genome.fa.s5961.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005961.1 Hibiscus syriacus cultivar Beakdansim tig00014006_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95812

Tables:   1   

This is table  1  of  1  ( 80 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3711--3830	2	62.5	2	66	22	53	50	3	1	45	1.28
3711--3793	17	4.7	19	70	28	60	51	3	0	44	1.18
3711--3800	34	2.8	32	81	10	94	52	3	0	44	1.17
3719--3852	45	2.8	50	76	18	140	48	4	2	44	1.35
3742--3869	22	6.1	21	72	20	67	46	4	3	45	1.39
3999--4037	18	2.2	18	85	0	51	35	5	7	51	1.53
4038--4139	14	7.4	14	70	14	61	25	0	25	48	1.58
4035--4144	27	4.1	26	75	10	87	25	0	25	48	1.57
4054--4146	14	6.8	14	70	12	68	25	1	25	47	1.59
4926--5005	37	2.2	36	80	10	90	32	20	17	30	1.95
8031--8171	64	2.2	63	80	10	155	33	23	19	24	1.97
14343--14748	200	2.0	200	99	0	803	35	12	18	33	1.89
15857--15901	23	2.0	23	81	0	54	22	26	24	26	2.00
23970--24008	2	19.5	2	84	10	53	43	2	2	51	1.29
24080--24118	19	2.1	19	90	9	62	38	0	33	28	1.57
24085--24128	19	2.2	20	84	4	54	47	0	25	27	1.52
24328--24365	18	2.1	18	90	0	58	42	0	10	47	1.38
24470--24524	22	2.5	21	85	11	74	40	5	0	54	1.23
24583--24631	23	2.1	24	92	7	84	46	4	0	48	1.20
24890--24953	16	4.0	16	91	0	92	40	14	26	18	1.89
26046--26079	17	2.1	15	89	10	50	44	0	5	50	1.26
26260--26340	30	2.5	31	80	7	92	49	2	4	43	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28254--28307	25	2.2	25	87	9	76	51	11	7	29	1.64
28681--28738	3	18.0	3	92	3	71	37	1	0	60	1.07
30040--30064	9	2.8	9	100	0	50	32	8	0	60	1.26
30246--30287	20	2.2	19	86	4	57	33	0	2	64	1.07
30144--30360	120	1.8	119	81	4	267	36	8	8	46	1.64
30860--30904	18	2.5	18	79	13	56	24	2	0	73	0.95
35513--35572	2	30.0	2	100	0	120	50	0	0	50	1.00
35881--35943	1	63.0	1	80	0	54	87	4	7	0	0.67
35894--35930	15	2.5	15	100	0	74	83	5	10	0	0.79
35882--35941	26	2.3	26	85	5	86	86	5	8	0	0.69
35880--35949	22	3.2	22	78	9	81	84	4	11	0	0.76
35875--35943	15	4.5	15	82	10	61	85	4	10	0	0.72
35881--35949	11	6.3	11	81	5	68	85	4	10	0	0.72
35867--35942	10	7.3	10	77	16	66	84	3	11	0	0.76
40796--40850	22	2.5	22	93	0	101	34	10	14	40	1.81
41528--41709	76	2.4	76	87	3	260	25	19	20	35	1.96
41727--42263	113	4.8	112	89	3	722	39	14	17	28	1.89
41740--42263	225	2.3	227	87	2	743	39	14	17	28	1.89
41727--42384	113	5.8	114	84	6	689	39	14	17	28	1.89
42191--42529	121	2.8	121	85	4	400	41	15	17	25	1.89
42430--42488	17	3.4	17	68	25	50	47	11	25	15	1.79
42742--42806	3	21.0	3	90	9	96	36	0	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44286--44327	20	2.2	19	86	4	57	33	0	2	64	1.07
44184--44400	120	1.8	119	83	4	285	36	8	8	46	1.66
53771--53831	22	2.8	21	70	9	50	37	14	24	22	1.92
53951--53983	3	11.0	3	100	0	66	33	0	0	66	0.92
56772--57317	252	2.2	252	94	0	966	37	17	16	29	1.91
58380--58410	2	15.0	2	93	6	53	48	0	3	48	1.17
60223--60255	3	10.7	3	93	6	57	36	0	0	63	0.95
60652--60702	21	2.4	21	86	0	75	27	21	27	23	1.99
60726--60779	22	2.5	22	71	0	54	25	14	12	46	1.81
62285--62358	31	2.4	31	88	0	112	48	14	9	27	1.75
76636--76687	19	2.8	19	85	5	72	30	23	25	21	1.99
77451--77529	9	9.1	9	73	17	53	58	0	0	41	0.98
77442--77535	27	3.4	25	84	15	107	61	0	0	38	0.96
77433--77552	32	3.9	31	79	12	149	63	0	0	35	1.01
78561--79156	298	2.0	299	92	2	1004	44	5	8	41	1.57
87055--87107	21	2.5	21	81	6	72	20	26	18	33	1.96
87082--87190	41	2.7	41	74	5	105	32	21	18	28	1.96
87158--87230	21	3.5	21	77	3	76	21	20	19	38	1.94
87220--87331	20	5.6	20	84	6	129	36	20	19	23	1.95
87220--87313	41	2.3	41	85	5	129	38	19	20	22	1.94
87926--87991	33	2.0	34	90	3	107	10	25	22	40	1.86
87904--88016	19	6.1	19	78	13	119	12	23	19	44	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
89268--89314	18	2.6	18	100	0	94	29	46	12	10	1.76
89716--89895	95	2.0	87	88	8	261	20	12	18	47	1.81
90120--90199	42	1.9	42	81	0	97	22	38	16	22	1.92
91588--91623	14	2.6	14	95	0	63	30	0	25	44	1.54
91726--91815	33	2.7	33	87	0	117	41	20	23	15	1.90
91811--91885	19	4.2	19	73	16	88	10	24	20	45	1.82
91811--91928	52	2.2	52	89	1	173	12	22	21	44	1.85
91811--91895	19	4.7	19	74	14	81	11	21	20	47	1.81
95194--95245	21	2.5	20	81	3	59	40	17	21	21	1.91
95234--95291	20	2.9	20	89	0	71	29	24	20	25	1.99
95230--95300	20	3.5	20	82	0	70	35	22	19	22	1.96
95565--95618	14	3.5	14	75	22	54	11	16	20	51	1.74
95547--95617	33	2.2	33	81	0	79	19	16	21	42	1.89
95560--95607	19	2.8	18	79	20	59	12	16	18	52	1.75

Tables:   1

The End!