Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005949.1 Hibiscus syriacus cultivar Beakdansim tig00013970_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67210

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31--110
40
2.0
40
97
0
151
26
20
18
35
1.95
3178--3242
2
35.0
2
85
14
95
47
0
0
52
1.00
3178--3242
9
7.0
10
85
15
95
47
0
0
52
1.00
3178--3242
13
5.2
13
94
5
116
47
0
0
52
1.00
7485--7528
2
22.5
2
95
4
81
50
0
0
50
1.00
8858--8925
36
1.9
36
90
3
111
33
13
11
41
1.81
9066--9196
67
1.9
70
84
4
178
29
18
12
40
1.87
9070--9203
34
3.9
35
72
12
107
28
17
12
41
1.87
9767--10109
131
2.6
134
79
8
362
24
32
18
23
1.97
10306--10349
21
2.1
21
83
8
54
38
2
0
59
1.10
11561--11588
8
3.5
8
100
0
56
10
0
0
89
0.49
11773--11823
21
2.5
21
79
17
54
35
19
1
43
1.63
12103--12153
21
2.5
21
79
17
54
35
19
1
43
1.63
11588--12192
330
1.8
330
99
0
1192
28
12
9
49
1.72
12179--12216
2
19.0
2
100
0
76
50
0
0
50
1.00
23250--23290
15
2.6
16
85
11
50
56
0
2
41
1.13
25077--25115
19
2.0
20
85
5
53
61
10
5
23
1.48
27866--28008
48
3.0
48
80
10
157
37
28
16
16
1.91
29153--29185
13
2.4
14
90
5
50
24
0
30
45
1.53
43078--43128
16
3.2
16
85
0
66
9
9
21
58
1.58
43084--43130
16
2.9
16
87
0
67
8
12
23
55
1.64
47404--47467
28
2.3
28
100
0
128
20
20
18
40
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49502--49613
7
16.0
7
100
0
224
14
42
14
28
1.84
50575--50612
19
2.0
19
100
0
76
21
21
21
36
1.95
50576--50619
19
2.5
17
89
10
63
22
18
18
40
1.91
52348--52400
21
2.5
20
82
8
61
24
0
1
73
0.93
56835--56916
36
2.3
36
82
4
103
37
14
9
37
1.79
56973--57429
39
11.8
39
91
0
668
29
18
16
35
1.93
59027--59066
21
2.0
20
85
5
53
25
2
0
72
0.97
60934--60994
31
2.0
31
93
0
104
39
14
21
24
1.91
62186--62239
20
2.7
19
75
8
63
33
31
18
16
1.93
62226--62341
20
5.6
21
70
16
64
38
21
17
22
1.93
62289--62566
20
13.6
20
70
10
116
38
23
18
19
1.93
62350--62563
40
5.2
41
86
3
297
38
23
18
20
1.93
63105--63195
20
4.6
20
78
9
96
50
17
17
14
1.78
63120--63196
19
3.9
19
76
8
82
49
18
19
12
1.79
63105--63199
40
2.4
40
82
7
122
50
16
18
13
1.78
63226--63320
33
2.8
33
91
1
145
12
22
21
44
1.85
63285--63348
20
3.1
21
78
17
80
10
23
17
48
1.78
65317--65383
21
3.2
21
66
6
55
23
35
20
19
1.95
65290--65383
42
2.2
42
81
7
102
23
34
21
21
1.97

Tables:   1

The End!