Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01005950.1 Hibiscus syriacus cultivar Beakdansim tig00013971_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 122822
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
Found at i:16595 original size:31 final size:31
Alignment explanation
Indices: 16560--16624 Score: 105
Period size: 31 Copynumber: 2.1 Consensus size: 31
16550 AAGTTGAAAG
*
16560 TTTAGGTATTAAAATC-GATCAAAACTGATAA
1 TTTAGGTATTAAAA-CAGACCAAAACTGATAA
16591 TTTAGGTATTAAAACAGACCAAAACTGATAA
1 TTTAGGTATTAAAACAGACCAAAACTGATAA
16622 TTT
1 TTT
16625 TAACGGTTGA
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 1 0.03
31 31 0.97
ACGTcount: A:0.45, C:0.11, G:0.12, T:0.32
Consensus pattern (31 bp):
TTTAGGTATTAAAACAGACCAAAACTGATAA
Found at i:17738 original size:2 final size:2
Alignment explanation
Indices: 17731--17770 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
17721 ATAAATGTAC
17731 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
17771 TGTTTAAGGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:27709 original size:20 final size:21
Alignment explanation
Indices: 27684--27735 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
27674 TTTTCCCAAT
*
27684 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
* **
27704 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATTAAGAAAA
27725 TCGCAATGCGA
1 TCGCAATGCGA
27736 TACTGACTAT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 11 0.42
21 15 0.58
ACGTcount: A:0.38, C:0.19, G:0.25, T:0.17
Consensus pattern (21 bp):
TCGCAATGCGAATTAAGAAAA
Found at i:27749 original size:20 final size:20
Alignment explanation
Indices: 27724--27837 Score: 113
Period size: 20 Copynumber: 5.7 Consensus size: 20
27714 AATTGGGAAA
*
27724 ATCGCAATGCGATACTGACT
1 ATCGCAACGCGATACTGACT
* *
27744 ATCGCAATGCGATACTTACT
1 ATCGCAACGCGATACTGACT
* * *
27764 ATCGCAATGCGATAAT-ACAAA
1 ATCGCAACGCGATACTGAC--T
*
27785 ATCGCAACGAGATACTGACT
1 ATCGCAACGCGATACTGACT
* *
27805 TTCGCAACGCGATTCTGACT
1 ATCGCAACGCGATACTGACT
*
27825 TTCGCAACGCGAT
1 ATCGCAACGCGAT
27838 TTACATAGCG
Statistics
Matches: 81, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
19 2 0.02
20 64 0.79
21 13 0.16
22 2 0.02
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (20 bp):
ATCGCAACGCGATACTGACT
Found at i:27768 original size:61 final size:61
Alignment explanation
Indices: 27721--27837 Score: 162
Period size: 61 Copynumber: 1.9 Consensus size: 61
27711 GCGAATTGGG
* * * * *
27721 AAAATCGCAATGCGATACTGACTATCGCAATGCGATACTTACTATCGCAATGCGATAATAC
1 AAAATCGCAACGAGATACTGACTATCGCAACGCGATACTGACTATCGCAACGCGATAATAC
* * *
27782 AAAATCGCAACGAGATACTGACTTTCGCAACGCGATTCTGACTTTCGCAACGCGAT
1 AAAATCGCAACGAGATACTGACTATCGCAACGCGATACTGACTATCGCAACGCGAT
27838 TTACATAGCG
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
61 48 1.00
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.24
Consensus pattern (61 bp):
AAAATCGCAACGAGATACTGACTATCGCAACGCGATACTGACTATCGCAACGCGATAATAC
Found at i:28413 original size:19 final size:19
Alignment explanation
Indices: 28353--28433 Score: 73
Period size: 19 Copynumber: 4.5 Consensus size: 19
28343 TTCGAGAATG
28353 AAAATCGCAACGCGGAAATA
1 AAAATCGCAACGC-GAAATA
** *
28373 ACTATCGCAA--CGAGAT-
1 AAAATCGCAACGCGAAATA
28389 --AATCGCAACGCGAAATA
1 AAAATCGCAACGCGAAATA
**
28406 AAAATCGCAACGCGAAACC
1 AAAATCGCAACGCGAAATA
28425 AAAATCGCA
1 AAAATCGCA
28434 TTGCGGTTTT
Statistics
Matches: 49, Mismatches: 7, Indels: 11
0.73 0.10 0.16
Matches are distributed among these distances:
14 7 0.14
16 5 0.10
17 4 0.08
18 1 0.02
19 24 0.49
20 8 0.16
ACGTcount: A:0.47, C:0.25, G:0.17, T:0.11
Consensus pattern (19 bp):
AAAATCGCAACGCGAAATA
Found at i:28451 original size:19 final size:19
Alignment explanation
Indices: 28429--28613 Score: 156
Period size: 19 Copynumber: 10.1 Consensus size: 19
28419 GAAACCAAAA
* *
28429 TCGCATTGCGGTTTTCATT
1 TCGCGTTGCGATTTTCATT
28448 TCGCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
*
28467 TCGCGTTGCGATTTTTATT
1 TCGCGTTGCGATTTTCATT
28486 TCGCGGTTGCGATTTTCATT
1 TCGC-GTTGCGATTTTCATT
*
28506 TCGCGTTGCGATTGTC---
1 TCGCGTTGCGATTTTCATT
* **
28522 T-G-GTCGCGATAGTCATT
1 TCGCGTTGCGATTTTCATT
28539 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
* * **
28553 TCTCGTTGTGATAGTCATTT
1 TCGCGTTGCGATTTTCA-TT
*
28573 TCGCGTTGCGATTCTCATT
1 TCGCGTTGCGATTTTCATT
*
28592 ATCTCGTTGCGATTTTCATT
1 -TCGCGTTGCGATTTTCATT
28612 TC
1 TC
28614 AACCAAAAGA
Statistics
Matches: 135, Mismatches: 18, Indels: 26
0.75 0.10 0.15
Matches are distributed among these distances:
14 19 0.14
15 1 0.01
16 3 0.02
17 3 0.02
18 1 0.01
19 60 0.44
20 48 0.36
ACGTcount: A:0.11, C:0.21, G:0.23, T:0.45
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:28503 original size:39 final size:38
Alignment explanation
Indices: 28429--28613 Score: 156
Period size: 33 Copynumber: 5.1 Consensus size: 38
28419 GAAACCAAAA
* *
28429 TCGCATTGCGGTTTTCATTTCGCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATTTCGCGTTGCGATTTTCATT
*
28467 TCGCGTTGCGATTTTTATTTCGCGGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATTTCGC-GTTGCGATTTTCATT
* * **
28506 TCGCGTTGCGATTGTC---T-G-GTCGCGATAGTCATT
1 TCGCGTTGCGATTTTCATTTCGCGTTGCGATTTTCATT
* * **
28539 TCGCGTTGCGA--TTC---TCTCGTTGTGATAGTCATTT
1 TCGCGTTGCGATTTTCATTTCGCGTTGCGATTTTCA-TT
* *
28573 TCGCGTTGCGATTCTCATTATCTCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT-TCGCGTTGCGATTTTCATT
28612 TC
1 TC
28614 AACCAAAAGA
Statistics
Matches: 121, Mismatches: 16, Indels: 19
0.78 0.10 0.12
Matches are distributed among these distances:
31 3 0.02
33 34 0.28
34 13 0.11
35 1 0.01
36 3 0.02
38 20 0.17
39 33 0.27
40 14 0.12
ACGTcount: A:0.11, C:0.21, G:0.23, T:0.45
Consensus pattern (38 bp):
TCGCGTTGCGATTTTCATTTCGCGTTGCGATTTTCATT
Found at i:28590 original size:20 final size:20
Alignment explanation
Indices: 28567--28612 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
28557 GTTGTGATAG
28567 TCATTTTCGCGTTGCGATTC
1 TCATTTTCGCGTTGCGATTC
* * *
28587 TCATTATCTCGTTGCGATTT
1 TCATTTTCGCGTTGCGATTC
28607 TCATTT
1 TCATTT
28613 CAACCAAAAG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.13, C:0.22, G:0.15, T:0.50
Consensus pattern (20 bp):
TCATTTTCGCGTTGCGATTC
Found at i:30675 original size:42 final size:42
Alignment explanation
Indices: 30615--30737 Score: 122
Period size: 42 Copynumber: 2.9 Consensus size: 42
30605 GCCCGAATCG
* * *
30615 CCTATCATCCCTCAAGAGTCCACTCCTATCGTTGAAGAGGCC
1 CCTATCATCCCTCAAGAGTCCACTCCCACCGTTCAAGAGGCC
* * *
30657 CCTATCATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCC
1 CCTATCATCCCTCAAGAGTCCACTCCCACCGTTCAAGAGGCC
* * ** * *
30699 ACTGTCATCGTTGAAGAGGTCC-CTCCCACCATTCAAGAG
1 CCTATCATCCCTCAAGA-GTCCACTCCCACCGTTCAAGAG
30738 CCCGATTCAC
Statistics
Matches: 66, Mismatches: 14, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
42 62 0.94
43 4 0.06
ACGTcount: A:0.23, C:0.37, G:0.18, T:0.23
Consensus pattern (42 bp):
CCTATCATCCCTCAAGAGTCCACTCCCACCGTTCAAGAGGCC
Found at i:30695 original size:21 final size:21
Alignment explanation
Indices: 30671--30737 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
30661 TCATTCCTCG
30671 AGAGTCCCCTCCCACCGTTCA
1 AGAGTCCCCTCCCACCGTTCA
* * ** * *
30692 AGAGGCCACTGTCATCGTTGA
1 AGAGTCCCCTCCCACCGTTCA
*
30713 AGAGGT-CCCTCCCACCATTCA
1 AGA-GTCCCCTCCCACCGTTCA
30734 AGAG
1 AGAG
30738 CCCGATTCAC
Statistics
Matches: 32, Mismatches: 13, Indels: 3
0.67 0.27 0.06
Matches are distributed among these distances:
20 1 0.03
21 30 0.94
22 1 0.03
ACGTcount: A:0.24, C:0.36, G:0.21, T:0.19
Consensus pattern (21 bp):
AGAGTCCCCTCCCACCGTTCA
Found at i:32558 original size:20 final size:20
Alignment explanation
Indices: 32533--32626 Score: 89
Period size: 20 Copynumber: 4.7 Consensus size: 20
32523 GATTATGTAT
32533 TATCGCGTTGCGAAAGTCAG
1 TATCGCGTTGCGAAAGTCAG
*
32553 TATCGCGTTGCGAAAGTAAG
1 TATCGCGTTGCGAAAGTCAG
* *** * *
32573 TATCTCGTTGCGATTTTTTAT
1 TATCGCGTTGCGA-AAGTCAG
* *
32594 TATCGCATTGCGATAGTCAG
1 TATCGCGTTGCGAAAGTCAG
*
32614 TATCGCATTGCGA
1 TATCGCGTTGCGA
32627 TTTTCCCAAT
Statistics
Matches: 60, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
20 47 0.78
21 13 0.22
ACGTcount: A:0.23, C:0.18, G:0.24, T:0.34
Consensus pattern (20 bp):
TATCGCGTTGCGAAAGTCAG
Found at i:32627 original size:20 final size:20
Alignment explanation
Indices: 32513--32627 Score: 88
Period size: 20 Copynumber: 5.7 Consensus size: 20
32503 CGCTTTGAAA
*
32513 ATCGCATTGCGATTATGT-ATT
1 ATCGCATTGCGA-TA-GTCAGT
* *
32534 ATCGCGTTGCGAAAGTCAGT
1 ATCGCATTGCGATAGTCAGT
* * *
32554 ATCGCGTTGCGAAAGTAAGT
1 ATCGCATTGCGATAGTCAGT
* * ** * *
32574 ATCTCGTTGCGATTTTTTATT
1 ATCGCATTGCGA-TAGTCAGT
32595 ATCGCATTGCGATAGTCAGT
1 ATCGCATTGCGATAGTCAGT
32615 ATCGCATTGCGAT
1 ATCGCATTGCGAT
32628 TTTCCCAATT
Statistics
Matches: 76, Mismatches: 16, Indels: 5
0.78 0.16 0.05
Matches are distributed among these distances:
19 2 0.03
20 50 0.66
21 24 0.32
ACGTcount: A:0.23, C:0.17, G:0.23, T:0.36
Consensus pattern (20 bp):
ATCGCATTGCGATAGTCAGT
Found at i:32645 original size:21 final size:21
Alignment explanation
Indices: 32616--32708 Score: 100
Period size: 20 Copynumber: 4.5 Consensus size: 21
32606 ATAGTCAGTA
32616 TCGCATTGCGATTTTCCCAAT
1 TCGCATTGCGATTTTCCCAAT
* * **
32637 TCGCGTTGCGA-TTTACTTAT
1 TCGCATTGCGATTTTCCCAAT
32657 TCGCATTGCGATTTTCCCAAT
1 TCGCATTGCGATTTTCCCAAT
* * **
32678 TCGCGTTGCGA-TTTACTTAT
1 TCGCATTGCGATTTTCCCAAT
32698 TCGCATTGCGA
1 TCGCATTGCGA
32709 ATTGGGAAAA
Statistics
Matches: 58, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
20 32 0.55
21 26 0.45
ACGTcount: A:0.17, C:0.25, G:0.18, T:0.40
Consensus pattern (21 bp):
TCGCATTGCGATTTTCCCAAT
Found at i:32646 original size:41 final size:41
Alignment explanation
Indices: 32555--32689 Score: 139
Period size: 41 Copynumber: 3.3 Consensus size: 41
32545 AAAGTCAGTA
* * * ** *
32555 TCGCGTTGCGAAAGTAAGTATCTCGTTGCGATTTT-TTATT
1 TCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCCCAAT
* *
32595 ATCGCATTGCGATAGTCAGTATCGCATTGCGATTTTCCCAAT
1 -TCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCCCAAT
* **
32637 TCGCGTTGCGAT-TTACTTATTCGCATTGCGATTTTCCCAAT
1 TCGCGTTGCGATAGTAAGTA-TCGCATTGCGATTTTCCCAAT
32678 TCGCGTTGCGAT
1 TCGCGTTGCGAT
32690 TTACTTATTC
Statistics
Matches: 79, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
40 3 0.04
41 74 0.94
42 2 0.03
ACGTcount: A:0.19, C:0.21, G:0.21, T:0.39
Consensus pattern (41 bp):
TCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCCCAAT
Found at i:32690 original size:41 final size:41
Alignment explanation
Indices: 32616--32708 Score: 186
Period size: 41 Copynumber: 2.3 Consensus size: 41
32606 ATAGTCAGTA
32616 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
32657 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
32698 TCGCATTGCGA
1 TCGCATTGCGA
32709 ATTGGGAAAA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.17, C:0.25, G:0.18, T:0.40
Consensus pattern (41 bp):
TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
Found at i:35796 original size:26 final size:25
Alignment explanation
Indices: 35758--35825 Score: 73
Period size: 26 Copynumber: 2.6 Consensus size: 25
35748 CATTTTAAAT
* *
35758 TTAATAATATTAAACTATTATTTTTA
1 TTAATAATATTAAAATATT-TTTATA
* *
35784 TTAATTATTTTAAAATATTTTTATA
1 TTAATAATATTAAAATATTTTTATA
35809 TTTAATAATATATAAAA
1 -TTAATAATAT-TAAAA
35826 AAATCCATGT
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
25 5 0.15
26 24 0.71
27 5 0.15
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.53
Consensus pattern (25 bp):
TTAATAATATTAAAATATTTTTATA
Found at i:37286 original size:4 final size:4
Alignment explanation
Indices: 37260--38342 Score: 1821
Period size: 4 Copynumber: 271.5 Consensus size: 4
37250 GAAATATTTT
* * * *
37260 ATAC ATGC ATGC ATGC ATGC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
37308 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
37356 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
37404 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
37452 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
37500 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
37548 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC GTAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
37596 GTAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC GTAC ATAC ATAC GTAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * *
37644 GTAC ATAC ATAC GTAC ATAC ATAC ATAC GTAC GTAC GTAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
37692 GTAC GTAC ATAC ATAC ATAC ATAC CTAC ATAC ATAC ATAC CTAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
37740 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
37788 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
37836 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
37884 ATAC ATAC ATAC ATAC ATAC ATAC CTAC ATAC ATAC -TAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
37931 ATAC --AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
37977 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
38025 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * * * *
38073 ATAC ATAC ATAC ATGC ATGC ATGC ATGC ATGC ATGC ATGC ATGC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * *
38121 ATGC ATGC ATGC ATGC ATGC ATGC ATGC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
38169 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
38217 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
38265 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
38313 ATAC ATGC ATGC ATAC ATAC ATAC ATAC AT
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT
38343 TACAGCTTAG
Statistics
Matches: 1052, Mismatches: 24, Indels: 6
0.97 0.02 0.01
Matches are distributed among these distances:
2 2 0.00
3 3 0.00
4 1047 1.00
ACGTcount: A:0.47, C:0.25, G:0.03, T:0.25
Consensus pattern (4 bp):
ATAC
Found at i:43889 original size:354 final size:354
Alignment explanation
Indices: 43233--43939 Score: 1153
Period size: 354 Copynumber: 2.0 Consensus size: 354
43223 CCTAATGTTC
*
43233 ATAGTCCAACAACTAATTTACGTAACGACTTCAACTTATTAAGCACACAAAGTTGGGGCAATGAC
1 ATAGTCAAACAACTAATTTACGTAACGACTTCAACTTATTAAGCACACAAAGTTGGGGCAATGAC
* *
43298 TTAGGTGCATCATCGTCTTCGATGCCAAGGTATTTTTACGTAGTTAGCATGGACTTTGACATGAA
66 TTAGGTGCATCATCGTCTTCGATGCCAAGGTATTCTTACGTAGTTAGCATGGAATTTGACATGAA
* *
43363 TCTGCAACCATCACAATGTGCAACGTACAATCCATACAGTATTGGTGTAGATGCATTATCTTCTC
131 TCTACAACCATCACAATGTGCAACGTACAATCCATACAATATTGGTGTAGATGCATTATCTTCTC
* *
43428 AGCAAGAAATGAGGTTGCAGGAACATAAAGCATTTAACCCATTCGATGATTTCTCAGTATCTATG
196 AGCAAGAAATAAGGTTGCAGGAACATAAAGCATTTAACCCATTCGATGATTTCTCAATATCTATG
* * *** * *
43493 GGGAGACATTATTGTGTTAGTATTGTCGACCTTGATCTTAGTAGTATAGTTTGTAAGCGTTATTG
261 GGGAGACATTATTGTGTTAGTACTATCGACCTTGATCTTAGTAGTATAGTCCATAAGCATTATCG
*
43558 TGAGCGGTCTCGTGATTGATGCACAACTG
326 TGAGCAGTCTCGTGATTGATGCACAACTG
* *
43587 ATAGTCAAACAACTAATTTACGTAATGACTTCAACTTATTAAGTACACAAAGTTGGGGCAATGAC
1 ATAGTCAAACAACTAATTTACGTAACGACTTCAACTTATTAAGCACACAAAGTTGGGGCAATGAC
* * * *
43652 TTGGGTGCATCATCGTCTTTGATGCCAAGGTATTCTTGCGTAGTTAGCTTGGAATTTGACATGAA
66 TTAGGTGCATCATCGTCTTCGATGCCAAGGTATTCTTACGTAGTTAGCATGGAATTTGACATGAA
* *
43717 TCTACAACCATCACAATGTGCAACGTTCAATCCATACAATATTGGTGTGGATGCATTATCTTCTC
131 TCTACAACCATCACAATGTGCAACGTACAATCCATACAATATTGGTGTAGATGCATTATCTTCTC
*
43782 AGCAAGAAATAAGGTTGCAGGAACATAAAGCGTTTAACCCATTCGATGATTTCTCAATATCTATG
196 AGCAAGAAATAAGGTTGCAGGAACATAAAGCATTTAACCCATTCGATGATTTCTCAATATCTATG
* * * *
43847 GGGAGACATTATTGTGTTGGTACTATCGACTTTGATCTTAGTAGTATGGTCCATAAGCATTCTCG
261 GGGAGACATTATTGTGTTAGTACTATCGACCTTGATCTTAGTAGTATAGTCCATAAGCATTATCG
*
43912 TGAGTAGTCTCGTGATTGATGCACAACT
326 TGAGCAGTCTCGTGATTGATGCACAACT
43940 AATACTCCTA
Statistics
Matches: 324, Mismatches: 29, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
354 324 1.00
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.32
Consensus pattern (354 bp):
ATAGTCAAACAACTAATTTACGTAACGACTTCAACTTATTAAGCACACAAAGTTGGGGCAATGAC
TTAGGTGCATCATCGTCTTCGATGCCAAGGTATTCTTACGTAGTTAGCATGGAATTTGACATGAA
TCTACAACCATCACAATGTGCAACGTACAATCCATACAATATTGGTGTAGATGCATTATCTTCTC
AGCAAGAAATAAGGTTGCAGGAACATAAAGCATTTAACCCATTCGATGATTTCTCAATATCTATG
GGGAGACATTATTGTGTTAGTACTATCGACCTTGATCTTAGTAGTATAGTCCATAAGCATTATCG
TGAGCAGTCTCGTGATTGATGCACAACTG
Found at i:48350 original size:65 final size:65
Alignment explanation
Indices: 48190--48350 Score: 195
Period size: 64 Copynumber: 2.5 Consensus size: 65
48180 TTGTTTAAGG
* * * ** *
48190 TGCATCGATGCACATGCAGTGCATCGATGCAT--GAATTTAAATAGAAAACATCGAATATGATTT
1 TGCATCGATGCATAAGGAGTGCATCGATGCATCCCCA-TTAAATAGAAAACATCGAATAGGATTT
48253 A
65 A
*
48254 TGCATCGATGCATAAGGAGTGCATCGATGCATCCCCATTAAATA-CAAACATCGAATAGGATTTA
1 TGCATCGATGCATAAGGAGTGCATCGATGCATCCCCATTAAATAGAAAACATCGAATAGGATTTA
*
48318 TGCATCGATGCAT-GGTGTAGTGCATCGATGCAT
1 TGCATCGATGCATAAG-G-AGTGCATCGATGCAT
48351 ACCTTCATTA
Statistics
Matches: 85, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
63 1 0.01
64 61 0.72
65 22 0.26
66 1 0.01
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (65 bp):
TGCATCGATGCATAAGGAGTGCATCGATGCATCCCCATTAAATAGAAAACATCGAATAGGATTTA
Found at i:48666 original size:18 final size:19
Alignment explanation
Indices: 48629--48667 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
48619 TGTGGTTATA
*
48629 ATTATATGTGATTATCTGT
1 ATTATATGTGATTATATGT
*
48648 ATTATAT-TGATTGTATGT
1 ATTATATGTGATTATATGT
48666 AT
1 AT
48668 GCATGACTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.28, C:0.03, G:0.15, T:0.54
Consensus pattern (19 bp):
ATTATATGTGATTATATGT
Found at i:49753 original size:21 final size:21
Alignment explanation
Indices: 49727--49789 Score: 81
Period size: 21 Copynumber: 3.0 Consensus size: 21
49717 GTCGAGGGTT
*
49727 TCATAGGTCATTCGGGACAAC
1 TCATAGGTCCTTCGGGACAAC
* *
49748 TCATAGGTCCTTCGAGACAAAT
1 TCATAGGTCCTTCGGGAC-AAC
*
49770 TCACAGGTCCTTCGGGACAA
1 TCATAGGTCCTTCGGGACAA
49790 ATTTCATATG
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
21 18 0.50
22 18 0.50
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.24
Consensus pattern (21 bp):
TCATAGGTCCTTCGGGACAAC
Found at i:49780 original size:22 final size:22
Alignment explanation
Indices: 49726--49797 Score: 92
Period size: 22 Copynumber: 3.3 Consensus size: 22
49716 AGTCGAGGGT
*
49726 TTCATAGGTCATTCGGGAC-AA
1 TTCATAGGTCCTTCGGGACAAA
* *
49747 CTCATAGGTCCTTCGAGACAAA
1 TTCATAGGTCCTTCGGGACAAA
*
49769 TTCACAGGTCCTTCGGGACAAA
1 TTCATAGGTCCTTCGGGACAAA
49791 TTTCATA
1 -TTCATA
49798 TGCCACTCAA
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
21 16 0.38
22 21 0.50
23 5 0.12
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (22 bp):
TTCATAGGTCCTTCGGGACAAA
Found at i:51415 original size:2 final size:2
Alignment explanation
Indices: 51408--51445 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
51398 AAAGTTAAAG
51408 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
51446 GAAAGTGGAG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:53115 original size:65 final size:66
Alignment explanation
Indices: 53034--53159 Score: 195
Period size: 65 Copynumber: 1.9 Consensus size: 66
53024 CTGCATGAAT
*
53034 TTAAATAGAAAACATCGAATATGATTTATGCATCGATGCATAAGG-G-AGTGCATCGATGCATCC
1 TTAAATAGAAAACATCGAATAGGATTTATGCATCGATGCAT--GGTGTAGTGCATCGATGCATCC
53097 CCA
64 CCA
*
53100 TTAAATA-CAAACATCGAATAGGATTTATGCATCGATGCATGGTGTAGTGCATCGATGCAT
1 TTAAATAGAAAACATCGAATAGGATTTATGCATCGATGCATGGTGTAGTGCATCGATGCAT
53160 ACCTTCATTA
Statistics
Matches: 56, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
63 2 0.04
64 1 0.02
65 46 0.82
66 7 0.12
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.28
Consensus pattern (66 bp):
TTAAATAGAAAACATCGAATAGGATTTATGCATCGATGCATGGTGTAGTGCATCGATGCATCCCC
A
Found at i:53737 original size:239 final size:241
Alignment explanation
Indices: 53313--53796 Score: 847
Period size: 239 Copynumber: 2.0 Consensus size: 241
53303 TGATTCAAAC
53313 AACGAGGCCCAGGTGAGTGCTACTAGTGATAGTAGTGTTTAATGGAAATAAGACTTGCGATGAGT
1 AACGAGGCCCAGGTGAGTGCTACTAGTGATAGTAGTGTTTAATGGAAATAAGACTTGCGATGAG-
53378 CTATTTCCTAGAGTAATATATGAAGTCATGGACATTGATTATGTGTGGTTATAATTATATGTGAT
65 -T-TTTCCTAGAGTAATATATGAAGTCATGGACATTGATTATGTGTGGTTATAATTATATGTGAT
53443 TATCGTATTACATTGATTATATGTATGCATGACTAAAGATAAGGATATGCTTAGTATATGCTATA
128 TATCGTATTACATTGATTATATGTATGCATGACTAAAGATAAGGATATGCTTAGTATATGCTATA
53508 TGATGT-GTAAGACTTTAATATGTAATAATGGAAGAACATGAAATAAGTT
193 TGAT-TAGTAAGACTTTAATATGTAATAATGGAAGAACATGAAATAAGTT
53557 AACGAGG-CCAGGTGAGTGCATACTAGTGATATGTAGTGTTTAATGGAAAT-AGACTTGCGATGA
1 AACGAGGCCCAGGTGAGTGC-TACTAGTGATA-GTAGTGTTTAATGGAAATAAGACTTGCGATGA
53620 G-TTTCCTAGAGTAATATGCATGAAGTCATGGACA-TGATTATGTGTGGTTATAA-TATATGTGA
64 GTTTTCCTAGAGTAATAT--ATGAAGTCATGGACATTGATTATGTGTGGTTATAATTATATGTGA
53682 TTATCGT-TTACATTGATTATATGTATGCATGACTAAAGATAAGGATATGCTTAGTATATGCTAT
127 TTATCGTATTACATTGATTATATGTATGCATGACTAAAGATAAGGATATGCTTAGTATATGCTAT
53746 ATGATTAGTAAGACTTTAATATGTAATAATGGAAGAACATGAAATAAGTT
192 ATGATTAGTAAGACTTTAATATGTAATAATGGAAGAACATGAAATAAGTT
53796 A
1 A
53797 TATGATAGAG
Statistics
Matches: 235, Mismatches: 0, Indels: 15
0.94 0.00 0.06
Matches are distributed among these distances:
238 1 0.00
239 106 0.45
240 32 0.14
241 19 0.08
242 15 0.06
243 12 0.05
244 32 0.14
245 18 0.08
ACGTcount: A:0.35, C:0.08, G:0.22, T:0.35
Consensus pattern (241 bp):
AACGAGGCCCAGGTGAGTGCTACTAGTGATAGTAGTGTTTAATGGAAATAAGACTTGCGATGAGT
TTTCCTAGAGTAATATATGAAGTCATGGACATTGATTATGTGTGGTTATAATTATATGTGATTAT
CGTATTACATTGATTATATGTATGCATGACTAAAGATAAGGATATGCTTAGTATATGCTATATGA
TTAGTAAGACTTTAATATGTAATAATGGAAGAACATGAAATAAGTT
Found at i:56422 original size:13 final size:15
Alignment explanation
Indices: 56387--56425 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
56377 AAACATTAAT
56387 ATAATAATAATATAA
1 ATAATAATAATATAA
56402 ATAAATAATAA-ATAA
1 AT-AATAATAATATAA
56417 AT-ATAATAA
1 ATAATAATAA
56426 GATTGAGTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 7 0.30
15 8 0.35
16 8 0.35
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (15 bp):
ATAATAATAATATAA
Found at i:57589 original size:22 final size:21
Alignment explanation
Indices: 57564--57607 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 21
57554 GGTAGTGGCT
57564 TAGTAGGT-AGATAATGGTAGGG
1 TAGT-GGTGAGATAATGGT-GGG
57586 TAGTGGTGAGATAATGGTGGG
1 TAGTGGTGAGATAATGGTGGG
57607 T
1 T
57608 GGTTGGATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 7 0.33
22 14 0.67
ACGTcount: A:0.27, C:0.00, G:0.43, T:0.30
Consensus pattern (21 bp):
TAGTGGTGAGATAATGGTGGG
Found at i:57639 original size:7 final size:7
Alignment explanation
Indices: 57627--57678 Score: 50
Period size: 7 Copynumber: 6.9 Consensus size: 7
57617 AGGGCCTATA
57627 AAAAAAT
1 AAAAAAT
57634 AAAAAAT
1 AAAAAAT
57641 AAATAAAT
1 AAA-AAAT
57649 AATAATAAT
1 AA-AA-AAT
*
57658 AAATAAT
1 AAAAAAT
*
57665 AATATAAT
1 AA-AAAAT
57673 AAAAAA
1 AAAAAA
57679 ATTTGTAGAC
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
7 18 0.46
8 15 0.38
9 6 0.15
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (7 bp):
AAAAAAT
Found at i:57660 original size:13 final size:13
Alignment explanation
Indices: 57642--57668 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
57632 ATAAAAAATA
57642 AATAAATAATAAT
1 AATAAATAATAAT
57655 AATAAATAATAAT
1 AATAAATAATAAT
57668 A
1 A
57669 TAATAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (13 bp):
AATAAATAATAAT
Found at i:58045 original size:67 final size:66
Alignment explanation
Indices: 57956--58082 Score: 193
Period size: 67 Copynumber: 1.9 Consensus size: 66
57946 GTTTTTTTTT
*
57956 GTGTTTCAAGAGAAACTATCTCAAGGGAAACAAAATTTTGTTTCAAGAGAAACATAT-TCAAAGA
1 GTGTTTCAAGAGAAACTATCTCAAGAGAAACAAAA-TTTGTTTCAAGAGAAAC-TATCTCAAAGA
58020 TTG
64 TTG
* * *
58023 GTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTGTTTCAAGGGAAACTATCTCAA
1 GTGTTTCAAGAGAAACTATCTCAAGAGAAACAAAATTTGTTTCAAGAGAAACTATCTCAA
58083 GAGAGACAAA
Statistics
Matches: 55, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
65 3 0.05
66 20 0.36
67 32 0.58
ACGTcount: A:0.40, C:0.13, G:0.19, T:0.28
Consensus pattern (66 bp):
GTGTTTCAAGAGAAACTATCTCAAGAGAAACAAAATTTGTTTCAAGAGAAACTATCTCAAAGATT
G
Found at i:58074 original size:36 final size:36
Alignment explanation
Indices: 58024--58137 Score: 201
Period size: 36 Copynumber: 3.1 Consensus size: 36
58014 CAAAGATTGG
58024 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATT
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATT
* *
58060 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATT
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATT
58096 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTT
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA-TT
58133 TGTTT
1 TGTTT
58138 TGAGTAAATT
Statistics
Matches: 73, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
36 66 0.90
37 7 0.10
ACGTcount: A:0.39, C:0.14, G:0.19, T:0.27
Consensus pattern (36 bp):
TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATT
Found at i:58105 original size:21 final size:21
Alignment explanation
Indices: 58043--58107 Score: 61
Period size: 21 Copynumber: 3.4 Consensus size: 21
58033 AGAAACTGTC
58043 TCAAGAGAGACAAAATTTGTT
1 TCAAGAGAGACAAAATTTGTT
* * *
58064 TCAAG-G-G---AAA-CTATC
1 TCAAGAGAGACAAAATTTGTT
58079 TCAAGAGAGACAAAATTTGTT
1 TCAAGAGAGACAAAATTTGTT
58100 TCAAGAGA
1 TCAAGAGA
58108 AACTGTCTCA
Statistics
Matches: 32, Mismatches: 6, Indels: 12
0.64 0.12 0.24
Matches are distributed among these distances:
15 7 0.22
16 4 0.12
17 1 0.03
19 1 0.03
20 4 0.12
21 15 0.47
ACGTcount: A:0.43, C:0.12, G:0.20, T:0.25
Consensus pattern (21 bp):
TCAAGAGAGACAAAATTTGTT
Found at i:58153 original size:37 final size:35
Alignment explanation
Indices: 58031--58162 Score: 153
Period size: 36 Copynumber: 3.7 Consensus size: 35
58021 TGGTGTTTCA
58031 AGAGAAACT-GTCTCAAGAGAGACAAAATTTGTTT
1 AGAGAAACTAGTCTCAAGAGAGACAAAATTTGTTT
*
58065 CAAGGGAAACTA-TCTCAAGAGAGACAAAATTTGTTT
1 --AGAGAAACTAGTCTCAAGAGAGACAAAATTTGTTT
58101 CAAGAGAAACT-GTCTCAAGAGAGACAAAACTTTGTTT
1 --AGAGAAACTAGTCTCAAGAGAGACAAAA-TTTGTTT
* * *
58138 TGAGTAAATTAGTCTCAAGCGAGAC
1 AGAG-AAACTAGTCTCAAGAGAGAC
58163 GACCCCTTGT
Statistics
Matches: 86, Mismatches: 5, Indels: 9
0.86 0.05 0.09
Matches are distributed among these distances:
35 3 0.03
36 63 0.73
37 20 0.23
ACGTcount: A:0.40, C:0.14, G:0.20, T:0.25
Consensus pattern (35 bp):
AGAGAAACTAGTCTCAAGAGAGACAAAATTTGTTT
Found at i:59056 original size:32 final size:33
Alignment explanation
Indices: 58983--59058 Score: 84
Period size: 32 Copynumber: 2.4 Consensus size: 33
58973 TTCATATCTG
*
58983 GATGTTGAATC-CCCAAAGATACCCCAATATTC
1 GATGTTGAATCTCCCAAAGATACCCCAACATTC
* * * * *
59015 GATGATGAATCTCCGAAA-ATGCCTCAACATTT
1 GATGTTGAATCTCCCAAAGATACCCCAACATTC
59047 GATGTTGAATCT
1 GATGTTGAATCT
59059 TGAAGATGCC
Statistics
Matches: 36, Mismatches: 7, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
32 31 0.86
33 5 0.14
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.29
Consensus pattern (33 bp):
GATGTTGAATCTCCCAAAGATACCCCAACATTC
Found at i:60152 original size:10 final size:10
Alignment explanation
Indices: 60137--60168 Score: 55
Period size: 10 Copynumber: 3.1 Consensus size: 10
60127 TTATCTTTAC
60137 TTTTTCTTTT
1 TTTTTCTTTT
60147 TTTTTCTCTTT
1 TTTTTCT-TTT
60158 TTTTTCTTTT
1 TTTTTCTTTT
60168 T
1 T
60169 GTTCTGATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 11 0.52
11 10 0.48
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (10 bp):
TTTTTCTTTT
Found at i:60161 original size:21 final size:23
Alignment explanation
Indices: 60119--60168 Score: 68
Period size: 21 Copynumber: 2.2 Consensus size: 23
60109 TTTTCTCTCT
60119 TTTTTATTTTATCTTTACTTTTTC
1 TTTTTATTTTATCTTTA-TTTTTC
*
60143 TTTTT-TTTTCTCTTT-TTTTTC
1 TTTTTATTTTATCTTTATTTTTC
60164 TTTTT
1 TTTTT
60169 GTTCTGATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
21 11 0.44
23 9 0.36
24 5 0.20
ACGTcount: A:0.06, C:0.12, G:0.00, T:0.82
Consensus pattern (23 bp):
TTTTTATTTTATCTTTATTTTTC
Found at i:62069 original size:20 final size:21
Alignment explanation
Indices: 62044--62084 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
62034 TGCAAATGAT
62044 GAAAATAAAATGAAAT-AAAA
1 GAAAATAAAATGAAATGAAAA
*
62064 GAAAATAAAATTAAATGAAAA
1 GAAAATAAAATGAAATGAAAA
62085 TGTTAGTAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 15 0.79
21 4 0.21
ACGTcount: A:0.73, C:0.00, G:0.10, T:0.17
Consensus pattern (21 bp):
GAAAATAAAATGAAATGAAAA
Found at i:64413 original size:5 final size:5
Alignment explanation
Indices: 64384--64440 Score: 80
Period size: 5 Copynumber: 11.2 Consensus size: 5
64374 GGGCCTACAA
*
64384 ATAAT AATAAT AATAA- ATAAC ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
1 ATAAT -ATAAT -ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
64435 ATAAT A
1 ATAAT A
64441 AAAAAAATTG
Statistics
Matches: 49, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
4 4 0.08
5 35 0.71
6 10 0.20
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (5 bp):
ATAAT
Found at i:71191 original size:17 final size:17
Alignment explanation
Indices: 71143--71193 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 17
71133 ATAATGTTAA
* *
71143 AATTTATTTAAATTATT
1 AATTTGTTTAAGTTATT
* *
71160 AATTAAGTTTTAGTTATT
1 AATT-TGTTTAAGTTATT
71178 AATTTGTTTAAGTTAT
1 AATTTGTTTAAGTTAT
71194 CATTCAATAA
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
17 14 0.52
18 13 0.48
ACGTcount: A:0.35, C:0.00, G:0.08, T:0.57
Consensus pattern (17 bp):
AATTTGTTTAAGTTATT
Found at i:71668 original size:21 final size:21
Alignment explanation
Indices: 71644--71683 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
71634 TTTTTCTAAC
71644 AAATTAACTTAGGGCTTTTAA
1 AAATTAACTTAGGGCTTTTAA
* *
71665 AAATTAACTTTGGGGTTTT
1 AAATTAACTTAGGGCTTTT
71684 TAAAGTAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.42
Consensus pattern (21 bp):
AAATTAACTTAGGGCTTTTAA
Found at i:71687 original size:22 final size:21
Alignment explanation
Indices: 71635--71687 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 21
71625 CAAAGGATAT
71635 TTTTCTAACAAATTAACTTAGGG
1 TTTT-TAA-AAATTAACTTAGGG
* *
71658 CTTTTAAAAATTAACTTTGGGG
1 TTTTTAAAAATTAAC-TTAGGG
71680 TTTTTAAA
1 TTTTTAAA
71688 GTAATAACGC
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
21 8 0.31
22 15 0.58
23 3 0.12
ACGTcount: A:0.34, C:0.09, G:0.13, T:0.43
Consensus pattern (21 bp):
TTTTTAAAAATTAACTTAGGG
Found at i:75751 original size:28 final size:29
Alignment explanation
Indices: 75719--75773 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
75709 AAAGTAGGAA
*
75719 TAAATTTAAGA-TTTTTATATTTATAAAT
1 TAAATTTAAGATTTTTTAAATTTATAAAT
*
75747 TAAATTTAATATTTTTTAAATTTATAA
1 TAAATTTAAGATTTTTTAAATTTATAA
75774 TTCGATGATC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 10 0.42
29 14 0.58
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.55
Consensus pattern (29 bp):
TAAATTTAAGATTTTTTAAATTTATAAAT
Found at i:77269 original size:37 final size:36
Alignment explanation
Indices: 77207--77326 Score: 172
Period size: 35 Copynumber: 3.3 Consensus size: 36
77197 ATCCCATTAT
* *
77207 CATTTTTC-AACAAACATCTACCAAACTTTGAAAAAC
1 CATTTTTCAAAGAAACATTTACCAAACTTTG-AAAAC
* *
77243 TATTTTTCAAAGAAACATTTATCAAACTTTGAAAAC
1 CATTTTTCAAAGAAACATTTACCAAACTTTGAAAAC
77279 CA-TTTTCAAAGAAACATTTACCAAACTTTGAAAAC
1 CATTTTTCAAAGAAACATTTACCAAACTTTGAAAAC
77314 CATTTTTTCAAAG
1 CA-TTTTTCAAAG
77327 TTGGTTACCA
Statistics
Matches: 75, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
35 34 0.45
36 13 0.17
37 28 0.37
ACGTcount: A:0.43, C:0.19, G:0.05, T:0.33
Consensus pattern (36 bp):
CATTTTTCAAAGAAACATTTACCAAACTTTGAAAAC
Found at i:77282 original size:21 final size:21
Alignment explanation
Indices: 77258--77318 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 21
77248 TTCAAAGAAA
77258 CATTTATCAAACTTTGAAAAC
1 CATTTATCAAACTTTGAAAAC
77279 CATTT-TCAAA----G-AAA-
1 CATTTATCAAACTTTGAAAAC
*
77293 CATTTACCAAACTTTGAAAAC
1 CATTTATCAAACTTTGAAAAC
77314 CATTT
1 CATTT
77319 TTTCAAAGTT
Statistics
Matches: 32, Mismatches: 1, Indels: 14
0.68 0.02 0.30
Matches are distributed among these distances:
14 5 0.16
15 7 0.22
16 1 0.03
19 1 0.03
20 8 0.25
21 10 0.31
ACGTcount: A:0.43, C:0.20, G:0.05, T:0.33
Consensus pattern (21 bp):
CATTTATCAAACTTTGAAAAC
Found at i:81842 original size:183 final size:185
Alignment explanation
Indices: 81545--81919 Score: 623
Period size: 183 Copynumber: 2.0 Consensus size: 185
81535 ATAAAAATTA
* *
81545 AATATTTTTTAATTCAAAAAAAAGTTTATAATTAATTTAAATAATATATAATTATAAAATAAAAA
1 AATATTTTTTAATTCAAAAAAAAGTTTACAAATAATTTAAATAATATATAATTATAAAATAAAAA
* * *
81610 TTTTAGATAAATTTTTTAATTAATTAATATTGATTTAAGTTTAAAAGTTATTGGATCTTAAATTA
66 ATTTAGATAAATTTTTTAATTAATTAATATTGATTTAAATTTAAAAGTTATTAGATCTTAAATTA
81675 TTAATTGGGTTTTAAAT-AGTTTGGGCTT-AGCCCATATGTTATATATAATATATAT
131 TTAATTGGGTTTTAAATGA-TTTGGG-TTGAGCCCATATGTTATATATAATATATAT
*
81730 AATATTTTTTAATT-AAAAAACAGTTTACAAATAATTTAAATAATATATAATTATAAAATAAAAA
1 AATATTTTTTAATTCAAAAAAAAGTTTACAAATAATTTAAATAATATATAATTATAAAATAAAAA
* *
81794 ATTTATAT-AATTTTTTAATTAATTAATATTGATTTAAATTTAAAAGTTATTAGATCTTCAATTA
66 ATTTAGATAAATTTTTTAATTAATTAATATTGATTTAAATTTAAAAGTTATTAGATCTTAAATTA
*
81858 TTAATTGGGTTTTAAATGATTTGGGTTGAGCCCATATGTTATATATAATATATTT
131 TTAATTGGGTTTTAAATGATTTGGGTTGAGCCCATATGTTATATATAATATATAT
81913 AATATTT
1 AATATTT
81920 AAAATTTAAT
Statistics
Matches: 179, Mismatches: 9, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
182 2 0.01
183 109 0.61
184 54 0.30
185 14 0.08
ACGTcount: A:0.43, C:0.03, G:0.08, T:0.46
Consensus pattern (185 bp):
AATATTTTTTAATTCAAAAAAAAGTTTACAAATAATTTAAATAATATATAATTATAAAATAAAAA
ATTTAGATAAATTTTTTAATTAATTAATATTGATTTAAATTTAAAAGTTATTAGATCTTAAATTA
TTAATTGGGTTTTAAATGATTTGGGTTGAGCCCATATGTTATATATAATATATAT
Found at i:82637 original size:36 final size:36
Alignment explanation
Indices: 82567--82679 Score: 167
Period size: 35 Copynumber: 3.2 Consensus size: 36
82557 TCCCATTATC
* *
82567 ATTTTTC-AACAAACATCTACCAAACTTTGAAAAACT
1 ATTTTTCAAAGAAACATTTACCAAACTTTG-AAAACT
* *
82603 ATTTTTCAAAGAAACATTTATCAAACTTTGAAAACC
1 ATTTTTCAAAGAAACATTTACCAAACTTTGAAAACT
82639 A-TTTTCAAAGAAACATTTACCAAACTTTGAAAACT
1 ATTTTTCAAAGAAACATTTACCAAACTTTGAAAACT
82674 ATTTTT
1 ATTTTT
82680 TAAAAGTTGG
Statistics
Matches: 69, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
35 33 0.48
36 17 0.25
37 19 0.28
ACGTcount: A:0.43, C:0.18, G:0.04, T:0.35
Consensus pattern (36 bp):
ATTTTTCAAAGAAACATTTACCAAACTTTGAAAACT
Found at i:82641 original size:21 final size:21
Alignment explanation
Indices: 82617--82677 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
82607 TTCAAAGAAA
82617 CATTTATCAAACTTTGAAAAC
1 CATTTATCAAACTTTGAAAAC
82638 CATTT-TCAAA----G-AAA-
1 CATTTATCAAACTTTGAAAAC
*
82652 CATTTACCAAACTTTGAAAAC
1 CATTTATCAAACTTTGAAAAC
*
82673 TATTT
1 CATTT
82678 TTTAAAAGTT
Statistics
Matches: 31, Mismatches: 2, Indels: 14
0.66 0.04 0.30
Matches are distributed among these distances:
14 5 0.16
15 7 0.23
16 1 0.03
19 1 0.03
20 8 0.26
21 9 0.29
ACGTcount: A:0.43, C:0.18, G:0.05, T:0.34
Consensus pattern (21 bp):
CATTTATCAAACTTTGAAAAC
Found at i:83734 original size:24 final size:24
Alignment explanation
Indices: 83702--83749 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
83692 GAAGCTCAAG
*
83702 ATTTTCTTGCCATTTTGATTGTAC
1 ATTTTCTTGCCAATTTGATTGTAC
*
83726 ATTTTCTTGCTAATTTGATTGTAC
1 ATTTTCTTGCCAATTTGATTGTAC
83750 GAGATGCGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.19, C:0.15, G:0.12, T:0.54
Consensus pattern (24 bp):
ATTTTCTTGCCAATTTGATTGTAC
Found at i:83977 original size:33 final size:33
Alignment explanation
Indices: 83934--84001 Score: 118
Period size: 33 Copynumber: 2.1 Consensus size: 33
83924 TAAATTATTA
*
83934 TTATTATTCAAAAAGTTTATCTGAATATTTCCT
1 TTATTATTCAAAAAGTTTATCCGAATATTTCCT
*
83967 TTATTCTTCAAAAAGTTTATCCGAATATTTCCT
1 TTATTATTCAAAAAGTTTATCCGAATATTTCCT
84000 TT
1 TT
84002 CTTTAGAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.31, C:0.15, G:0.06, T:0.49
Consensus pattern (33 bp):
TTATTATTCAAAAAGTTTATCCGAATATTTCCT
Found at i:88182 original size:20 final size:20
Alignment explanation
Indices: 88157--88208 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 20
88147 TTTTCTCAAT
*
88157 TCGCAATGCGAATAAGTAAA
1 TCGCAATGCGAATAAGAAAA
* **
88177 TCGCAACGCGAAATGGGAAAA
1 TCGCAATGCG-AATAAGAAAA
88198 TCGCAATGCGA
1 TCGCAATGCGA
88209 TACTGACTAT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
20 10 0.38
21 16 0.62
ACGTcount: A:0.40, C:0.19, G:0.25, T:0.15
Consensus pattern (20 bp):
TCGCAATGCGAATAAGAAAA
Found at i:88222 original size:20 final size:20
Alignment explanation
Indices: 88197--88331 Score: 130
Period size: 20 Copynumber: 6.7 Consensus size: 20
88187 AAATGGGAAA
88197 ATCGCAATGCGATACTGACT
1 ATCGCAATGCGATACTGACT
88217 ATCGCAATGCGATACTGACT
1 ATCGCAATGCGATACTGACT
* *
88237 ATCGCAATGCGATAAT-ACAAA
1 ATCGCAATGCGATACTGAC--T
* *
88258 ATCGCAACGAGATACTGACT
1 ATCGCAATGCGATACTGACT
* * *
88278 TTCGCAACGCGATTCTGACT
1 ATCGCAATGCGATACTGACT
* * *
88298 TTCGCAACGCGATAAT-ACAT
1 ATCGCAATGCGATACTGAC-T
88318 AATCGCAATGCGAT
1 -ATCGCAATGCGAT
88332 TTTCAAAGCG
Statistics
Matches: 97, Mismatches: 13, Indels: 9
0.82 0.11 0.08
Matches are distributed among these distances:
19 4 0.04
20 67 0.69
21 24 0.25
22 2 0.02
ACGTcount: A:0.33, C:0.24, G:0.19, T:0.24
Consensus pattern (20 bp):
ATCGCAATGCGATACTGACT
Found at i:88241 original size:61 final size:61
Alignment explanation
Indices: 88176--88331 Score: 206
Period size: 61 Copynumber: 2.6 Consensus size: 61
88166 GAATAAGTAA
** *
88176 ATCGCAACGCGA-AATGGGAAAATCGCAATGCGATACTGACTATCGCAATGCGATACTGACT
1 ATCGCAACGCGATAAT-ACAAAATCGCAATGCGATACTGACTATCGCAACGCGATACTGACT
* * * * *
88237 ATCGCAATGCGATAATACAAAATCGCAACGAGATACTGACTTTCGCAACGCGATTCTGACT
1 ATCGCAACGCGATAATACAAAATCGCAATGCGATACTGACTATCGCAACGCGATACTGACT
* *
88298 TTCGCAACGCGATAATACATAATCGCAATGCGAT
1 ATCGCAACGCGATAATACAAAATCGCAATGCGAT
88332 TTTCAAAGCG
Statistics
Matches: 81, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
61 78 0.96
62 3 0.04
ACGTcount: A:0.35, C:0.24, G:0.20, T:0.22
Consensus pattern (61 bp):
ATCGCAACGCGATAATACAAAATCGCAATGCGATACTGACTATCGCAACGCGATACTGACT
Found at i:88527 original size:22 final size:22
Alignment explanation
Indices: 88499--88542 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
88489 CACTTTCTCA
88499 CCCATCTCCGACGAAATCCGTC
1 CCCATCTCCGACGAAATCCGTC
* *
88521 CCCATCTCTGGCGAAATCCGTC
1 CCCATCTCCGACGAAATCCGTC
88543 TATCTCCATC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.20, C:0.43, G:0.16, T:0.20
Consensus pattern (22 bp):
CCCATCTCCGACGAAATCCGTC
Found at i:89055 original size:25 final size:24
Alignment explanation
Indices: 89001--89055 Score: 58
Period size: 25 Copynumber: 2.2 Consensus size: 24
88991 TGTTTATTAT
* *
89001 TGTTTTTGGTATATCTTCACAGTG
1 TGTTTTTGGTATATCTTAACAGTA
89025 TAGTTTTTGGTATATC-TAACTTAGTA
1 T-GTTTTTGGTATATCTTAAC--AGTA
89051 TGTTT
1 TGTTT
89056 ATTGTTTTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
24 4 0.15
25 18 0.69
26 4 0.15
ACGTcount: A:0.20, C:0.09, G:0.18, T:0.53
Consensus pattern (24 bp):
TGTTTTTGGTATATCTTAACAGTA
Found at i:90205 original size:18 final size:18
Alignment explanation
Indices: 90184--90228 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
90174 TCCACTTCGG
*
90184 GAGCCATCACCTCGCCCA
1 GAGCCATCACCTCACCCA
*
90202 GAGCTATCACCTCACCCA
1 GAGCCATCACCTCACCCA
90220 GAGCCATCA
1 GAGCCATCA
90229 TCTGATCGAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.27, C:0.44, G:0.16, T:0.13
Consensus pattern (18 bp):
GAGCCATCACCTCACCCA
Found at i:90764 original size:19 final size:20
Alignment explanation
Indices: 90710--90776 Score: 73
Period size: 20 Copynumber: 3.4 Consensus size: 20
90700 TAGTTTACTT
* *
90710 TCGCAACACGAAAATGACTA
1 TCGCAACGCGGAAATGACTA
*
90730 TCGCAACGCGGAAATGGCTA
1 TCGCAACGCGGAAATGACTA
* **
90750 TCGCAATGC-GAAATGAAAA
1 TCGCAACGCGGAAATGACTA
90769 TCGCAACG
1 TCGCAACG
90777 ACAAAATCGT
Statistics
Matches: 39, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
19 14 0.36
20 25 0.64
ACGTcount: A:0.39, C:0.24, G:0.22, T:0.15
Consensus pattern (20 bp):
TCGCAACGCGGAAATGACTA
Found at i:90848 original size:32 final size:33
Alignment explanation
Indices: 90812--90879 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 33
90802 CGCTCGTTGT
90812 GATTTTGTCGTTGCGA-TTTCATTTCGCATTAC
1 GATTTTGTCGTTGCGATTTTCATTTCGCATTAC
*
90844 GATTTTGTCGTTGCGATTTTCATTTCGCATTGC
1 GATTTTGTCGTTGCGATTTTCATTTCGCATTAC
90877 GAT
1 GAT
90880 AGCCATTTTC
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 16 0.47
33 18 0.53
ACGTcount: A:0.15, C:0.18, G:0.21, T:0.47
Consensus pattern (33 bp):
GATTTTGTCGTTGCGATTTTCATTTCGCATTAC
Found at i:90862 original size:14 final size:14
Alignment explanation
Indices: 90805--90863 Score: 55
Period size: 14 Copynumber: 3.9 Consensus size: 14
90795 ATGAAATCGC
*
90805 TCGTTGTGATTTTG
1 TCGTTGCGATTTTG
*
90819 TCGTTGCGATTTCATT
1 TCGTTGCGATTT--TG
*
90835 TCGCATTACGATTTTG
1 TCG--TTGCGATTTTG
90851 TCGTTGCGATTTT
1 TCGTTGCGATTTT
90864 CATTTCGCAT
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
14 20 0.56
16 8 0.22
18 8 0.22
ACGTcount: A:0.12, C:0.15, G:0.22, T:0.51
Consensus pattern (14 bp):
TCGTTGCGATTTTG
Found at i:91361 original size:41 final size:42
Alignment explanation
Indices: 91265--91352 Score: 124
Period size: 41 Copynumber: 2.1 Consensus size: 42
91255 GACTCACCTG
* *
91265 TCATCCCTCAAGAGTCCCCTCCAATCGTTCAAGAGGCCCCTA
1 TCATCCCTCAAGAGTCCCCTCCAACCGTTCAAGAGGCCACTA
* * *
91307 TCCTCCCTCAAGAGTCCCC-CCCACCGTTCAAGAGGCCACTG
1 TCATCCCTCAAGAGTCCCCTCCAACCGTTCAAGAGGCCACTA
91348 TCATC
1 TCATC
91353 GTTGAAGAGG
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
41 22 0.55
42 18 0.45
ACGTcount: A:0.22, C:0.43, G:0.15, T:0.20
Consensus pattern (42 bp):
TCATCCCTCAAGAGTCCCCTCCAACCGTTCAAGAGGCCACTA
Found at i:92997 original size:20 final size:20
Alignment explanation
Indices: 92972--93047 Score: 73
Period size: 20 Copynumber: 3.8 Consensus size: 20
92962 TCGCATTGTG
*
92972 ATTTTCTAGTTGCGATAGCC
1 ATTTTCGAGTTGCGATAGCC
* ***
92992 ATTTTCGCGTTGCGATTTTTC
1 ATTTTCGAGTTGCGA-TAGCC
*
93013 A-TTTCGAATTGCGATAGCC
1 ATTTTCGAGTTGCGATAGCC
*
93032 ATTTTCGCGTTGCGAT
1 ATTTTCGAGTTGCGAT
93048 TTCCCCGTTG
Statistics
Matches: 42, Mismatches: 12, Indels: 4
0.72 0.21 0.07
Matches are distributed among these distances:
19 3 0.07
20 36 0.86
21 3 0.07
ACGTcount: A:0.17, C:0.20, G:0.21, T:0.42
Consensus pattern (20 bp):
ATTTTCGAGTTGCGATAGCC
Found at i:93286 original size:20 final size:20
Alignment explanation
Indices: 93261--93310 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
93251 TTGAAGATGA
93261 TTGCGATTTTCAGAATCTCG
1 TTGCGATTTTCAGAATCTCG
***
93281 TTGCGAAAGTCAGAATCTCG
1 TTGCGATTTTCAGAATCTCG
93301 TTGCGATTTT
1 TTGCGATTTT
93311 GTATTATCTC
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.22, C:0.18, G:0.22, T:0.38
Consensus pattern (20 bp):
TTGCGATTTTCAGAATCTCG
Found at i:94200 original size:24 final size:24
Alignment explanation
Indices: 94173--94226 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
94163 GTATTCGAAA
* *
94173 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATATTGATCAATACCCGGAC
* *
94197 TTTGATATTGATCAATACTCGGAT
1 TTTGATATTGATCAATACCCGGAC
94221 TTTGAT
1 TTTGAT
94227 GATGTTTCAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.24, C:0.17, G:0.19, T:0.41
Consensus pattern (24 bp):
TTTGATATTGATCAATACCCGGAC
Found at i:94418 original size:12 final size:12
Alignment explanation
Indices: 94401--94425 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
94391 ATATAATCCT
94401 GAAGAAGAAAAA
1 GAAGAAGAAAAA
94413 GAAGAAGAAAAA
1 GAAGAAGAAAAA
94425 G
1 G
94426 TCCCCGAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (12 bp):
GAAGAAGAAAAA
Found at i:96736 original size:19 final size:19
Alignment explanation
Indices: 96714--96844 Score: 76
Period size: 19 Copynumber: 7.7 Consensus size: 19
96704 GGAAATTACT
96714 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
96733 ATCGCAAT--G--A-GAGA
1 ATCGCAATGCGAAATGAAA
96747 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
* *
96766 ATCGCAA--CG--CT-AAT
1 ATCGCAATGCGAAATGAAA
*
96780 TTCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
* **
96799 ATTGCAA--CG--A-GGGA
1 ATCGCAATGCGAAATGAAA
96813 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
* *
96832 ATCACAACGCGAA
1 ATCGCAATGCGAA
96845 TTTAATTTCG
Statistics
Matches: 81, Mismatches: 16, Indels: 30
0.64 0.13 0.24
Matches are distributed among these distances:
14 27 0.33
15 3 0.04
16 5 0.06
17 5 0.06
18 3 0.04
19 38 0.47
ACGTcount: A:0.44, C:0.18, G:0.22, T:0.16
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:96756 original size:33 final size:33
Alignment explanation
Indices: 96714--96840 Score: 175
Period size: 33 Copynumber: 3.8 Consensus size: 33
96704 GGAAATTACT
*
96714 ATCGCAATGCGAAATGAAAATCGCAATGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
**
96747 ATCGCAATGCGAAATGAAAATCGCAACGCTA-A
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
* * *
96779 TTTCGCAATGCGAAATGAAAATTGCAACGAGGGA
1 -ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
*
96813 ATCGCAATGCGAAATGAAAATCACAACG
1 ATCGCAATGCGAAATGAAAATCGCAACG
96841 CGAATTTAAT
Statistics
Matches: 81, Mismatches: 11, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
32 1 0.01
33 79 0.98
34 1 0.01
ACGTcount: A:0.43, C:0.18, G:0.22, T:0.17
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
Found at i:96821 original size:66 final size:66
Alignment explanation
Indices: 96715--96847 Score: 221
Period size: 66 Copynumber: 2.0 Consensus size: 66
96705 GAAATTACTA
* * *
96715 TCGCAATGCGAAATGAAAATCGCAATGAGAGAATCGCAATGCGAAATGAAAATCGCAACGCTAAT
1 TCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCACAACGCGAAT
96780 T
66 T
* *
96781 TCGCAATGCGAAATGAAAATTGCAACGAGGGAATCGCAATGCGAAATGAAAATCACAACGCGAAT
1 TCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCACAACGCGAAT
96846 T
66 T
96847 T
1 T
96848 AATTTCGCGT
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
66 62 1.00
ACGTcount: A:0.42, C:0.18, G:0.22, T:0.18
Consensus pattern (66 bp):
TCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCACAACGCGAAT
T
Found at i:96891 original size:33 final size:33
Alignment explanation
Indices: 96849--96929 Score: 135
Period size: 33 Copynumber: 2.5 Consensus size: 33
96839 CGCGAATTTA
96849 ATTTCGCGTTGCGATTCTCTCGTTACGATTTTC
1 ATTTCGCGTTGCGATTCTCTCGTTACGATTTTC
* *
96882 ATTTCGCGTTGCGATTCTCTCGTTGCGGTTTTC
1 ATTTCGCGTTGCGATTCTCTCGTTACGATTTTC
*
96915 ATTTCGCATTGCGAT
1 ATTTCGCGTTGCGAT
96930 AGTACTTTTT
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 45 1.00
ACGTcount: A:0.11, C:0.23, G:0.21, T:0.44
Consensus pattern (33 bp):
ATTTCGCGTTGCGATTCTCTCGTTACGATTTTC
Found at i:96896 original size:19 final size:19
Alignment explanation
Indices: 96869--96929 Score: 51
Period size: 19 Copynumber: 3.5 Consensus size: 19
96859 GCGATTCTCT
*
96869 CGTTACGATTTTCATTTCG
1 CGTTGCGATTTTCATTTCG
*
96888 CGTTGCGA--TTC---TCT
1 CGTTGCGATTTTCATTTCG
*
96902 CGTTGCGGTTTTCATTTCG
1 CGTTGCGATTTTCATTTCG
*
96921 CATTGCGAT
1 CGTTGCGAT
96930 AGTACTTTTT
Statistics
Matches: 31, Mismatches: 6, Indels: 10
0.66 0.13 0.21
Matches are distributed among these distances:
14 9 0.29
16 3 0.10
17 3 0.10
19 16 0.52
ACGTcount: A:0.11, C:0.23, G:0.21, T:0.44
Consensus pattern (19 bp):
CGTTGCGATTTTCATTTCG
Found at i:97052 original size:14 final size:14
Alignment explanation
Indices: 97035--97071 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
97025 ACATCATTAA
97035 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
97049 ACAAATCACCTTTT
1 ACAAATCAACTTTT
97063 ACAAATCAA
1 ACAAATCAA
97072 TTAAACAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.24, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:98470 original size:21 final size:21
Alignment explanation
Indices: 98446--98561 Score: 56
Period size: 21 Copynumber: 5.5 Consensus size: 21
98436 GTGGGAGGGA
98446 CCTCTTCAACGATGACAGTGG
1 CCTCTTCAACGATGACAGTGG
* * ** *
98467 CCTCTTGAACGGTGGGAGGGG
1 CCTCTTCAACGATGACAGTGG
* * * * *
98488 ACTC-TCGAGGAATGATAGGGG
1 CCTCTTCAACG-ATGACAGTGG
*
98509 CCTCTTCAACGAT-AGGAGTGG
1 CCTCTTCAACGATGA-CAGTGG
* * **
98530 ACTCTTGAGGGATGACAGTGG
1 CCTCTTCAACGATGACAGTGG
*
98551 CCTCTTGAACG
1 CCTCTTCAACG
98562 GTGGGATGGG
Statistics
Matches: 66, Mismatches: 25, Indels: 8
0.67 0.25 0.08
Matches are distributed among these distances:
20 4 0.06
21 57 0.86
22 5 0.08
ACGTcount: A:0.22, C:0.22, G:0.34, T:0.22
Consensus pattern (21 bp):
CCTCTTCAACGATGACAGTGG
Found at i:98567 original size:84 final size:84
Alignment explanation
Indices: 98456--98631 Score: 325
Period size: 84 Copynumber: 2.1 Consensus size: 84
98446 CCTCTTCAAC
*
98456 GATGACAGTGGCCTCTTGAACGGTGGGAGGGGACTCTCGAGGAATGATAGGGGCCTCTTCAACGA
1 GATGACAGTGGCCTCTTGAACGGTGGGAGGGGACTCTCGAGGAATGATAAGGGCCTCTTCAACGA
98521 TAGGAGTGGACTCTTGAGG
66 TAGGAGTGGACTCTTGAGG
* *
98540 GATGACAGTGGCCTCTTGAACGGTGGGATGGGACTCTCGAGGAATGATAAGGGCCTCTTCAATGA
1 GATGACAGTGGCCTCTTGAACGGTGGGAGGGGACTCTCGAGGAATGATAAGGGCCTCTTCAACGA
98605 TAGGAGTGGACTCTTGAGG
66 TAGGAGTGGACTCTTGAGG
98624 GATGACAG
1 GATGACAG
98632 GTGAGTCGGG
Statistics
Matches: 89, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
84 89 1.00
ACGTcount: A:0.24, C:0.17, G:0.37, T:0.22
Consensus pattern (84 bp):
GATGACAGTGGCCTCTTGAACGGTGGGAGGGGACTCTCGAGGAATGATAAGGGCCTCTTCAACGA
TAGGAGTGGACTCTTGAGG
Found at i:98595 original size:42 final size:41
Alignment explanation
Indices: 98426--98598 Score: 163
Period size: 42 Copynumber: 4.1 Consensus size: 41
98416 GTGAATCGGG
* * * *
98426 CTCTTGAATGGTGGGAGGGACCTCTTCAACG-ATGA-CAGTGGC
1 CTCTTGAACGGTGGGAGGGA-CTC-TCGAGGAATGATAAG-GGC
*
98468 CTCTTGAACGGTGGGAGGGGACTCTCGAGGAATGATAGGGGC
1 CTCTTGAACGGTGGGA-GGGACTCTCGAGGAATGATAAGGGC
* * * * * *
98510 CTCTTCAACGATAGGAGTGGACTCTTGAGGGATGA-CAGTGGC
1 CTCTTGAACGGTGGGAG-GGACTCTCGAGGAATGATAAG-GGC
98552 CTCTTGAACGGTGGGATGGGACTCTCGAGGAATGATAAGGGC
1 CTCTTGAACGGTGGGA-GGGACTCTCGAGGAATGATAAGGGC
98594 CTCTT
1 CTCTT
98599 CAATGATAGG
Statistics
Matches: 106, Mismatches: 18, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
41 6 0.06
42 92 0.87
43 8 0.08
ACGTcount: A:0.22, C:0.19, G:0.36, T:0.23
Consensus pattern (41 bp):
CTCTTGAACGGTGGGAGGGACTCTCGAGGAATGATAAGGGC
Found at i:98616 original size:42 final size:42
Alignment explanation
Indices: 98465--98628 Score: 170
Period size: 42 Copynumber: 3.9 Consensus size: 42
98455 CGATGACAGT
* * * * *
98465 GGCCTCTTGAACGGTGGGAGGGGACTCTCGAGGAATGATAGG
1 GGCCTCTTCAACGATAGGAGTGGACTCTCGAGGAATGATAAG
* * *
98507 GGCCTCTTCAACGATAGGAGTGGACTCTTGAGGGATGA-CAG
1 GGCCTCTTCAACGATAGGAGTGGACTCTCGAGGAATGATAAG
* * *
98548 TGGCCTCTTGAACGGTGGGA-TGGGACTCTCGAGGAATGATAAG
1 -GGCCTCTTCAACGATAGGAGT-GGACTCTCGAGGAATGATAAG
* * *
98591 GGCCTCTTCAATGATAGGAGTGGACTCTTGAGGGATGA
1 GGCCTCTTCAACGATAGGAGTGGACTCTCGAGGAATGA
98629 CAGGTGAGTC
Statistics
Matches: 98, Mismatches: 20, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
41 2 0.02
42 93 0.95
43 3 0.03
ACGTcount: A:0.23, C:0.17, G:0.37, T:0.23
Consensus pattern (42 bp):
GGCCTCTTCAACGATAGGAGTGGACTCTCGAGGAATGATAAG
Found at i:98959 original size:93 final size:91
Alignment explanation
Indices: 98850--99034 Score: 284
Period size: 91 Copynumber: 2.0 Consensus size: 91
98840 ATTTCAAACT
* *
98850 TTCAACCAAAAGAC-AAAC-CAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAATTTA
1 TTCAACCAAAAGACAAAACAAAAAGACAAATACTAACTTCACAGTGTT----AATAAACAATTTA
98913 GCAGAATTGGCAGCAACCGAATAAATTTAC
62 GCAGAATTGGCAGCAACCGAATAAATTTAC
*
98943 TTCAACCAAAAGACAAAACAAAAAGACAAATACTAACTTCACAGTGTTAATAAACAGTTTAGCAG
1 TTCAACCAAAAGACAAAACAAAAAGACAAATACTAACTTCACAGTGTTAATAAACAATTTAGCAG
*
99008 TATTGGCAGCAACCGAATAAATTTAC
66 AATTGGCAGCAACCGAATAAATTTAC
99034 T
1 T
99035 AAGCAATCTA
Statistics
Matches: 86, Mismatches: 4, Indels: 6
0.90 0.04 0.06
Matches are distributed among these distances:
91 41 0.48
93 14 0.16
94 4 0.05
95 27 0.31
ACGTcount: A:0.47, C:0.19, G:0.12, T:0.22
Consensus pattern (91 bp):
TTCAACCAAAAGACAAAACAAAAAGACAAATACTAACTTCACAGTGTTAATAAACAATTTAGCAG
AATTGGCAGCAACCGAATAAATTTAC
Found at i:100727 original size:20 final size:19
Alignment explanation
Indices: 100696--100817 Score: 75
Period size: 20 Copynumber: 6.8 Consensus size: 19
100686 TCTTTTGGTT
100696 GAAATGAAAATCGCAACGA
1 GAAATGAAAATCGCAACGA
* *
100715 GATAATGAGAATCGCAACGCG
1 GA-AATGAAAATCGCAACG-A
**
100736 GAAATGACTATCGCAACGA
1 GAAATGAAAATCGCAACGA
*
100755 G--A-G--AATCGCAACGC
1 GAAATGAAAATCGCAACGA
** *
100769 GAAATGACTATCGCGACGA
1 GAAATGAAAATCGCAACGA
*
100788 G--A-G--AATCGCAACGC
1 GAAATGAAAATCGCAACGA
100802 GAAATGAAAATCGCAA
1 GAAATGAAAATCGCAA
100818 TGCGATTTTG
Statistics
Matches: 78, Mismatches: 13, Indels: 24
0.68 0.11 0.21
Matches are distributed among these distances:
14 19 0.24
16 4 0.05
17 4 0.05
19 20 0.26
20 29 0.37
21 2 0.03
ACGTcount: A:0.43, C:0.20, G:0.25, T:0.12
Consensus pattern (19 bp):
GAAATGAAAATCGCAACGA
Found at i:100778 original size:33 final size:33
Alignment explanation
Indices: 100721--100817 Score: 158
Period size: 33 Copynumber: 2.9 Consensus size: 33
100711 ACGAGATAAT
100721 GAGAATCGCAACGCGGAAATGACTATCGCAACGA
1 GAGAATCGCAACGC-GAAATGACTATCGCAACGA
*
100755 GAGAATCGCAACGCGAAATGACTATCGCGACGA
1 GAGAATCGCAACGCGAAATGACTATCGCAACGA
**
100788 GAGAATCGCAACGCGAAATGAAAATCGCAA
1 GAGAATCGCAACGCGAAATGACTATCGCAA
100818 TGCGATTTTG
Statistics
Matches: 59, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
33 45 0.76
34 14 0.24
ACGTcount: A:0.40, C:0.23, G:0.26, T:0.11
Consensus pattern (33 bp):
GAGAATCGCAACGCGAAATGACTATCGCAACGA
Found at i:100851 original size:19 final size:19
Alignment explanation
Indices: 100818--100884 Score: 80
Period size: 19 Copynumber: 3.5 Consensus size: 19
100808 AAAATCGCAA
**
100818 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTTATTTCGCGT
100837 TGCGATTTTTATTTCGCGT
1 TGCGATTTTTATTTCGCGT
** *
100856 TGCGATAGTTATTTCCGCAT
1 TGCGATTTTTATTT-CGCGT
100876 TGCGATTTT
1 TGCGATTTT
100885 CATTCTCGAA
Statistics
Matches: 40, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
19 29 0.73
20 11 0.28
ACGTcount: A:0.12, C:0.16, G:0.24, T:0.48
Consensus pattern (19 bp):
TGCGATTTTTATTTCGCGT
Found at i:101424 original size:20 final size:20
Alignment explanation
Indices: 101399--101451 Score: 88
Period size: 20 Copynumber: 2.6 Consensus size: 20
101389 GCGCTATGTA
101399 AATCGCGTTGCGAAAGTCAG
1 AATCGCGTTGCGAAAGTCAG
101419 AATCGCGTTGCGAAAGTCAG
1 AATCGCGTTGCGAAAGTCAG
* *
101439 TATCTCGTTGCGA
1 AATCGCGTTGCGA
101452 TTTTGTATTA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (20 bp):
AATCGCGTTGCGAAAGTCAG
Found at i:101485 original size:20 final size:20
Alignment explanation
Indices: 101460--101513 Score: 99
Period size: 20 Copynumber: 2.7 Consensus size: 20
101450 GATTTTGTAT
101460 TATCGCATTGCGATAGTAAG
1 TATCGCATTGCGATAGTAAG
*
101480 TATCGCATTGCGATAGTCAG
1 TATCGCATTGCGATAGTAAG
101500 TATCGCATTGCGAT
1 TATCGCATTGCGAT
101514 TTTCCCAATT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (20 bp):
TATCGCATTGCGATAGTAAG
Found at i:101498 original size:61 final size:61
Alignment explanation
Indices: 101400--101516 Score: 162
Period size: 61 Copynumber: 1.9 Consensus size: 61
101390 CGCTATGTAA
* * * * *
101400 ATCGCGTTGCGAAAGTCAGAATCGCGTTGCGAAAGTCAGTATCTCGTTGCGATTTTGTATT
1 ATCGCATTGCGAAAGTAAGAATCGCATTGCGAAAGTCAGTATCGCATTGCGATTTTGTATT
* * *
101461 ATCGCATTGCGATAGTAAGTATCGCATTGCGATAGTCAGTATCGCATTGCGATTTT
1 ATCGCATTGCGAAAGTAAGAATCGCATTGCGAAAGTCAGTATCGCATTGCGATTTT
101517 CCCAATTCGC
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
61 48 1.00
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.33
Consensus pattern (61 bp):
ATCGCATTGCGAAAGTAAGAATCGCATTGCGAAAGTCAGTATCGCATTGCGATTTTGTATT
Found at i:101532 original size:61 final size:61
Alignment explanation
Indices: 101400--101534 Score: 155
Period size: 61 Copynumber: 2.2 Consensus size: 61
101390 CGCTATGTAA
* * * * * ** *
101400 ATCGCGTTGCGAAAGTCAGAATCGCGTTGCGAAAGTCAGTATCTCGTTGCGATTTTGTATT
1 ATCGCGTTGCGATAGTAAGAATCGCATTGCGAAAGTCAGTATCGCATTGCGATTTTCCAAT
* * *
101461 ATCGCATTGCGATAGTAAGTATCGCATTGCGATAGTCAGTATCGCATTGCGATTTTCCCAAT
1 ATCGCGTTGCGATAGTAAGAATCGCATTGCGAAAGTCAGTATCGCATTGCGATTTT-CCAAT
101523 -TCGCGTTGCGAT
1 ATCGCGTTGCGAT
101535 TTACTTATTC
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
61 59 0.97
62 2 0.03
ACGTcount: A:0.23, C:0.20, G:0.24, T:0.33
Consensus pattern (61 bp):
ATCGCGTTGCGATAGTAAGAATCGCATTGCGAAAGTCAGTATCGCATTGCGATTTTCCAAT
Found at i:102890 original size:101 final size:102
Alignment explanation
Indices: 102759--102965 Score: 398
Period size: 101 Copynumber: 2.0 Consensus size: 102
102749 TCAATAACTA
102759 TATCTTCGATAATAATAGATGTATGCCCTGCTTAAAGTGATCATATGTTTATCTTAAAATTCAGA
1 TATCTTCGATAATAATAGATGTATGCCCTGCTTAAAGTGATCATATGTTTATCTTAAAATTCAGA
102824 TTTTTTTCAATTAATTATTAATTTTA-TATTTATGTT
66 TTTTTTTCAATTAATTATTAATTTTATTATTTATGTT
*
102860 TATCTTCGATAATAATAGATGTATGTCCTGCTTAAAGTGATCATATGTTTATCTTAAAATTCAGA
1 TATCTTCGATAATAATAGATGTATGCCCTGCTTAAAGTGATCATATGTTTATCTTAAAATTCAGA
102925 TTTTTTTCAATTAATTATTAATTTTATTATTTATGTT
66 TTTTTTTCAATTAATTATTAATTTTATTATTTATGTT
102962 TATC
1 TATC
102966 CTAAAATTTT
Statistics
Matches: 104, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
101 90 0.87
102 14 0.13
ACGTcount: A:0.31, C:0.10, G:0.10, T:0.49
Consensus pattern (102 bp):
TATCTTCGATAATAATAGATGTATGCCCTGCTTAAAGTGATCATATGTTTATCTTAAAATTCAGA
TTTTTTTCAATTAATTATTAATTTTATTATTTATGTT
Found at i:110586 original size:13 final size:11
Alignment explanation
Indices: 110552--110582 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
110542 ATTTATTACT
110552 AAAAATATTAA
1 AAAAATATTAA
110563 AAAAATATTAA
1 AAAAATATTAA
110574 AAAAATATT
1 AAAAATATT
110583 TTAATAATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (11 bp):
AAAAATATTAA
Found at i:112880 original size:33 final size:33
Alignment explanation
Indices: 112838--112903 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
112828 ATTTAACCAG
112838 CAGCTGTTAGTAGCGTTTCTTGTGATGGGTCTA
1 CAGCTGTTAGTAGCGTTTCTTGTGATGGGTCTA
112871 CAGCTGTTAGTAGCGTTTCTTGTGATGGGTCTA
1 CAGCTGTTAGTAGCGTTTCTTGTGATGGGTCTA
112904 TCTCAATACC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.15, C:0.15, G:0.30, T:0.39
Consensus pattern (33 bp):
CAGCTGTTAGTAGCGTTTCTTGTGATGGGTCTA
Done.