genome.fa.s5953.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005953.1 Hibiscus syriacus cultivar Beakdansim tig00013984_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  126650

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4387--4418	3	10.7	3	100	0	64	65	0	0	34	0.93
6261--6307	25	1.9	24	83	12	60	72	6	6	14	1.25
6262--6315	28	2.0	27	82	10	65	70	7	7	14	1.32
6269--6325	25	2.1	29	84	12	77	70	5	7	17	1.29
10342--10431	24	3.8	24	72	15	78	28	24	22	24	1.99
10666--10736	31	2.3	31	92	2	117	32	23	4	39	1.74
12150--12385	37	6.3	38	73	12	186	43	8	4	43	1.55
13720--13783	31	2.0	31	85	8	85	48	29	9	12	1.72
13939--14030	36	2.5	36	82	8	96	41	31	8	18	1.81
14013--14094	33	2.6	33	84	9	100	45	25	9	19	1.81
21742--21784	18	2.4	18	96	0	77	23	25	11	39	1.88
25450--25746	41	7.2	40	69	15	142	32	20	15	31	1.94
25594--25788	41	4.7	42	73	13	152	33	18	14	33	1.91
25604--25787	84	2.2	83	84	2	235	32	19	14	33	1.92
30216--30414	42	4.8	41	79	7	177	26	22	16	34	1.95
37898--37928	2	15.5	2	100	0	62	51	0	0	48	1.00
58856--58923	34	2.0	34	97	0	127	16	32	19	32	1.93
62887--62971	27	3.1	27	91	0	134	38	5	8	47	1.58
63142--63192	20	2.5	20	100	0	102	25	19	5	49	1.71
63308--63369	2	31.0	2	100	0	124	50	0	0	50	1.00
64741--64888	77	1.9	77	97	0	278	37	12	8	42	1.72
70669--70731	21	3.0	21	76	15	67	52	4	0	42	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72236--72273	2	19.5	2	94	5	69	47	0	0	52	1.00
74835--74885	23	2.2	23	78	0	57	41	3	13	41	1.63
79363--79411	24	1.9	26	84	12	66	46	0	2	51	1.12
88743--88790	25	2.0	25	83	4	62	22	4	14	58	1.54
89643--89675	17	1.9	17	100	0	66	30	18	9	42	1.81
89836--89885	20	2.2	23	76	23	61	36	2	0	62	1.07
89842--89880	20	1.9	21	94	5	71	41	0	0	58	0.98
95141--95274	71	1.9	71	90	0	214	29	20	23	26	1.99
104331--104541	81	2.6	82	92	3	352	29	26	24	19	1.98
108470--108507	21	1.9	20	89	10	60	23	23	0	52	1.47
110258--110294	17	2.2	18	90	9	60	45	0	0	54	1.00
110265--110306	19	2.4	19	84	11	54	57	2	0	40	1.12
113279--113741	214	2.2	215	84	3	610	51	15	11	21	1.74
114347--114498	29	5.2	29	77	3	144	38	16	22	23	1.93
114347--114498	58	2.6	58	82	6	173	38	16	22	23	1.93
121251--121744	41	11.8	41	74	10	338	29	19	18	33	1.95
121237--121748	82	6.1	82	77	9	442	29	18	18	33	1.95
121383--121652	93	3.0	93	77	14	289	28	19	19	32	1.96
121341--121611	134	2.0	135	85	5	361	29	17	19	33	1.95
121479--121748	41	6.6	41	87	2	344	27	19	19	33	1.96
121474--121756	125	2.3	122	84	3	372	29	19	18	33	1.95
121479--121753	84	3.3	82	85	3	347	28	18	18	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
125865--125939	29	2.6	29	82	4	89	37	17	22	22	1.94

Tables:   1

The End!