Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005957.1 Hibiscus syriacus cultivar Beakdansim tig00013997_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60325

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
341--426
12
6.9
12
74
15
59
58
1
2
38
1.19
350--424
18
4.2
18
74
17
75
58
1
1
38
1.15
398--438
22
1.9
22
90
5
66
60
2
2
34
1.23
3040--3109
20
3.5
20
84
5
72
32
17
11
38
1.85
10790--10842
23
2.3
22
75
9
52
58
1
1
37
1.20
13406--13444
19
2.1
19
85
4
53
38
0
0
61
0.96
15713--15754
19
2.3
19
88
8
61
69
0
0
30
0.89
16506--16549
21
2.1
21
83
8
54
38
18
13
29
1.89
18857--18921
31
2.1
31
82
5
78
21
13
32
32
1.93
18973--19011
20
2.0
20
94
0
69
23
12
17
46
1.83
27250--27364
23
5.0
23
79
0
131
28
23
26
20
1.99
27250--27364
46
2.5
46
95
0
203
28
23
26
20
1.99
31927--32082
31
5.1
31
90
1
201
32
25
21
21
1.98
31981--32107
31
4.1
31
87
2
103
33
22
20
22
1.97
32603--32627
2
12.5
2
100
0
50
48
0
0
52
1.00
32808--32859
19
2.7
19
96
0
95
44
17
3
34
1.67
32802--32865
19
3.4
19
86
2
76
46
18
3
31
1.65
33203--33247
21
2.1
21
91
0
72
15
22
28
33
1.95
36483--36613
31
4.3
31
92
1
196
32
24
22
21
1.98
36486--36605
61
2.0
60
90
4
188
33
23
22
20
1.97
36537--36663
31
4.1
31
86
2
94
34
22
21
21
1.97
36486--36638
62
2.5
61
84
3
175
33
24
22
19
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37364--37408
19
2.4
19
77
3
56
48
20
2
28
1.61
37747--37791
21
2.1
21
87
0
63
15
24
28
31
1.96
39855--39907
23
2.3
23
83
6
72
26
28
28
16
1.97
41428--41475
22
2.1
21
81
11
51
10
20
31
37
1.87
41506--41548
21
2.0
21
81
0
50
13
25
30
30
1.94
42685--42741
15
3.8
15
71
15
55
75
0
5
19
0.99
42654--42746
37
2.6
37
86
6
120
70
0
4
24
1.04
42790--42832
18
2.4
18
88
7
61
72
0
6
20
1.08
50231--50282
27
1.9
27
92
0
86
30
11
42
15
1.82
51266--51300
16
2.2
16
100
0
70
25
11
5
57
1.56
54484--54523
20
1.9
20
85
10
53
52
0
10
37
1.35

Tables:   1

The End!