Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005954.1 Hibiscus syriacus cultivar Beakdansim tig00013986_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85164

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1296--1437
69
2.0
70
98
1
277
26
21
19
33
1.97
7994--8058
31
2.1
31
94
0
112
29
12
15
43
1.83
16107--16137
16
1.9
16
100
0
62
35
19
6
38
1.77
28697--29316
308
2.0
306
99
0
1222
31
15
26
26
1.96
32566--32606
2
20.5
2
100
0
82
51
0
0
48
1.00
32831--32905
30
2.5
30
78
10
82
42
1
6
49
1.37
34371--34419
24
2.0
24
84
7
64
71
0
22
6
1.08
35787--35826
17
2.2
18
86
8
55
40
7
0
52
1.30
38322--38404
29
2.8
29
88
1
121
42
9
14
33
1.78
41765--41794
15
2.0
15
93
0
51
13
0
30
56
1.37
43071--43150
29
2.7
30
80
7
92
42
8
15
33
1.77
44733--44780
3
16.0
3
100
0
96
66
0
0
33
0.92
55666--55698
14
2.4
14
90
10
50
48
18
0
33
1.48
56722--57456
200
3.6
199
80
8
754
29
15
14
40
1.87
59908--60263
177
2.0
177
91
1
570
30
16
14
37
1.89
63280--63332
25
2.2
25
86
10
74
20
22
26
30
1.98
65996--66041
3
15.3
3
81
0
56
23
32
2
41
1.67
65996--66041
12
3.8
12
91
0
65
23
32
2
41
1.67
67842--67894
21
2.5
21
93
0
97
35
13
5
45
1.67
67642--68478
200
4.0
221
85
6
798
31
15
14
37
1.88
67512--68490
421
2.4
405
88
5
1447
31
15
14
37
1.88
67863--68490
200
3.1
200
92
0
1035
30
16
15
37
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
69338--70017
4
170.2
4
98
0
1328
49
25
0
24
1.51
70983--71032
16
3.0
16
76
5
55
8
26
0
66
1.19
73753--73810
20
2.9
19
73
9
53
18
13
10
56
1.65
73593--74011
182
2.3
181
89
3
619
28
15
13
42
1.84
76407--76440
9
3.7
9
92
4
50
0
23
2
73
0.97
83784--83833
25
2.0
25
100
0
100
28
20
12
40
1.87

Tables:   1

The End!