genome.fa.s5948.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005948.1 Hibiscus syriacus cultivar Beakdansim tig00013963_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91301

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4582--4659	21	3.8	20	81	5	93	24	19	21	34	1.96
4582--4659	41	1.9	41	86	5	113	24	19	21	34	1.96
11590--11640	27	1.9	26	88	4	75	54	1	1	41	1.22
11797--11945	77	1.9	77	86	0	208	42	14	14	27	1.85
15575--15610	19	1.9	19	94	5	65	72	5	0	22	1.05
16172--16200	13	2.2	13	100	0	58	6	62	31	0	1.22
16953--17086	3	44.7	3	93	0	232	64	0	0	34	0.99
17381--18389	113	8.9	113	93	0	1640	28	19	14	36	1.92
18950--19664	52	13.7	52	96	0	1313	36	23	15	24	1.93
20604--20647	1	44.0	1	86	0	61	0	6	0	93	0.36
32026--32061	19	1.9	19	94	5	65	72	5	0	22	1.05
32621--32649	13	2.2	13	100	0	58	6	62	31	0	1.22
33399--33549	3	51.7	3	93	5	265	65	0	0	34	0.93
36179--36253	29	2.6	29	84	0	96	18	40	26	14	1.90
36180--36267	29	3.0	29	84	0	95	20	37	30	11	1.88
36485--36566	29	2.8	29	81	0	92	14	29	39	17	1.89
43620--43675	13	4.6	13	72	17	57	30	0	17	51	1.46
43626--43666	22	2.0	21	85	9	57	26	0	19	53	1.45
43745--43998	107	2.4	108	92	0	429	35	9	13	40	1.78
44056--44112	15	3.9	15	77	9	64	24	5	15	54	1.62
44174--44215	15	2.6	17	77	14	52	35	7	16	40	1.76
46768--46874	26	3.8	27	78	16	103	25	12	13	49	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46768--46837	13	5.4	13	71	6	52	24	10	12	52	1.69
46811--46899	33	2.7	33	82	1	106	25	12	13	48	1.77
47719--47794	16	4.6	15	74	18	62	15	2	17	64	1.40
49277--49337	32	1.9	32	83	6	79	49	8	1	40	1.42
49612--49697	40	2.2	40	95	0	154	32	11	9	46	1.72
50746--50833	41	2.1	41	87	4	124	34	25	15	25	1.95
68278--68306	3	9.7	3	100	0	58	34	0	0	65	0.93
69265--69336	22	3.3	21	79	13	74	41	2	6	48	1.44
73907--73988	29	2.8	29	96	0	146	42	9	15	31	1.80
74817--74878	14	4.8	13	71	13	56	79	1	3	16	0.95
74817--74875	27	2.3	25	82	11	66	79	1	3	15	0.94
75138--75189	25	2.0	28	88	11	83	69	1	0	28	0.99
75204--75248	12	3.7	12	81	3	54	66	0	4	28	1.11
75826--75930	37	2.8	37	86	0	147	29	15	14	40	1.86
76661--78246	106	15.0	106	89	1	2242	23	17	24	33	1.96
79072--79126	22	2.5	22	96	0	101	23	10	27	38	1.88
79728--79796	24	2.8	24	78	14	77	1	10	8	79	0.99
79732--79796	17	4.0	16	78	11	69	1	9	9	80	0.98
79732--79807	33	2.4	31	80	12	82	1	11	9	77	1.05
79735--79796	16	3.8	16	81	14	81	1	8	9	80	0.97
83064--83100	19	1.9	19	89	10	58	67	0	24	8	1.17
84229--84289	25	2.5	24	82	12	70	72	3	6	18	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84234--84326	26	3.6	25	71	20	75	74	3	4	18	1.12
84248--84317	13	5.5	12	75	11	52	78	4	2	14	1.02
84250--84326	24	3.1	23	74	20	66	76	3	2	16	1.05
84236--84342	39	2.7	39	75	13	94	71	4	5	17	1.22
84535--84669	72	1.9	72	83	6	175	68	1	6	23	1.22
84645--84687	12	3.6	12	83	0	59	67	0	4	27	1.10
85263--85364	37	2.8	36	83	3	123	31	10	14	43	1.80
90601--90863	44	6.0	44	78	8	250	39	12	28	19	1.88

Tables:   1

The End!