Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005947.1 Hibiscus syriacus cultivar Beakdansim tig00013962_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75471

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1717--1801
13
6.4
13
71
12
57
25
2
2
69
1.12
1732--1801
25
2.7
27
82
12
85
25
2
2
68
1.17
1847--1902
16
3.4
16
76
14
60
35
8
1
53
1.43
1845--1902
18
3.4
17
77
18
66
36
8
1
53
1.42
1819--1853
2
18.0
2
94
5
63
51
0
0
48
1.00
7415--7473
30
2.0
30
96
0
109
27
5
25
42
1.76
8006--8047
16
2.6
16
85
7
59
47
23
11
16
1.80
8003--8116
38
3.0
37
88
1
156
46
26
13
14
1.80
8063--8104
21
2.0
22
90
4
68
47
26
14
11
1.78
8044--8114
16
4.1
16
70
22
54
47
25
12
14
1.79
8877--8972
32
3.0
31
76
5
111
35
29
14
20
1.93
9491--10428
310
3.0
314
96
1
1739
35
16
11
36
1.85
13240--13305
2
33.0
2
100
0
132
50
0
0
50
1.00
16020--16053
18
1.9
17
88
5
50
79
5
8
5
1.05
16754--16791
20
1.9
20
94
0
67
42
13
18
26
1.87
21203--21485
42
6.8
42
93
1
437
21
23
23
30
1.99
22255--22279
6
4.2
6
100
0
50
0
16
48
36
1.46
22360--22562
41
4.9
41
94
1
334
31
24
23
21
1.99
22503--22570
21
3.2
20
72
15
66
30
26
20
22
1.98
33910--33975
24
2.8
24
86
2
89
28
12
12
46
1.77
43380--43499
59
2.0
59
82
9
147
50
3
11
35
1.56
43390--43517
60
2.1
60
77
8
136
50
3
10
36
1.52
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45993--46248
45
5.7
45
85
3
293
28
21
10
40
1.85
45950--46209
90
2.9
90
81
7
296
30
19
8
41
1.81
46219--46409
79
2.4
79
89
1
294
31
22
9
36
1.86
51397--51568
45
3.8
45
87
1
238
29
21
9
40
1.84
51386--51607
45
5.0
45
83
4
236
29
23
9
37
1.85
51571--51771
79
2.5
79
90
1
314
31
24
9
34
1.88
53171--53200
14
2.1
14
93
0
51
60
3
0
36
1.14
54983--55027
23
2.0
23
90
0
72
24
26
26
22
2.00
54995--55309
149
2.1
149
92
1
524
33
21
17
27
1.96
55410--55437
14
2.0
14
100
0
56
35
28
7
28
1.84
56816--56860
21
2.1
21
87
0
63
15
24
28
31
1.96
59311--59355
22
2.0
22
86
8
63
57
0
0
42
0.98
60837--60902
3
22.0
3
84
6
53
54
0
0
45
0.99
61133--61438
112
2.8
109
81
8
361
28
18
15
37
1.91
61492--61582
36
2.4
39
87
5
134
19
20
10
48
1.79
61528--62004
113
4.2
113
82
5
540
28
18
14
39
1.89
62700--63014
115
2.7
115
92
0
524
31
20
14
33
1.93
62918--63208
93
3.1
93
97
0
546
35
21
16
27
1.94
64188--64270
14
6.3
14
76
19
81
0
18
1
80
0.77
64188--64270
35
2.3
36
82
12
100
0
18
1
80
0.77
64191--64273
18
4.8
16
76
18
78
0
18
1
80
0.77
64189--64273
12
7.1
12
76
20
81
0
17
1
81
0.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
71566--71596
15
2.1
15
93
0
53
45
6
19
29
1.75

Tables:   1

The End!