Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005955.1 Hibiscus syriacus cultivar Beakdansim tig00013989_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  130909

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5179--5204
10
2.6
10
100
0
52
0
26
0
73
0.84
21216--21264
23
2.2
22
85
7
64
14
14
18
53
1.74
31421--31466
19
2.4
19
96
0
83
65
0
23
10
1.24
35493--35532
19
2.0
20
90
4
64
20
15
0
65
1.28
35749--35829
30
2.7
30
75
11
85
74
4
19
1
1.08
35767--35824
21
2.8
22
78
17
61
72
5
22
0
1.04
39384--39434
21
2.4
21
83
0
66
31
37
5
25
1.80
39395--39442
21
2.3
21
96
0
87
29
37
10
22
1.88
39610--39683
34
2.2
34
90
0
112
41
8
13
36
1.74
60709--60767
24
2.5
23
83
5
66
61
15
15
8
1.56
60720--60765
24
2.0
23
95
4
83
58
19
13
8
1.60
61928--62004
23
3.4
23
62
7
59
41
19
16
22
1.90
61930--62031
44
2.3
44
100
0
204
37
18
15
28
1.92
62521--62556
18
1.9
20
88
11
58
63
0
16
19
1.30
62515--62564
20
2.4
21
81
18
61
66
0
12
22
1.24
67686--67753
18
3.8
17
73
21
50
4
14
2
77
1.04
67696--67745
18
2.8
18
82
14
59
2
18
4
76
1.04
67697--67758
20
3.2
19
77
11
63
3
16
3
77
1.03
69887--69931
22
2.0
22
100
0
90
17
22
22
37
1.94
73328--73440
36
3.2
36
91
1
165
32
35
3
28
1.74
73328--73427
13
8.4
11
72
23
69
31
36
3
30
1.73
73816--73862
17
2.6
19
78
18
55
76
12
10
0
1.02
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
77742--77854
36
3.2
36
89
1
165
33
36
2
27
1.71
77742--77840
13
8.3
11
73
23
76
32
36
2
29
1.69
77825--77893
33
2.1
33
83
5
86
30
36
1
31
1.67
84027--84080
18
2.9
19
82
17
69
0
18
3
77
0.91
91510--91534
2
12.5
2
100
0
50
48
0
0
52
1.00
95048--95076
2
14.5
2
100
0
58
48
0
0
51
1.00
97821--97863
10
4.3
10
91
8
70
88
0
11
0
0.52
97821--97863
19
2.2
20
91
8
70
88
0
11
0
0.52
108454--108486
16
2.2
16
89
10
52
0
9
9
81
0.87
108467--108507
11
3.6
11
86
3
55
7
12
4
75
1.16
114706--114738
17
1.9
17
93
0
57
30
27
0
42
1.56

Tables:   1

The End!