Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005951.1 Hibiscus syriacus cultivar Beakdansim tig00013972_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35192

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
99--140
17
2.5
17
100
0
84
42
9
4
42
1.58
1150--1203
21
2.6
19
75
16
54
25
31
18
24
1.97
2623--2662
14
2.9
14
80
0
53
30
0
17
52
1.45
2999--3082
39
2.2
39
97
0
159
16
15
20
47
1.82
3379--3417
6
6.5
6
84
0
51
53
12
2
30
1.52
3383--3425
12
3.6
12
77
0
50
46
18
2
32
1.62
3375--3425
24
2.1
24
92
0
84
47
15
3
33
1.64
3800--3847
25
2.0
24
87
4
69
47
18
8
25
1.76
3938--3978
19
2.1
20
95
4
75
31
26
21
19
1.97
6557--6608
24
2.2
24
82
0
59
36
21
19
23
1.95
6720--6753
12
2.8
12
90
0
50
14
0
29
55
1.40
7498--7561
19
3.4
19
89
4
85
31
12
21
34
1.91
7518--7572
19
2.9
19
89
5
67
32
12
16
38
1.86
8397--8440
20
2.2
20
100
0
88
4
18
45
31
1.69
11646--11713
21
3.2
21
78
12
66
32
7
4
55
1.47
11758--11813
26
2.2
25
79
17
62
50
0
1
48
1.11
12524--12570
20
2.5
19
80
16
53
23
19
21
36
1.95
12787--12838
19
2.8
18
80
8
68
26
0
25
48
1.52
15410--15464
13
4.1
13
79
9
56
61
12
0
25
1.31
15410--15458
13
3.6
13
83
8
62
61
12
0
26
1.31
15983--16026
21
2.1
21
86
0
61
27
18
27
27
1.98
18442--18603
42
3.9
42
96
0
297
16
19
17
46
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18785--18845
21
2.9
21
78
11
54
47
0
0
52
1.00
18784--18856
30
2.4
30
82
17
98
50
0
0
49
1.00
18784--18875
30
3.1
30
78
20
95
50
1
0
48
1.08
18792--18856
31
2.1
31
86
13
91
50
0
0
49
1.00
19131--19200
20
3.5
20
94
0
122
35
12
10
41
1.77
19131--19209
40
2.0
40
87
0
113
35
13
8
41
1.76
19183--19249
15
4.5
15
84
3
91
34
19
7
38
1.80
19183--19254
30
2.4
30
97
2
137
31
19
6
41
1.78
20571--20596
2
13.0
2
100
0
52
50
0
0
50
1.00
21268--21297
2
15.0
2
100
0
60
50
0
0
50
1.00
25173--25207
2
17.5
2
100
0
70
48
0
0
51
1.00
27336--27540
92
2.2
92
96
1
378
56
1
6
35
1.36

Tables:   1

The End!