Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005959.1 Hibiscus syriacus cultivar Beakdansim tig00014003_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62975

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4467--4515
14
3.3
15
74
25
50
57
2
0
40
1.10
4797--5073
62
4.5
60
78
13
196
20
19
23
36
1.95
4816--4948
41
3.2
41
92
2
230
19
19
24
36
1.95
4797--5089
104
2.8
103
87
8
389
20
19
22
36
1.95
4816--4969
83
1.9
82
90
5
247
20
19
22
37
1.94
4940--5087
42
3.5
42
88
0
235
20
19
21
37
1.94
5183--5217
6
6.0
6
96
3
63
34
51
14
0
1.42
5805--5937
21
6.4
21
79
10
166
38
19
19
22
1.94
5826--5977
63
2.4
61
88
6
232
35
23
19
21
1.96
5798--5977
42
4.3
40
82
9
211
35
21
20
22
1.96
5929--5983
21
2.6
21
94
0
92
30
29
21
18
1.97
7025--7088
23
2.8
24
76
9
71
42
1
0
56
1.09
7824--7865
16
2.5
17
80
7
50
42
0
0
57
0.99
7816--7865
20
2.5
20
80
6
57
44
0
0
56
0.99
11787--11920
64
2.1
64
90
0
214
43
10
26
20
1.83
12734--12779
4
11.8
4
90
4
67
26
4
0
69
1.07
12736--12775
19
2.1
19
90
0
62
25
5
0
70
1.08
12734--12780
23
2.0
23
91
0
76
27
4
0
68
1.08
20927--20981
21
2.6
22
82
5
69
27
14
25
32
1.95
21002--21078
21
3.7
21
89
1
102
22
18
25
33
1.96
21525--21592
25
2.6
25
76
6
64
51
10
8
29
1.66
23011--23054
21
2.0
21
82
8
52
34
15
25
25
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23237--23297
21
2.9
21
73
7
61
19
14
32
32
1.92
27147--27250
33
3.2
33
93
1
174
30
7
16
45
1.75
28288--28341
16
3.5
16
76
16
60
62
1
0
35
1.06
28286--28346
28
2.2
27
80
13
70
57
1
0
40
1.08
28566--28600
16
2.2
16
89
0
52
48
28
17
5
1.69
29340--29418
32
2.5
31
74
13
79
44
24
7
24
1.79
29433--29497
32
2.0
32
88
5
96
38
16
13
30
1.88
30473--30551
29
2.7
29
90
0
113
16
39
29
15
1.89
30655--30746
46
2.0
46
93
4
159
15
33
23
27
1.95
30792--30858
29
2.3
29
84
0
80
7
31
32
28
1.85
33610--33642
16
2.0
17
88
5
50
9
15
6
69
1.34
40541--40586
2
23.0
2
100
0
92
50
0
0
50
1.00
44494--44518
13
1.9
13
100
0
50
44
0
0
56
0.99
44492--44639
21
7.0
21
65
15
63
49
2
0
47
1.15
58502--58532
16
2.0
15
93
6
53
22
0
0
77
0.77
60053--60105
20
2.6
21
76
8
65
28
32
15
24
1.95
60137--60181
20
2.2
20
88
0
72
40
24
15
20
1.91
60706--60782
20
3.8
20
80
1
82
14
16
14
54
1.71
62793--62870
38
2.0
42
80
14
94
21
39
19
19
1.92

Tables:   1

The End!