTGTGTTGC
* * *
63069 AAAATTAAAATTCGTGTTGCGAATTCGAAAATCGAGTTGCG
1 AAAATTAAAATTCGTGTTACGAATTAGAAAATCGAGTTACG
* **
63110 AAAA-TAAAATTCGTGTTACGATTTAGAAAATCTTGTTACG
1 AAAATTAAAATTCGTGTTACGAATTAGAAAATCGAGTTACG
63150 AAAA
1 AAAA
63154 GGAAACTTGT
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
40 34 0.89
41 4 0.11
ACGTcount: A:0.41, C:0.11, G:0.18, T:0.31
Consensus pattern (41 bp):
AAAATTAAAATTCGTGTTACGAATTAGAAAATCGAGTTACG
Found at i:63201 original size:20 final size:20
Alignment explanation
Indices: 63176--63297 Score: 74
Period size: 20 Copynumber: 6.0 Consensus size: 20
63166 TATGAAAAAT
63176 AAATTCGCGTTGCGAATTTG
1 AAATTCGCGTTGCGAATTTG
63196 AAATTC-CATGTTGCGAATTTG
1 AAATTCGC--GTTGCGAATTTG
* * *
63217 -ACTTCTGTGTTGCG-ATTTAC
1 AAATTC-GCGTTGCGAATTT-G
* *
63237 AAATTCCCGTTGTG-ATTT-
1 AAATTCGCGTTGCGAATTTG
*
63255 ACATATTCGCGTTGCGATTTTGG
1 A-A-ATTCGCGTTGCGAATTT-G
* *
63278 AAAATCGCGTTGCAAATTTG
1 AAATTCGCGTTGCGAATTTG
63298 GAACCTGTGT
Statistics
Matches: 78, Mismatches: 13, Indels: 22
0.69 0.12 0.19
Matches are distributed among these distances:
18 1 0.01
19 6 0.08
20 36 0.46
21 33 0.42
22 1 0.01
23 1 0.01
ACGTcount: A:0.24, C:0.16, G:0.21, T:0.39
Consensus pattern (20 bp):
AAATTCGCGTTGCGAATTTG
Found at i:63287 original size:21 final size:21
Alignment explanation
Indices: 63261--63300 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
63251 ATTTACATAT
* *
63261 TCGCGTTGCGATTTTGGAAAA
1 TCGCGTTGCAAATTTGGAAAA
63282 TCGCGTTGCAAATTTGGAA
1 TCGCGTTGCAAATTTGGAA
63301 CCTGTGTTGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.33
Consensus pattern (21 bp):
TCGCGTTGCAAATTTGGAAAA
Found at i:67284 original size:21 final size:21
Alignment explanation
Indices: 67260--67318 Score: 64
Period size: 21 Copynumber: 2.8 Consensus size: 21
67250 TTCTATGTGG
67260 TCCTTCGGGATATATATGTAA
1 TCCTTCGGGATATATATGTAA
* * **
67281 TCCTTTGGAATATATATGTGG
1 TCCTTCGGGATATATATGTAA
* *
67302 TTCTTCGGGACATATAT
1 TCCTTCGGGATATATAT
67319 TTGGTCCTTT
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.25, C:0.14, G:0.20, T:0.41
Consensus pattern (21 bp):
TCCTTCGGGATATATATGTAA
Found at i:67317 original size:42 final size:42
Alignment explanation
Indices: 67253--67348 Score: 120
Period size: 42 Copynumber: 2.3 Consensus size: 42
67243 TCAATGGTTC
* *
67253 TATGTGGTCCTTCGGGATATATATGTAATCCTTTGGAATATA
1 TATGTGGTCCTTCGGGACATATATGTAATCCTTTGAAATATA
* * ** *
67295 TATGTGGTTCTTCGGGACATATATTTGGTCCTTTGAAATATG
1 TATGTGGTCCTTCGGGACATATATGTAATCCTTTGAAATATA
*
67337 TATGTGATCCTT
1 TATGTGGTCCTT
67349 AGGAGTGGTC
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.23, C:0.12, G:0.22, T:0.43
Consensus pattern (42 bp):
TATGTGGTCCTTCGGGACATATATGTAATCCTTTGAAATATA
Found at i:67379 original size:21 final size:22
Alignment explanation
Indices: 67353--67412 Score: 86
Period size: 23 Copynumber: 2.7 Consensus size: 22
67343 ATCCTTAGGA
* *
67353 GTGGTCATTCGGGACA-TCTAT
1 GTGGTCCTTCGGGACACTCTAC
67374 GTGGTCCTTCGGGACATCTCTAC
1 GTGGTCCTTCGGGACA-CTCTAC
67397 GTGGTCCTTCGGGACA
1 GTGGTCCTTCGGGACA
67413 AAATCTATGT
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
21 15 0.43
23 20 0.57
ACGTcount: A:0.15, C:0.25, G:0.30, T:0.30
Consensus pattern (22 bp):
GTGGTCCTTCGGGACACTCTAC
Found at i:69939 original size:32 final size:32
Alignment explanation
Indices: 69903--70024 Score: 106
Period size: 32 Copynumber: 3.8 Consensus size: 32
69893 CCTAAGGTAA
* **
69903 CCCTTGGGTAGGCTCTTAGGCCCCGAGATGTT
1 CCCTTGGGTAGGCTCTTAGGCCCCAAGATACT
* * *
69935 CCCTTGGGTAGGCTCTGAAGCCCCAATATACT
1 CCCTTGGGTAGGCTCTTAGGCCCCAAGATACT
*
69967 CCATTGGGTAGGCT-TTGAGGCCCCAA-AGTA-T
1 CCCTTGGGTAGGCTCTT-AGGCCCCAAGA-TACT
* * * *
69998 TCATTGGATAGGCTCTAAGGCCCCAAG
1 CCCTTGGGTAGGCTCTTAGGCCCCAAG
70025 GCATTCCCTT
Statistics
Matches: 74, Mismatches: 12, Indels: 8
0.79 0.13 0.09
Matches are distributed among these distances:
31 24 0.32
32 50 0.68
ACGTcount: A:0.20, C:0.27, G:0.27, T:0.25
Consensus pattern (32 bp):
CCCTTGGGTAGGCTCTTAGGCCCCAAGATACT
Found at i:75694 original size:2 final size:2
Alignment explanation
Indices: 75687--75741 Score: 110
Period size: 2 Copynumber: 27.5 Consensus size: 2
75677 GTAATTTAGC
75687 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
75729 CT CT CT CT CT CT C
1 CT CT CT CT CT CT C
75742 CCCCCTGCAA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 53 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
CT
Found at i:79272 original size:21 final size:21
Alignment explanation
Indices: 79243--79295 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
79233 ATTCTGACTA
79243 TCGCATTGCGATTTTCCAAAT
1 TCGCATTGCGATTTTCCAAAT
* *
79264 TCGCGTTGCGATTTTCCTAAT
1 TCGCATTGCGATTTTCCAAAT
*
79285 TCGCAATGCGA
1 TCGCATTGCGA
79296 ATACGTAAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.21, C:0.25, G:0.19, T:0.36
Consensus pattern (21 bp):
TCGCATTGCGATTTTCCAAAT
Found at i:79327 original size:20 final size:20
Alignment explanation
Indices: 79304--79390 Score: 86
Period size: 20 Copynumber: 4.3 Consensus size: 20
79294 GAATACGTAA
*
79304 ATCGCAACGCAAATCTGACT
1 ATCGCAACGCAATTCTGACT
* * *
79324 ATCGCAATGCGATTATGACT
1 ATCGCAACGCAATTCTGACT
79344 ATCGCAACG-AGATTCTGACT
1 ATCGCAACGCA-ATTCTGACT
** * *
79364 ATCGCAATACGATTCTAACT
1 ATCGCAACGCAATTCTGACT
79384 ATCGCAA
1 ATCGCAA
79391 TACTGAATTT
Statistics
Matches: 54, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
20 54 1.00
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.25
Consensus pattern (20 bp):
ATCGCAACGCAATTCTGACT
Found at i:79331 original size:40 final size:40
Alignment explanation
Indices: 79285--79371 Score: 106
Period size: 40 Copynumber: 2.2 Consensus size: 40
79275 TTTTCCTAAT
79285 TCGCAATGCGAATACGTA-AATCGCAACGCA-AATCTGACTA
1 TCGCAATGCGAATACG-ACAATCGCAACG-AGAATCTGACTA
* * * *
79325 TCGCAATGCGATTATGACTATCGCAACGAGATTCTGACTA
1 TCGCAATGCGAATACGACAATCGCAACGAGAATCTGACTA
79365 TCGCAAT
1 TCGCAAT
79372 ACGATTCTAA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
39 2 0.05
40 39 0.95
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.24
Consensus pattern (40 bp):
TCGCAATGCGAATACGACAATCGCAACGAGAATCTGACTA
Found at i:79377 original size:40 final size:40
Alignment explanation
Indices: 79304--79390 Score: 122
Period size: 40 Copynumber: 2.2 Consensus size: 40
79294 GAATACGTAA
* *
79304 ATCGCAACGCAAATCTGACTATCGCAATGCGATTATGACT
1 ATCGCAACGCAAATCTGACTATCGCAATACGATTATAACT
* *
79344 ATCGCAACG-AGATTCTGACTATCGCAATACGATTCTAACT
1 ATCGCAACGCA-AATCTGACTATCGCAATACGATTATAACT
79384 ATCGCAA
1 ATCGCAA
79391 TACTGAATTT
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
39 1 0.02
40 41 0.98
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.25
Consensus pattern (40 bp):
ATCGCAACGCAAATCTGACTATCGCAATACGATTATAACT
Found at i:79391 original size:20 final size:20
Alignment explanation
Indices: 79317--79393 Score: 102
Period size: 20 Copynumber: 3.9 Consensus size: 20
79307 GCAACGCAAA
*
79317 TCTGACTATCGCAATGCGAT
1 TCTGACTATCGCAATACGAT
* *
79337 TATGACTATCGCAACGA-GAT
1 TCTGACTATCGCAA-TACGAT
79357 TCTGACTATCGCAATACGAT
1 TCTGACTATCGCAATACGAT
*
79377 TCTAACTATCGCAATAC
1 TCTGACTATCGCAATAC
79394 TGAATTTCAA
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
19 1 0.02
20 48 0.98
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.29
Consensus pattern (20 bp):
TCTGACTATCGCAATACGAT
Found at i:80333 original size:35 final size:35
Alignment explanation
Indices: 80287--80360 Score: 148
Period size: 35 Copynumber: 2.1 Consensus size: 35
80277 TAGCTTACGG
80287 GGTTGGCAAATCTGAAACCTCTGATTCATGGACAT
1 GGTTGGCAAATCTGAAACCTCTGATTCATGGACAT
80322 GGTTGGCAAATCTGAAACCTCTGATTCATGGACAT
1 GGTTGGCAAATCTGAAACCTCTGATTCATGGACAT
80357 GGTT
1 GGTT
80361 TATGGGCATC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 39 1.00
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (35 bp):
GGTTGGCAAATCTGAAACCTCTGATTCATGGACAT
Found at i:81648 original size:20 final size:20
Alignment explanation
Indices: 81623--81698 Score: 107
Period size: 20 Copynumber: 3.8 Consensus size: 20
81613 GACATTCATT
81623 TGACTATCGCAACGCGGAAA
1 TGACTATCGCAACGCGGAAA
81643 TGACTATCGCAACGCGGAAA
1 TGACTATCGCAACGCGGAAA
* * *
81663 TAACTATCGCAATGCGAAAA
1 TGACTATCGCAACGCGGAAA
**
81683 TGAAAATCGCAACGCG
1 TGACTATCGCAACGCG
81699 AATTTAGTTT
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 49 1.00
ACGTcount: A:0.38, C:0.24, G:0.22, T:0.16
Consensus pattern (20 bp):
TGACTATCGCAACGCGGAAA
Found at i:81754 original size:34 final size:34
Alignment explanation
Indices: 81711--81806 Score: 149
Period size: 33 Copynumber: 2.9 Consensus size: 34
81701 TTTAGTTTCG
81711 CGTTGCGATTTTCATTTTCGCATTGCGATTCTCT
1 CGTTGCGATTTTCATTTTCGCATTGCGATTCTCT
81745 CGTTGCGATTTTCA-TTTCGCATTGCGATTCTCT
1 CGTTGCGATTTTCATTTTCGCATTGCGATTCTCT
** * *
81778 CGTTGCGATAGTCATTTCCGCGTTGCGAT
1 CGTTGCGATTTTCATTTTCGCATTGCGAT
81807 AGTCATTTCG
Statistics
Matches: 57, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
33 31 0.54
34 26 0.46
ACGTcount: A:0.12, C:0.24, G:0.21, T:0.43
Consensus pattern (34 bp):
CGTTGCGATTTTCATTTTCGCATTGCGATTCTCT
Found at i:81785 original size:14 final size:14
Alignment explanation
Indices: 81733--81786 Score: 54
Period size: 14 Copynumber: 3.5 Consensus size: 14
81723 CATTTTCGCA
81733 TTGCGATTCTCTCG
1 TTGCGATTCTCTCG
*
81747 TTGCGATTTTCATTTCG
1 TTGCGA--TTC-TCTCG
81764 CATTGCGATTCTCTCG
1 --TTGCGATTCTCTCG
81780 TTGCGAT
1 TTGCGAT
81787 AGTCATTTCC
Statistics
Matches: 33, Mismatches: 2, Indels: 10
0.73 0.04 0.22
Matches are distributed among these distances:
14 13 0.39
16 7 0.21
17 7 0.21
19 6 0.18
ACGTcount: A:0.11, C:0.24, G:0.20, T:0.44
Consensus pattern (14 bp):
TTGCGATTCTCTCG
Found at i:81820 original size:19 final size:20
Alignment explanation
Indices: 81778--81829 Score: 97
Period size: 20 Copynumber: 2.6 Consensus size: 20
81768 GCGATTCTCT
81778 CGTTGCGATAGTCATTTCCG
1 CGTTGCGATAGTCATTTCCG
81798 CGTTGCGATAGTCATTT-CG
1 CGTTGCGATAGTCATTTCCG
81817 CGTTGCGATAGTC
1 CGTTGCGATAGTC
81830 TGTTTTGCAT
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
19 15 0.47
20 17 0.53
ACGTcount: A:0.15, C:0.23, G:0.27, T:0.35
Consensus pattern (20 bp):
CGTTGCGATAGTCATTTCCG
Found at i:81950 original size:14 final size:14
Alignment explanation
Indices: 81931--81967 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
81921 CATCAATTAA
81931 ACAAATCAACATTT
1 ACAAATCAACATTT
* *
81945 ACAAATCATCTTTT
1 ACAAATCAACATTT
81959 ACAAATCAA
1 ACAAATCAA
81968 TTAAATAATC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.49, C:0.22, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACATTT
Found at i:83402 original size:21 final size:22
Alignment explanation
Indices: 83352--83454 Score: 65
Period size: 21 Copynumber: 4.9 Consensus size: 22
83342 AATGTTGGGA
* *
83352 GGGACCTCTTCAAC-GATGACAG
1 GGGA-CTCTTGAACGGATGAGAG
* *
83374 TGGCCTCTTGAACGG-TGAGAG
1 GGGACTCTTGAACGGATGAGAG
* *
83395 GGGACTCTTG-AGGGATGATAG
1 GGGACTCTTGAACGGATGAGAG
* *
83416 GGGCCTCTTGAAC-GAT-AGGG
1 GGGACTCTTGAACGGATGAGAG
*
83436 GAGGCCTCTTGAAC-GATGA
1 G-GGACTCTTGAACGGATGA
83455 AAGGTGAGTC
Statistics
Matches: 64, Mismatches: 12, Indels: 10
0.74 0.14 0.12
Matches are distributed among these distances:
20 6 0.09
21 53 0.83
22 5 0.08
ACGTcount: A:0.23, C:0.19, G:0.36, T:0.21
Consensus pattern (22 bp):
GGGACTCTTGAACGGATGAGAG
Found at i:83454 original size:42 final size:42
Alignment explanation
Indices: 83350--83454 Score: 113
Period size: 42 Copynumber: 2.5 Consensus size: 42
83340 AGAATGTTGG
* * * *
83350 GAGGGACCTCTTCAACGATGACAGTGGCCTCTTGAACGGTGA
1 GAGGGGCCTCTTGAACGATGACAGGGGCCTCTTGAACGATGA
* ** *
83392 GAGGGGACTCTTGAGGGATGATAGGGGCCTCTTGAACGAT-A
1 GAGGGGCCTCTTGAACGATGACAGGGGCCTCTTGAACGATGA
*
83433 GGGGAGGCCTCTTGAACGATGA
1 GAGG-GGCCTCTTGAACGATGA
83455 AAGGTGAGTC
Statistics
Matches: 50, Mismatches: 12, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
41 4 0.08
42 46 0.92
ACGTcount: A:0.24, C:0.19, G:0.36, T:0.21
Consensus pattern (42 bp):
GAGGGGCCTCTTGAACGATGACAGGGGCCTCTTGAACGATGA
Found at i:83961 original size:20 final size:20
Alignment explanation
Indices: 83938--84006 Score: 102
Period size: 20 Copynumber: 3.5 Consensus size: 20
83928 GAAACTTAAA
83938 ATCGCAACGCGAAAATGACT
1 ATCGCAACGCGAAAATGACT
83958 ATCGCAACGCGAAAATGACT
1 ATCGCAACGCGAAAATGACT
* * **
83978 ATCACAATGCGAATTTGACT
1 ATCGCAACGCGAAAATGACT
83998 ATCGCAACG
1 ATCGCAACG
84007 AGAGAATCAC
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.38, C:0.25, G:0.19, T:0.19
Consensus pattern (20 bp):
ATCGCAACGCGAAAATGACT
Found at i:84076 original size:20 final size:20
Alignment explanation
Indices: 84051--84173 Score: 116
Period size: 20 Copynumber: 6.5 Consensus size: 20
84041 AATTTTTTCG
*
84051 TTGCGATAGTCAAATTCGCA
1 TTGCGATAGTCAATTTCGCA
* *
84071 TTGCGATAGTCATTTTCGCG
1 TTGCGATAGTCAATTTCGCA
* *
84091 TTGCGATAGTCATTTTCGCG
1 TTGCGATAGTCAATTTCGCA
**
84111 TTGCGATTTTC-ATTTCGCA
1 TTGCGATAGTCAATTTCGCA
*
84130 TTGCGAT--TC--TCTCG--
1 TTGCGATAGTCAATTTCGCA
*
84144 TTGCGATAGTCATTTTCGCA
1 TTGCGATAGTCAATTTCGCA
84164 TTGCGATAGT
1 TTGCGATAGT
84174 AAACTAATTC
Statistics
Matches: 88, Mismatches: 9, Indels: 12
0.81 0.08 0.11
Matches are distributed among these distances:
14 7 0.08
16 6 0.07
17 2 0.02
18 4 0.05
19 13 0.15
20 56 0.64
ACGTcount: A:0.18, C:0.20, G:0.22, T:0.40
Consensus pattern (20 bp):
TTGCGATAGTCAATTTCGCA
Found at i:86115 original size:20 final size:20
Alignment explanation
Indices: 86057--86124 Score: 91
Period size: 20 Copynumber: 3.4 Consensus size: 20
86047 GAAACTTAAA
**
86057 ATCGCAACACGAAAATGAAA
1 ATCGCAACACGAAAATGACT
86077 ATCGCAACACGAAAATGACT
1 ATCGCAACACGAAAATGACT
* **
86097 ATCGCAATACGAATTTGACT
1 ATCGCAACACGAAAATGACT
86117 ATCGCAAC
1 ATCGCAAC
86125 GCAAGAATCG
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.44, C:0.24, G:0.15, T:0.18
Consensus pattern (20 bp):
ATCGCAACACGAAAATGACT
Found at i:86556 original size:22 final size:22
Alignment explanation
Indices: 86494--86559 Score: 105
Period size: 22 Copynumber: 3.0 Consensus size: 22
86484 TGACCGTGAA
* *
86494 TGATTTCGTTGGAGATGGAGAC
1 TGATTTCGTCGGAGATGGGGAC
*
86516 TGATATCGTCGGAGATGGGGAC
1 TGATTTCGTCGGAGATGGGGAC
86538 TGATTTCGTCGGAGATGGGGAC
1 TGATTTCGTCGGAGATGGGGAC
86560 GGATGTCGCC
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 40 1.00
ACGTcount: A:0.21, C:0.12, G:0.39, T:0.27
Consensus pattern (22 bp):
TGATTTCGTCGGAGATGGGGAC
Found at i:86777 original size:20 final size:20
Alignment explanation
Indices: 86738--86826 Score: 117
Period size: 20 Copynumber: 4.5 Consensus size: 20
86728 GCTATGTAAA
*
86738 TCGCATTGCGATAGTA-ATAT
1 TCGCATTGCGAT-TTACATAT
* *
86758 TCGCGTTACGATTTACATAT
1 TCGCATTGCGATTTACATAT
*
86778 TCGCATTGCGATTTACGTAT
1 TCGCATTGCGATTTACATAT
*
86798 TCGCATTGCGATTTACGTAT
1 TCGCATTGCGATTTACATAT
86818 TCGCATTGC
1 TCGCATTGC
86827 AAATTAGGAA
Statistics
Matches: 62, Mismatches: 6, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
19 2 0.03
20 60 0.97
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.38
Consensus pattern (20 bp):
TCGCATTGCGATTTACATAT
Found at i:86852 original size:21 final size:21
Alignment explanation
Indices: 86828--86870 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
86818 TCGCATTGCA
86828 AATTAGGAAAATCGCAACGCG
1 AATTAGGAAAATCGCAACGCG
* *
86849 AATTTGGAAAATCGCAATGCG
1 AATTAGGAAAATCGCAACGCG
86870 A
1 A
86871 TAGTCAGAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.42, C:0.16, G:0.23, T:0.19
Consensus pattern (21 bp):
AATTAGGAAAATCGCAACGCG
Found at i:87874 original size:17 final size:19
Alignment explanation
Indices: 87843--87880 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
87833 ACATTTGGTC
87843 ATCAATATTTATATATTTT
1 ATCAATATTTATATATTTT
*
87862 ATCAATTTTTATAT-TTTT
1 ATCAATATTTATATATTTT
87880 A
1 A
87881 ATTCAATTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (19 bp):
ATCAATATTTATATATTTT
Found at i:88600 original size:13 final size:13
Alignment explanation
Indices: 88584--88608 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
88574 TGAAAAAATG
88584 ATGAATTTAATAA
1 ATGAATTTAATAA
88597 ATGAATTTAATA
1 ATGAATTTAATA
88609 TTTATATTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.08, T:0.40
Consensus pattern (13 bp):
ATGAATTTAATAA
Found at i:89458 original size:16 final size:17
Alignment explanation
Indices: 89427--89460 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
89417 AAAAGGAGTA
*
89427 TTTTTATTTCCATTTAT
1 TTTTTATTTACATTTAT
89444 TTTTTATTTAC-TTTAT
1 TTTTTATTTACATTTAT
89460 T
1 T
89461 AATTTTAACT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.18, C:0.09, G:0.00, T:0.74
Consensus pattern (17 bp):
TTTTTATTTACATTTAT
Found at i:90306 original size:139 final size:138
Alignment explanation
Indices: 90026--90324 Score: 499
Period size: 139 Copynumber: 2.2 Consensus size: 138
90016 AACATACTAA
* *
90026 AGAGTTCATAATGAGAAGAACTCATCCGATGAAGGAGGAGAAGTTCATAATGAGAAGAACTTGTT
1 AGAGTTCATAATGAGAAGAACTCACCCGATGAAGGAGAAGAAGTTCATAATGAGAAGAACTTGTT
*
90091 CAACTTAGCTCGATTCGTCACATATGGAGTTGAATCAGCAACACCTCACTCGAGTGATCAACATT
66 CAACTTAGCTCGATTCGTCACATATGGAGTTGAATCAGCAACACCTCACTCGAGGGATCAACATT
*
90156 TCGAATGG
131 TCCAATGG
* *
90164 AGAGTTCATAATAATAAGAACTCACCCGATGAAGGAGAAGAAGTTCATAATGAGAAGAACTTGTT
1 AGAGTTCATAATGAGAAGAACTCACCCGATGAAGGAGAAGAAGTTCATAATGAGAAGAACTTGTT
* *
90229 CAACCTTAGCTCGATTCGTCACATATGGAGTTGAATCAGTAACACCTCACTCGAGGGATCAACCT
66 CAA-CTTAGCTCGATTCGTCACATATGGAGTTGAATCAGCAACACCTCACTCGAGGGATCAACAT
*
90294 TTCCAGTGG
130 TTCCAATGG
*
90303 AGAGTCCATAATGAGAAGAACT
1 AGAGTTCATAATGAGAAGAACT
90325 TTAGCTTGTT
Statistics
Matches: 148, Mismatches: 12, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
138 64 0.43
139 84 0.57
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.24
Consensus pattern (138 bp):
AGAGTTCATAATGAGAAGAACTCACCCGATGAAGGAGAAGAAGTTCATAATGAGAAGAACTTGTT
CAACTTAGCTCGATTCGTCACATATGGAGTTGAATCAGCAACACCTCACTCGAGGGATCAACATT
TCCAATGG
Found at i:91246 original size:13 final size:14
Alignment explanation
Indices: 91219--91247 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
91209 TGATTCGAAC
91219 AAAAAAAAAGCAAA
1 AAAAAAAAAGCAAA
91233 AAAAAAAAAG-AAA
1 AAAAAAAAAGCAAA
91246 AA
1 AA
91248 TATAATTTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.33
14 10 0.67
ACGTcount: A:0.90, C:0.03, G:0.07, T:0.00
Consensus pattern (14 bp):
AAAAAAAAAGCAAA
Found at i:92830 original size:98 final size:100
Alignment explanation
Indices: 92653--92837 Score: 266
Period size: 98 Copynumber: 1.9 Consensus size: 100
92643 GTAAACCAAT
* * * * *
92653 CAACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAATTTCATA
1 CAACATTTCCAATGAAGAGATCATAATGAGAAGAACTCATCCGACAGAAGGAGAAGAAGTTAATA
* * *
92718 ATGAGAAGAGCTTGTTCGACCTATCACTCGATTCA
66 ATGAGAAAAACTTGTTCAACCTATCACTCGATTCA
* *
92753 CAACATTT-CAGTGAAGAGATCATAATGAGAAGAACTCATCCGA-TGAAGGAGAAGAAGTTAATA
1 CAACATTTCCAATGAAGAGATCATAATGAGAAGAACTCATCCGACAGAAGGAGAAGAAGTTAATA
92816 ATGAGAAAAACTTGTTCAACCT
66 ATGAGAAAAACTTGTTCAACCT
92838 TAGTTCGATT
Statistics
Matches: 75, Mismatches: 10, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
98 35 0.47
99 32 0.43
100 8 0.11
ACGTcount: A:0.39, C:0.17, G:0.21, T:0.23
Consensus pattern (100 bp):
CAACATTTCCAATGAAGAGATCATAATGAGAAGAACTCATCCGACAGAAGGAGAAGAAGTTAATA
ATGAGAAAAACTTGTTCAACCTATCACTCGATTCA
Found at i:92937 original size:139 final size:139
Alignment explanation
Indices: 92753--93066 Score: 477
Period size: 139 Copynumber: 2.3 Consensus size: 139
92743 ACTCGATTCA
* * *
92753 CAACATTT-CAGTGAAGAGATCATAATGAGAAGAACTCATCCGATGAAGGAGAAGAAGTTAATAA
1 CAACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGATGAAGGAGAAGAAGTTAATAA
* * * *
92817 TGAGAAAAACTTGTTCAACCTTAGTTCGATTTGTCACATATGGAGTTGAATCAGCAACACCTCAC
66 TGAGAAAAACTTGTTCAACCTTAGCTCGATTCGTCACATATGGAGTTGAATAAACAACACCTCAC
92882 TCGAGGGAT
131 TCGAGGGAT
* * *
92891 CAACATTTCCAATTGAGAGTTCATAATGAGAAAAACTCATCCGATGAAGGAGAAGAAGTTCATAA
1 CAACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGATGAAGGAGAAGAAGTTAATAA
* * *
92956 TGAGAATAACTTGTTCAGCCTTAGCTCGATTCGTCACATATGGAGTTGAATAAACAACACCTTAC
66 TGAGAAAAACTTGTTCAACCTTAGCTCGATTCGTCACATATGGAGTTGAATAAACAACACCTCAC
93021 TCGAGGGAT
131 TCGAGGGAT
* * *
93030 CAACCTTTCCAGTGGAGAGTCCATAATGAGAAGAACT
1 CAACATTTCCAATGGAGAGTTCATAATGAGAAGAACT
93067 TTAGATTGTT
Statistics
Matches: 157, Mismatches: 18, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
138 8 0.05
139 149 0.95
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.25
Consensus pattern (139 bp):
CAACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGATGAAGGAGAAGAAGTTAATAA
TGAGAAAAACTTGTTCAACCTTAGCTCGATTCGTCACATATGGAGTTGAATAAACAACACCTCAC
TCGAGGGAT
Found at i:93388 original size:3 final size:3
Alignment explanation
Indices: 93380--93411 Score: 55
Period size: 3 Copynumber: 10.3 Consensus size: 3
93370 TTTTCTAATA
93380 TAT TAT TAT TAT TAT TAT TAAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT T
93412 TACATTACAG
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 25 0.89
4 3 0.11
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:93993 original size:2 final size:2
Alignment explanation
Indices: 93986--94016 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
93976 AATAAAAACA
93986 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
94017 ATTTCAGTCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:94478 original size:16 final size:17
Alignment explanation
Indices: 94453--94492 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
94443 AATCAAATTT
94453 AAAATAAAAAATGAAAA-
1 AAAATAAAAAA-GAAAAG
94470 AAAATAAAAAAGAAAAG
1 AAAATAAAAAAGAAAAG
94487 AAAATA
1 AAAATA
94493 TGGTATTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 5 0.23
17 17 0.77
ACGTcount: A:0.82, C:0.00, G:0.07, T:0.10
Consensus pattern (17 bp):
AAAATAAAAAAGAAAAG
Found at i:98051 original size:19 final size:19
Alignment explanation
Indices: 98027--98063 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
98017 TTTGTTTTTT
98027 TGTATTTCTCT-TCTCTCTG
1 TGTATTT-TCTGTCTCTCTG
98046 TGTATTTTCTGTCTCTCT
1 TGTATTTTCTGTCTCTCT
98064 TTTCTCTGTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 3 0.18
19 14 0.82
ACGTcount: A:0.05, C:0.24, G:0.11, T:0.59
Consensus pattern (19 bp):
TGTATTTTCTGTCTCTCTG
Found at i:98493 original size:3 final size:3
Alignment explanation
Indices: 98487--98569 Score: 105
Period size: 3 Copynumber: 27.7 Consensus size: 3
98477 TATATGTATT
* * *
98487 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAT TTA TAA TAA TTA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
98535 TAA TAA TTA TAA TTA TAA TAA TAAA TAA -AA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TA
98570 TGGGTAAAAA
Statistics
Matches: 68, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
2 2 0.03
3 63 0.93
4 3 0.04
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (3 bp):
TAA
Found at i:99109 original size:113 final size:112
Alignment explanation
Indices: 98892--99532 Score: 944
Period size: 112 Copynumber: 5.7 Consensus size: 112
98882 GTTGAACAAA
* * * *
98892 TTCTTCTTCCTTCTTCAGATGAGTTCTTCTTATTATGAACTTTTCTGGAAATGCTGATCTATCAA
1 TTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTCTCTGGAAAAGCTGATCCATCAA
* * * * *
98957 TTGAT-GAATTCATGTAAAAGGTTGAACAAGTTCTTCTCATTATGAAC
66 ATGATGGATTTGA-GCAAAAGGTTGAACAAATTCTTCTCATTATGAAC
* * * *
99004 TTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTCTGGCAAGGCTAATTCATCA
1 TTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAA-CTTCTCTGGAAAAGCTGATCCATCA
*
99069 AGTGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAAC
65 AATGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAAC
* *
99117 TTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTCTGGAAAATCTGATCCATCAA
1 TTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTCTCTGGAAAAGCTGATCCATCAA
*
99182 ATGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAAT
66 ATGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAAC
* * *
99229 TTCTTCTTCCTTCTTCAAATGAGTTCTTCTCATTATGAACCTTCTCTGGCAAAA-ATAATCCATC
1 TTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAA-CTTCTCTGG-AAAAGCTGATCCATC
* * **
99293 AAGTGATGAATTCAAGCAAAAGGTTGAACAAATTCTTCTCATTATGAAC
64 AAATGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAAC
* *
99342 TTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTCTGGAAAATCTGATCCATCAA
1 TTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTCTCTGGAAAAGCTGATCCATCAA
**
99407 ATGATGGATTTGAGCAAAAGGTTGAACAAGCTCTTCTCATTATGAAC
66 ATGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAAC
* * *
99454 TTTTTCTTCATTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTTTGGAAAAGCTGATCCATCA
1 TTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAAC-TTCTCTGGAAAAGCTGATCCATCA
99519 AATGATGGATTTGA
65 AATGATGGATTTGA
99533 ATCTTTGCTA
Statistics
Matches: 479, Mismatches: 44, Indels: 11
0.90 0.08 0.02
Matches are distributed among these distances:
111 4 0.01
112 238 0.50
113 228 0.48
114 9 0.02
ACGTcount: A:0.28, C:0.19, G:0.14, T:0.39
Consensus pattern (112 bp):
TTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTCTCTGGAAAAGCTGATCCATCAA
ATGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAAC
Found at i:99203 original size:225 final size:225
Alignment explanation
Indices: 98892--99532 Score: 1034
Period size: 225 Copynumber: 2.8 Consensus size: 225
98882 GTTGAACAAA
* *
98892 TTCTTCTTCCTTCTTCAGATGAGTTCTTCTTATTATGAACTTTTCTGG-AAATGCTGATCTATCA
1 TTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTCTGGAAAAT-CTGATCCATCA
* * * *
98956 ATTGAT-GAATTCATGTAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTC
65 AATGATGGATTTGA-GCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTC
* *
99020 AGATGAGTTCTTCTCATTATGAACCTTCTCTGGCAAGGCTAATTCATCAAGTGATGGATTTGAGC
129 AGATGAGTTCTTCTCATTATGAACCTTCTCTGGCAAAGCTAATCCATCAAGTGATGGATTTGAGC
99085 AAAAGGTTGAACAAATTCTTCTCATTATGAAC
194 AAAAGGTTGAACAAATTCTTCTCATTATGAAC
99117 TTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTCTGGAAAATCTGATCCATCAA
1 TTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTCTGGAAAATCTGATCCATCAA
* * *
99182 ATGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAA
66 ATGATGGATTTGAGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAG
** * **
99247 ATGAGTTCTTCTCATTATGAACCTTCTCTGGCAAAAATAATCCATCAAGTGATGAATTCAAGCAA
131 ATGAGTTCTTCTCATTATGAACCTTCTCTGGCAAAGCTAATCCATCAAGTGATGGATTTGAGCAA
99312 AAGGTTGAACAAATTCTTCTCATTATGAAC
196 AAGGTTGAACAAATTCTTCTCATTATGAAC
99342 TTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTCTGGAAAATCTGATCCATCAA
1 TTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTCTGGAAAATCTGATCCATCAA
* * *
99407 ATGATGGATTTGAGCAAAAGGTTGAACAAGCTCTTCTCATTATGAACTTTTTCTTCATTCTTCAG
66 ATGATGGATTTGAGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAG
* * * * *
99472 ATGAGTTCTTCTCATTATGAACTTTCTTTGGAAAAGCTGATCCATCAAATGATGGATTTGA
131 ATGAGTTCTTCTCATTATGAACCTTCTCTGGCAAAGCTAATCCATCAAGTGATGGATTTGA
99533 ATCTTTGCTA
Statistics
Matches: 382, Mismatches: 32, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
225 373 0.98
226 9 0.02
ACGTcount: A:0.28, C:0.19, G:0.14, T:0.39
Consensus pattern (225 bp):
TTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTCTGGAAAATCTGATCCATCAA
ATGATGGATTTGAGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAG
ATGAGTTCTTCTCATTATGAACCTTCTCTGGCAAAGCTAATCCATCAAGTGATGGATTTGAGCAA
AAGGTTGAACAAATTCTTCTCATTATGAAC
Found at i:100897 original size:83 final size:83
Alignment explanation
Indices: 100256--100882 Score: 1082
Period size: 83 Copynumber: 7.6 Consensus size: 83
100246 GTAGTTCTTA
*
100256 CCAAACCAGATCAAATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTTCAA
1 CCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTTCAA
100321 ATTCAATGATTGGTTCTG
66 ATTCAATGATTGGTTCTG
* ** *
100339 CCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGTTA-TGAGCCCATTCATCTTCCA
1 CCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTG-GCAAATTCATCTTTCA
100403 AATTCAATGATTGGTTCTG
65 AATTCAATGATTGGTTCTG
*
100422 CCAAACCAGATCAAATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTTCAA
1 CCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTTCAA
100487 ATTCAATGATTGGTTCTG
66 ATTCAATGATTGGTTCTG
100505 CCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTTCAA
1 CCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTTCAA
100570 ATTCAATGATTGGTTCTG
66 ATTCAATGATTGGTTCTG
100588 CCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTTCAA
1 CCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTTCAA
100653 ATTCAATGATTGGTTCTG
66 ATTCAATGATTGGTTCTG
* *
100671 CCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTA-TGAGCACATTCATCTTTTA
1 CCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTG-GCAAATTCATCTTTCA
100735 AATTCAATGATTGGTTCTG
65 AATTCAATGATTGGTTCTG
* * *
100754 TCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTA-TGAGCACATTCATCTTTTA
1 CCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTG-GCAAATTCATCTTTCA
100818 AATTCAATGATTGGTTCTG
65 AATTCAATGATTGGTTCTG
*
100837 TCC-AACCAAATCAGATAACTCAAAGAACACTTCCAGAAGATGCTAT
1 -CCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTAT
100883 GAGCCCATTC
Statistics
Matches: 523, Mismatches: 16, Indels: 9
0.95 0.03 0.02
Matches are distributed among these distances:
82 4 0.01
83 516 0.99
84 3 0.01
ACGTcount: A:0.37, C:0.22, G:0.14, T:0.27
Consensus pattern (83 bp):
CCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTTCAA
ATTCAATGATTGGTTCTG
Found at i:102056 original size:1 final size:1
Alignment explanation
Indices: 102052--102097 Score: 56
Period size: 1 Copynumber: 46.0 Consensus size: 1
102042 CTTTTGTCTC
* * * *
102052 TTTTTTTTCTTTTCTTTTTTTTTTTTTTTTTTTCTTTTCTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
102098 CTTCAAGCAT
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
1 37 1.00
ACGTcount: A:0.00, C:0.09, G:0.00, T:0.91
Consensus pattern (1 bp):
T
Found at i:102056 original size:16 final size:14
Alignment explanation
Indices: 102035--102100 Score: 66
Period size: 13 Copynumber: 4.7 Consensus size: 14
102025 CTTGACCCTC
102035 CTTTTTTCTTTTGTCT
1 CTTTTTTCTTTT-T-T
102051 CTTTTTT-TTCTTTT
1 CTTTTTTCTT-TTTT
102065 CTTTTTT-TTTTTT
1 CTTTTTTCTTTTTT
* *
102078 TTTTTTTCTTTTCT
1 CTTTTTTCTTTTTT
102092 -TTTTTTCTT
1 CTTTTTTCTT
102101 CAAGCATAAT
Statistics
Matches: 46, Mismatches: 2, Indels: 7
0.84 0.04 0.13
Matches are distributed among these distances:
13 19 0.41
14 15 0.33
15 3 0.07
16 9 0.20
ACGTcount: A:0.00, C:0.14, G:0.02, T:0.85
Consensus pattern (14 bp):
CTTTTTTCTTTTTT
Found at i:102057 original size:18 final size:16
Alignment explanation
Indices: 102036--102095 Score: 72
Period size: 15 Copynumber: 3.8 Consensus size: 16
102026 TTGACCCTCC
102036 TTTTTTCTTTTGTCTCTT
1 TTTTTTCTTTT-TCT-TT
102054 TTTTTTC-TTTTCTTT
1 TTTTTTCTTTTTCTTT
102069 TTTTTT-TTTTT-TTT
1 TTTTTTCTTTTTCTTT
102083 TTCTTTTCTTTTT
1 TT-TTTTCTTTTT
102096 TTCTTCAAGC
Statistics
Matches: 39, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
14 5 0.13
15 16 0.41
16 8 0.21
17 3 0.08
18 7 0.18
ACGTcount: A:0.00, C:0.12, G:0.02, T:0.87
Consensus pattern (16 bp):
TTTTTTCTTTTTCTTT
Found at i:102069 original size:13 final size:13
Alignment explanation
Indices: 102053--102100 Score: 80
Period size: 13 Copynumber: 3.8 Consensus size: 13
102043 TTTTGTCTCT
102053 TTTTTTTCTTTTC
1 TTTTTTTCTTTTC
*
102066 TTTTTTT-TTTTT
1 TTTTTTTCTTTTC
102078 TTTTTTTCTTTTC
1 TTTTTTTCTTTTC
102091 TTTTTTTCTT
1 TTTTTTTCTT
102101 CAAGCATAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
12 11 0.34
13 21 0.66
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (13 bp):
TTTTTTTCTTTTC
Found at i:102096 original size:18 final size:18
Alignment explanation
Indices: 102036--102100 Score: 67
Period size: 18 Copynumber: 3.5 Consensus size: 18
102026 TTGACCCTCC
* * *
102036 TTTTTTCTTTTGTCTCTT
1 TTTTTTCTTTTCTTTTTT
102054 TTTTTTCTTTTCTTTTTTTT
1 TTTTTTCTTTTC--TTTTTT
* *
102074 TTTTTTTTTTTCTTTTCT
1 TTTTTTCTTTTCTTTTTT
102092 TTTTTTCTT
1 TTTTTTCTT
102101 CAAGCATAAT
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
18 24 0.62
20 15 0.38
ACGTcount: A:0.00, C:0.12, G:0.02, T:0.86
Consensus pattern (18 bp):
TTTTTTCTTTTCTTTTTT
Found at i:112215 original size:9 final size:9
Alignment explanation
Indices: 112201--112225 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
112191 TAAACATGCT
112201 TTTAAATAA
1 TTTAAATAA
112210 TTTAAATAA
1 TTTAAATAA
112219 TTTAAAT
1 TTTAAAT
112226 TTACATTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (9 bp):
TTTAAATAA
Found at i:112763 original size:28 final size:29
Alignment explanation
Indices: 112732--112804 Score: 78
Period size: 28 Copynumber: 2.6 Consensus size: 29
112722 AAAATAAAAC
*
112732 ATATAAATATTATGAAAA-TAATAAGTAA
1 ATATAAATATTATGAAAAGAAATAAGTAA
* * *
112760 ATATAAAAATTTTGAAAAGAAATAATTAA
1 ATATAAATATTATGAAAAGAAATAAGTAA
*
112789 AAATTAAATA-TATGAA
1 ATA-TAAATATTATGAA
112805 TTTTTAATTT
Statistics
Matches: 36, Mismatches: 7, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
28 16 0.44
29 15 0.42
30 5 0.14
ACGTcount: A:0.62, C:0.00, G:0.07, T:0.32
Consensus pattern (29 bp):
ATATAAATATTATGAAAAGAAATAAGTAA
Found at i:114437 original size:19 final size:19
Alignment explanation
Indices: 114413--114449 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
114403 TTTGTTTTTT
114413 TGTATTTCTCT-TCTCTCTG
1 TGTATTT-TCTGTCTCTCTG
114432 TGTATTTTCTGTCTCTCT
1 TGTATTTTCTGTCTCTCT
114450 TTTCTCTGTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 3 0.18
19 14 0.82
ACGTcount: A:0.05, C:0.24, G:0.11, T:0.59
Consensus pattern (19 bp):
TGTATTTTCTGTCTCTCTG
Found at i:114673 original size:15 final size:15
Alignment explanation
Indices: 114653--114688 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
114643 AGCGGTGGAG
*
114653 GCGGCGATAGCAGCA
1 GCGGCGAGAGCAGCA
114668 GCGGCGAGAGCAGCA
1 GCGGCGAGAGCAGCA
114683 GCGGCG
1 GCGGCG
114689 GCCGCGTGGC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.22, C:0.28, G:0.47, T:0.03
Consensus pattern (15 bp):
GCGGCGAGAGCAGCA
Found at i:114893 original size:3 final size:3
Alignment explanation
Indices: 114887--114980 Score: 120
Period size: 3 Copynumber: 31.7 Consensus size: 3
114877 TATATGTATT
* *
114887 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAT TTA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * *
114935 TTA TAA TAA TAA TAA TTA T-A TAA TTA TAA TAA TAAA TAA -AA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA
114979 TA
1 TA
114981 TGGGTAAAAA
Statistics
Matches: 79, Mismatches: 9, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
2 4 0.05
3 72 0.91
4 3 0.04
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (3 bp):
TAA
Found at i:120470 original size:19 final size:19
Alignment explanation
Indices: 120446--120484 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
120436 AAATGTATAA
120446 TAAAGTTGTAGACACTCAT
1 TAAAGTTGTAGACACTCAT
120465 TAAAGTTGTAGACACTCAT
1 TAAAGTTGTAGACACTCAT
120484 T
1 T
120485 TTCGCCCTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.33
Consensus pattern (19 bp):
TAAAGTTGTAGACACTCAT
Found at i:120520 original size:4 final size:4
Alignment explanation
Indices: 120496--120541 Score: 65
Period size: 4 Copynumber: 11.5 Consensus size: 4
120486 TCGCCCTGAG
* * *
120496 TTAT TTAT ATAT ATAT ATAT TTAT TTAT TTAT TTAT TTAT TTAT TT
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TT
120542 TATAGTTTGT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
4 40 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (4 bp):
TTAT
Found at i:120683 original size:27 final size:27
Alignment explanation
Indices: 120645--120697 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
120635 GTTAAAAAAA
120645 TATATAATATATAGTTTTGAAAACATG
1 TATATAATATATAGTTTTGAAAACATG
* *
120672 TATATATTATATAGTTTTTAAAACAT
1 TATATAATATATAGTTTTGAAAACAT
120698 TTCGAAAACT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.43, C:0.04, G:0.08, T:0.45
Consensus pattern (27 bp):
TATATAATATATAGTTTTGAAAACATG
Found at i:120712 original size:63 final size:64
Alignment explanation
Indices: 120609--120734 Score: 148
Period size: 63 Copynumber: 2.0 Consensus size: 64
120599 TTCGAAAATT
*
120609 TATATATTATATAGTTTCTGAAAATAGTTAAAAAAATATATAATATATAG-TTTTGAAAACATG
1 TATATATTATATAGTTTCTGAAAACAGTTAAAAAAATATATAATATATAGTTTTTGAAAACATG
* * * ** ** *
120672 TATATATTATATAGTTT-TTAAAACATTTCGAAAACTTATATGGTATATAGTTTTTTAAAACAT
1 TATATATTATATAGTTTCTGAAAACAGTT-AAAAAAATATATAATATATAGTTTTTGAAAACAT
120735 TTTTGAAAAA
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
62 8 0.15
63 33 0.63
64 11 0.21
ACGTcount: A:0.44, C:0.05, G:0.09, T:0.43
Consensus pattern (64 bp):
TATATATTATATAGTTTCTGAAAACAGTTAAAAAAATATATAATATATAGTTTTTGAAAACATG
Found at i:120736 original size:37 final size:37
Alignment explanation
Indices: 120659--120973 Score: 297
Period size: 36 Copynumber: 8.8 Consensus size: 37
120649 TAATATATAG
*
120659 TTTTGAAAACATGTATATATTATATAGTTTTTAAAACA-
1 TTTTGAAAA-AT-TATATAGTATATAGTTTTTAAAACAT
* * *
120697 TTTCGAAAACTTATATGGTATATAGTTTTTTAAAACAT
1 TTTTGAAAAATTATATAGTATATAG-TTTTTAAAACAT
120735 TTTTGAAAAATTATATAGTATATAG-TTTTAAAACAT
1 TTTTGAAAAATTATATAGTATATAGTTTTTAAAACAT
*
120771 TTTTGAAAAATTATATAGTATATAGTTTTAAAAACAT
1 TTTTGAAAAATTATATAGTATATAGTTTTTAAAACAT
* * *
120808 TTTTGAAAAATTATATAATATATAGTTTTAAAAACGTT
1 TTTTGAAAAATTATATAGTATATAGTTTTTAAAAC-AT
* *
120846 TTTTG-GAAACT-TATA-TA-ATA-TTTTTAAAATCA-
1 TTTTGAAAAATTATATAGTATATAGTTTTTAAAA-CAT
* * *
120878 TTTTG-AAAACTATATAATATATAGTTTTGAAAAC-T
1 TTTTGAAAAATTATATAGTATATAGTTTTTAAAACAT
* * *
120913 TTTT--TAAA-TATA-A-TATATAGTTTTAAAAAATAT
1 TTTTGAAAAATTATATAGTATATAGTTTT-TAAAACAT
*
120946 TTTTG--AAA-TATATATTATATAGTTTTTA
1 TTTTGAAAAATTATATAGTATATAGTTTTTA
120974 TCATGTTATT
Statistics
Matches: 242, Mismatches: 20, Indels: 34
0.82 0.07 0.11
Matches are distributed among these distances:
31 11 0.05
32 15 0.06
33 28 0.12
34 11 0.05
35 21 0.09
36 60 0.25
37 60 0.25
38 36 0.15
ACGTcount: A:0.43, C:0.04, G:0.08, T:0.46
Consensus pattern (37 bp):
TTTTGAAAAATTATATAGTATATAGTTTTTAAAACAT
Found at i:120923 original size:24 final size:22
Alignment explanation
Indices: 120866--120924 Score: 57
Period size: 24 Copynumber: 2.5 Consensus size: 22
120856 TTATATAATA
120866 TTTTTAAA-ATCATTTTGAAAAC
1 TTTTTAAATAT-ATTTTGAAAAC
* *
120888 TATATAATATATAGTTTTGAAAAC
1 TTTTTAA-ATATA-TTTTGAAAAC
120912 TTTTTTAAATATA
1 -TTTTTAAATATA
120925 ATATATAGTT
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
22 5 0.17
23 2 0.07
24 17 0.59
25 5 0.17
ACGTcount: A:0.42, C:0.05, G:0.05, T:0.47
Consensus pattern (22 bp):
TTTTTAAATATATTTTGAAAAC
Found at i:120924 original size:31 final size:33
Alignment explanation
Indices: 120889--120971 Score: 116
Period size: 31 Copynumber: 2.5 Consensus size: 33
120879 TTTGAAAACT
* *
120889 ATATAATATATAGTTTTGAAAACT-TTTTT-AA
1 ATATAATATATAGTTTTAAAAAATATTTTTGAA
120920 ATATAATATATAGTTTTAAAAAATATTTTTGAA
1 ATATAATATATAGTTTTAAAAAATATTTTTGAA
120953 ATATATATTATATAGTTTT
1 ATATA-A-TATATAGTTTT
120972 TATCATGTTA
Statistics
Matches: 46, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
31 22 0.48
32 5 0.11
33 7 0.15
34 1 0.02
35 11 0.24
ACGTcount: A:0.43, C:0.01, G:0.06, T:0.49
Consensus pattern (33 bp):
ATATAATATATAGTTTTAAAAAATATTTTTGAA
Found at i:122326 original size:21 final size:22
Alignment explanation
Indices: 122262--122340 Score: 63
Period size: 21 Copynumber: 3.5 Consensus size: 22
122252 TATCATATTT
* *
122262 TCATTTTTATTATCTCTATTTTTT
1 TCATTTTTATTAT-TATA-TTTTA
*
122286 TCGTTTTAGTATTATTATATTATTA
1 TCATTTT--TATTATTATATT-TTA
*
122311 TC-TTTTTATT-TTATATTTTT
1 TCATTTTTATTATTATATTTTA
122331 TCATTTTTAT
1 TCATTTTTAT
122341 ATTTTTTTCT
Statistics
Matches: 47, Mismatches: 4, Indels: 11
0.76 0.06 0.18
Matches are distributed among these distances:
20 4 0.09
21 14 0.30
22 4 0.09
24 12 0.26
25 7 0.15
26 6 0.13
ACGTcount: A:0.20, C:0.08, G:0.03, T:0.70
Consensus pattern (22 bp):
TCATTTTTATTATTATATTTTA
Found at i:124146 original size:19 final size:19
Alignment explanation
Indices: 124122--124167 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
124112 CATCATGCAT
*
124122 TTTGCATTTTGTTATTTTC
1 TTTGCATTATGTTATTTTC
124141 TTTGCATTATGTTATTTTC
1 TTTGCATTATGTTATTTTC
124160 TTTGCATT
1 TTTGCATT
124168 CACATTAACT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.13, C:0.11, G:0.11, T:0.65
Consensus pattern (19 bp):
TTTGCATTATGTTATTTTC
Found at i:132321 original size:84 final size:83
Alignment explanation
Indices: 132160--133026 Score: 890
Period size: 84 Copynumber: 10.4 Consensus size: 83
132150 TTTAAGATAA
* *
132160 CATTTGCAGCATAACTCAAGGCGAGAAGGGTTATCTGCCAACAAAGAGCTTCGAGTTCGACTACG
1 CATTTGCAGCATAGCTCAAGGCGAGAAGGGTTATCTGCCAACAAAGACCTTCGAGTTCGACTACG
132225 CTCAGCTCCAAGGCACAT
66 CTCAGCTCCAAGGCACAT
* * * * * *
132243 CATTTGTAACATAGCTCAAGGCAAGAAGGGCTATTTGCCAACAAAAGACCTTTGAGTTCGACTAC
1 CATTTGCAGCATAGCTCAAGGCGAGAAGGGTTATCTGCCAAC-AAAGACCTTCGAGTTCGACTAC
132308 GCTCAGCTCCAAGGCACAT
65 GCTCAGCTCCAAGGCACAT
* * * * *
132327 CATTTACAGTATAGCTTAAGTCGAGAAGGGTTATCTGCCAACAAAGACCTTCGAGTTCAACTACG
1 CATTTGCAGCATAGCTCAAGGCGAGAAGGGTTATCTGCCAACAAAGACCTTCGAGTTCGACTACG
*
132392 CTCAGCTCTAAGGCACAT
66 CTCAGCTCCAAGGCACAT
** * * * * *
132410 CATTTGCAAAATAGCTCAAGGCAAGAAGGGCTATTTGCCAACAAAAGACCTTTGAGTTTGACTAC
1 CATTTGCAGCATAGCTCAAGGCGAGAAGGGTTATCTGCCAAC-AAAGACCTTCGAGTTCGACTAC
*
132475 GCTCAGCTCCAAGGTACAT
65 GCTCAGCTCCAAGGCACAT
* * * * * *
132494 CATTTGCAGTATAGCTTAAGTCGAGAAGGGCTAGT-TG-C--CAAAGACCCTCGAGTTCGATTAC
1 CATTTGCAGCATAGCTCAAGGCGAGAAGGGTTA-TCTGCCAACAAAGACCTTCGAGTTCGACTAC
* ** * *
132555 ACTCAGCTTGAGGGTACAT
65 GCTCAGCTCCAAGGCACAT
* * * * * * * *
132574 CATTTACAGTATAACCCAAGGCTAGAAGAGTTATCTGTCTCCA-AAAGACCTTCGAGTTCTACTA
1 CATTTGCAGCATAGCTCAAGGCGAGAAGGGTTATCTG-C-CAACAAAGACCTTCGAGTTCGACTA
* *
132638 CGCTCAGCTCTAAGGCATAT
64 CGCTCAGCTCCAAGGCACAT
* * * *
132658 CATTTGCAGCATAACAT-AAGTCGAGAAGGGTTATTTGCCAACCAAAAGACCTTTGAGTTCGACT
1 CATTTGCAGCATAGC-TCAAGGCGAGAAGGGTTATCTGCCAA-C-AAAGACCTTCGAGTTCGACT
**
132722 ACGCTCAGCTCTGAGGCACAT
63 ACGCTCAGCTCCAAGGCACAT
* * * * * * * *
132743 CATTTGCAGTATAGCTTAAGTCGAGAAGGGCTATCTG-C--CAAAGACCCTCGAGTTTGATTACA
1 CATTTGCAGCATAGCTCAAGGCGAGAAGGGTTATCTGCCAACAAAGACCTTCGAGTTCGACTACG
* *
132805 CTCAGCTTCGAGGGCACAT
66 CTCAGC-TCCAAGGCACAT
* * * * *
132824 CATTTACAACATAACTCAAGGCTAGAAGGGTTATCTGTCTCCA-AAAGACCTTCGAGTTCGACTA
1 CATTTGCAGCATAGCTCAAGGCGAGAAGGGTTATCTG-C-CAACAAAGACCTTCGAGTTCGACTA
132888 CGCTCAGCTCCAAGGCACAT
64 CGCTCAGCTCCAAGGCACAT
* * *
132908 CATTTGCAGCATAACTCAAGGCTATAAGGGTTATCTGCCAACAAAGACCTTCGAGTTCGACTACG
1 CATTTGCAGCATAGCTCAAGGCGAGAAGGGTTATCTGCCAACAAAGACCTTCGAGTTCGACTACG
**
132973 CTCAGCTCTTAGGCACAT
66 CTCAGCTCCAAGGCACAT
* ** ** *
132991 CATTTACATAATAGCTCAAGGAAAGAAGGGCTATCT
1 CATTTGCAGCATAGCTCAAGGCGAGAAGGGTTATCT
133027 ATCAATAAAA
Statistics
Matches: 648, Mismatches: 115, Indels: 42
0.80 0.14 0.05
Matches are distributed among these distances:
79 1 0.00
80 84 0.13
81 40 0.06
82 4 0.01
83 179 0.28
84 246 0.38
85 94 0.15
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.25
Consensus pattern (83 bp):
CATTTGCAGCATAGCTCAAGGCGAGAAGGGTTATCTGCCAACAAAGACCTTCGAGTTCGACTACG
CTCAGCTCCAAGGCACAT
Done.