Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005958.1 Hibiscus syriacus cultivar Beakdansim tig00013998_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104693

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3861--3920
30
2.0
31
83
3
77
56
5
8
30
1.50
4510--4538
14
2.0
15
93
6
51
44
0
6
48
1.29
4754--4785
13
2.3
15
89
10
50
62
6
3
28
1.34
12738--12804
18
3.6
18
70
18
64
43
13
10
32
1.78
18603--18733
31
4.2
31
79
8
133
28
19
19
32
1.97
18717--18788
30
2.4
30
92
0
117
26
20
22
30
1.98
21993--22149
64
2.5
64
76
12
153
35
20
17
26
1.95
23266--23392
31
4.1
31
75
10
89
28
18
19
33
1.96
23318--23393
31
2.5
31
88
0
107
30
18
21
30
1.97
23380--23451
30
2.4
30
90
0
108
25
20
23
30
1.99
24219--24243
2
12.5
2
100
0
50
52
0
0
48
1.00
27871--27930
17
3.4
17
91
8
102
60
28
6
5
1.43
27875--27930
19
3.1
19
89
10
98
58
30
5
5
1.42
37437--37486
2
25.0
2
100
0
100
50
0
0
50
1.00
38194--38225
2
16.0
2
100
0
64
50
0
0
50
1.00
58459--58496
20
1.9
20
89
10
60
15
0
23
60
1.35
66235--66281
16
2.8
18
78
18
57
17
10
40
31
1.83
67097--67153
24
2.4
24
100
0
114
33
24
21
21
1.97
69630--69677
18
2.7
18
90
0
78
18
22
41
16
1.90
71764--71815
24
2.2
24
82
0
59
48
21
11
19
1.80
71780--71886
12
8.8
13
65
15
68
36
24
17
21
1.95
71780--71891
24
4.7
24
93
0
179
35
23
18
22
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
74348--74386
18
2.2
18
100
0
78
10
20
51
17
1.74
87780--87978
95
2.1
95
99
0
389
49
4
19
27
1.66
88590--88644
20
2.8
20
88
0
74
25
21
27
25
2.00
103216--103266
18
2.7
19
78
9
59
23
3
1
70
1.14

Tables:   1

The End!