genome.fa.s5962.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005962.1 Hibiscus syriacus cultivar Beakdansim tig00014008_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61046

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
662--1167	30	17.1	30	75	8	392	23	39	7	28	1.82
664--1167	58	8.5	61	76	9	346	23	39	7	28	1.82
596--1167	89	6.4	89	77	6	453	23	40	7	28	1.81
662--1167	119	4.3	116	75	10	393	23	39	7	28	1.82
688--1167	177	2.7	176	80	7	483	24	39	7	28	1.82
7689--7731	22	2.0	21	81	4	50	34	13	41	9	1.77
18390--18526	59	2.3	60	77	7	136	31	17	15	35	1.91
20292--20526	126	1.9	126	81	5	287	29	28	15	26	1.96
27318--27347	15	1.9	16	93	6	53	43	0	3	53	1.17
33067--33116	9	5.6	9	87	0	73	10	36	22	32	1.87
33416--33478	27	2.3	27	91	0	99	28	14	39	17	1.89
33433--33486	27	2.0	27	85	0	72	29	12	35	22	1.91
35027--35248	111	2.0	111	95	0	399	44	12	8	34	1.72
35535--35642	50	2.2	50	88	3	164	22	29	31	16	1.96
35535--35660	50	2.5	50	83	10	159	22	28	31	17	1.96
41045--41525	269	1.8	261	86	7	698	39	19	12	28	1.89
41481--41551	32	2.2	32	85	7	92	39	35	14	11	1.81
42287--42316	13	2.3	13	94	0	51	26	16	16	40	1.90
42820--42892	30	2.5	28	84	13	85	26	24	13	35	1.93
45179--45274	21	4.6	21	72	0	75	23	13	21	40	1.89
45280--45339	23	2.8	21	84	5	66	16	20	30	33	1.94
49398--49568	30	5.8	29	88	2	144	18	25	20	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49482--49563	30	2.7	30	98	0	155	20	26	19	32	1.97
51921--51963	13	3.2	13	83	3	50	0	18	6	74	1.04
55095--55138	20	2.2	19	84	15	54	25	4	6	63	1.38

Tables:   1

The End!