Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01005964.1 Hibiscus syriacus cultivar Beakdansim tig00014013_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 157834
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
Found at i:2594 original size:2 final size:2
Alignment explanation
Indices: 2587--2611 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
2577 TGGAAGTTTT
2587 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
2612 TGGCCAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7161 original size:2 final size:2
Alignment explanation
Indices: 7154--7194 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
7144 ACTTTATTTT
7154 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7195 TATTAACAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:40688 original size:20 final size:22
Alignment explanation
Indices: 40643--40700 Score: 84
Period size: 20 Copynumber: 2.6 Consensus size: 22
40633 GCATGGGTAG
40643 TGCATCGATGCACATGTTAAAGAA
1 TGCATCGATGCAC-TGTT-AAGAA
40667 TGCATCGATGCACTG-T-AGAA
1 TGCATCGATGCACTGTTAAGAA
40687 TGCATCGATGCACT
1 TGCATCGATGCACT
40701 TCAAGGGGAA
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
20 18 0.53
22 1 0.03
23 2 0.06
24 13 0.38
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (22 bp):
TGCATCGATGCACTGTTAAGAA
Found at i:41629 original size:31 final size:31
Alignment explanation
Indices: 41591--41652 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 31
41581 AGAGTCGAGG
* *
41591 GTTTACCTATG-TCTTTCGAGATATATGGACA
1 GTTTACCTAGGTTC-TTCGAGACATATGGACA
*
41622 GTTTACCTAGGTTCTTCGAGACCTATGGACA
1 GTTTACCTAGGTTCTTCGAGACATATGGACA
41653 ATTGCCGAGG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
31 25 0.93
32 2 0.07
ACGTcount: A:0.24, C:0.19, G:0.21, T:0.35
Consensus pattern (31 bp):
GTTTACCTAGGTTCTTCGAGACATATGGACA
Found at i:41675 original size:30 final size:30
Alignment explanation
Indices: 41624--41709 Score: 93
Period size: 30 Copynumber: 2.9 Consensus size: 30
41614 TATGGACAGT
* * * *
41624 TTACCTAGGTTCTTCGAGACCTATGGACAA
1 TTACCGAGGTTCTTTGTGACCTCTGGACAA
* * *
41654 TTGCCGAGGTTCTTTGTGACCTCTGGATAG
1 TTACCGAGGTTCTTTGTGACCTCTGGACAA
*
41684 TTACCG-GGATCTTTGTGACCTCTGGA
1 TTACCGAGGTTCTTTGTGACCTCTGGA
41710 TAGGTCCTTC
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
29 19 0.40
30 28 0.60
ACGTcount: A:0.19, C:0.22, G:0.26, T:0.34
Consensus pattern (30 bp):
TTACCGAGGTTCTTTGTGACCTCTGGACAA
Found at i:45305 original size:35 final size:36
Alignment explanation
Indices: 45242--45340 Score: 89
Period size: 35 Copynumber: 2.8 Consensus size: 36
45232 TGAAATAAAA
* **
45242 ATATTATAAATTATATTAATT-ATTTATTAAAGTAAT
1 ATATTATAAA-TATATTTATTAAAATATTAAAGTAAT
* * *
45278 AGTGTTAT-ATTATATTT-TTAAAATATT-AATTAAT
1 A-TATTATAAATATATTTATTAAAATATTAAAGTAAT
*
45312 ATATTTTAAATATATTTATTAAAATATTA
1 ATATTATAAATATATTTATTAAAATATTA
45341 TTAGATTAAT
Statistics
Matches: 49, Mismatches: 9, Indels: 10
0.72 0.13 0.15
Matches are distributed among these distances:
33 4 0.08
34 17 0.35
35 21 0.43
36 2 0.04
37 5 0.10
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (36 bp):
ATATTATAAATATATTTATTAAAATATTAAAGTAAT
Found at i:45315 original size:12 final size:12
Alignment explanation
Indices: 45295--45340 Score: 51
Period size: 12 Copynumber: 3.9 Consensus size: 12
45285 TATTATATTT
45295 TTAAAATATTAA
1 TTAAAATATTAA
*
45307 TTAATATATT--
1 TTAAAATATTAA
*
45317 TTAAATATATTTA
1 TTAAA-ATATTAA
45330 TTAAAATATTA
1 TTAAAATATTA
45341 TTAGATTAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
10 4 0.14
11 5 0.18
12 14 0.50
13 5 0.18
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (12 bp):
TTAAAATATTAA
Found at i:45317 original size:23 final size:24
Alignment explanation
Indices: 45288--45339 Score: 72
Period size: 23 Copynumber: 2.2 Consensus size: 24
45278 AGTGTTATAT
45288 TATATTTTTAAA-ATATTAATTAA
1 TATATTTTTAAATATATTAATTAA
*
45311 TATA-TTTTAAATATATTTATTAA
1 TATATTTTTAAATATATTAATTAA
*
45334 AATATT
1 TATATT
45340 ATTAGATTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 7 0.28
23 17 0.68
24 1 0.04
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (24 bp):
TATATTTTTAAATATATTAATTAA
Found at i:45341 original size:11 final size:11
Alignment explanation
Indices: 45289--45374 Score: 61
Period size: 11 Copynumber: 7.7 Consensus size: 11
45279 GTGTTATATT
*
45289 ATATTTTTAAA
1 ATATTATTAAA
*
45300 ATATTAATTAAT
1 ATATT-ATTAAA
45312 ATATT-TTAAA
1 ATATTATTAAA
45322 TATATTTATTAAA
1 -ATA-TTATTAAA
*
45335 ATATTATTAGA
1 ATATTATTAAA
* *
45346 TTAATATT-AA
1 ATATTATTAAA
*
45356 AT-TTATAAATA
1 ATATTATTAA-A
45367 ATATTATT
1 ATATTATT
45375 CATTATTAAT
Statistics
Matches: 57, Mismatches: 11, Indels: 13
0.70 0.14 0.16
Matches are distributed among these distances:
9 3 0.05
10 7 0.12
11 24 0.42
12 18 0.32
13 5 0.09
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (11 bp):
ATATTATTAAA
Found at i:45356 original size:35 final size:34
Alignment explanation
Indices: 45288--45357 Score: 90
Period size: 35 Copynumber: 2.0 Consensus size: 34
45278 AGTGTTATAT
*
45288 TATATTTTTAAAATATTAATTAATATATTTTAAA
1 TATATTTTTAAAATATTAATTAATATATATTAAA
45322 TATATTTATTAAAATATT-ATTAGAT-TAATATTAAA
1 TATATTT-TTAAAATATTAATTA-ATAT-ATATTAAA
45357 T
1 T
45358 TTATAAATAA
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
34 12 0.38
35 20 0.62
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.51
Consensus pattern (34 bp):
TATATTTTTAAAATATTAATTAATATATATTAAA
Found at i:45420 original size:27 final size:26
Alignment explanation
Indices: 45353--45424 Score: 74
Period size: 27 Copynumber: 2.7 Consensus size: 26
45343 AGATTAATAT
*
45353 TAAATTTATAAATAATATTATTCATTA
1 TAAATTAATAAATAATATTATTCA-TA
* * *
45380 TTAA-TAATTTAATAATATTATTTATA
1 TAAATTAA-TAAATAATATTATTCATA
45406 TGAAATTAATAAATAATAT
1 T-AAATTAATAAATAATAT
45425 AAATTTTATT
Statistics
Matches: 36, Mismatches: 6, Indels: 6
0.75 0.12 0.12
Matches are distributed among these distances:
26 5 0.14
27 28 0.78
28 3 0.08
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.47
Consensus pattern (26 bp):
TAAATTAATAAATAATATTATTCATA
Found at i:45422 original size:54 final size:54
Alignment explanation
Indices: 45349--45455 Score: 146
Period size: 54 Copynumber: 2.0 Consensus size: 54
45339 TATTAGATTA
* * *
45349 ATATTAAATTTATAAATAATAT-TATTCATTATTAATAATTTAATA-ATATTATTT
1 ATATGAAATTAATAAATAATATAAATT--TTATTAATAATTTAATATATATTATTT
*
45403 ATATGAAATTAATAAATAATATAAATTTTATTAATAATTTATTATATATTATT
1 ATATGAAATTAATAAATAATATAAATTTTATTAATAATTTAATATATATTATT
45456 AAAATAAAAA
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
53 16 0.34
54 28 0.60
55 3 0.06
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.50
Consensus pattern (54 bp):
ATATGAAATTAATAAATAATATAAATTTTATTAATAATTTAATATATATTATTT
Found at i:46084 original size:13 final size:13
Alignment explanation
Indices: 46066--46092 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
46056 CATCGTTGAA
46066 CAGTCTTCATATG
1 CAGTCTTCATATG
46079 CAGTCTTCATATG
1 CAGTCTTCATATG
46092 C
1 C
46093 GCGTATGTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.26, G:0.15, T:0.37
Consensus pattern (13 bp):
CAGTCTTCATATG
Found at i:55539 original size:5 final size:5
Alignment explanation
Indices: 55529--55559 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
55519 TGGAGATGAT
55529 GGAGG GGAGG GGAGG GGAGG GGAGG GGAGG G
1 GGAGG GGAGG GGAGG GGAGG GGAGG GGAGG G
55560 AGAATATGGC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.19, C:0.00, G:0.81, T:0.00
Consensus pattern (5 bp):
GGAGG
Found at i:57996 original size:17 final size:18
Alignment explanation
Indices: 57974--58007 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
57964 TCAGCCGGTC
57974 CGGTTC-GAACGGTTCAG
1 CGGTTCTGAACGGTTCAG
*
57991 CGGTTCTGACCGGTTCA
1 CGGTTCTGAACGGTTCA
58008 CTAGTAGCGG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.15, C:0.26, G:0.32, T:0.26
Consensus pattern (18 bp):
CGGTTCTGAACGGTTCAG
Found at i:59132 original size:138 final size:137
Alignment explanation
Indices: 58978--59242 Score: 345
Period size: 138 Copynumber: 1.9 Consensus size: 137
58968 TCATATTTTA
* * * * *
58978 AATATATATTTATTTTTCAATATTATGAAA-GGGCAGTCTTAAAGCAACTGGATGTCCA-TTTTC
1 AATATATATGTATTTTTCAATATTAAGAAATGAGCAGTCTTAAAGCAACTAGAAGT--ATTTTTC
** *
59041 TGATATTTTTAAATAAATAAATATTTTACTTTTATAAATTATATATATTAATCTATTTTTAATAA
64 TGATATACTTAAATAAATAAATATTCTACTTTTATAAATTATATATATTAATCTA-TTTTAATAA
59106 ATGTTTTATT
128 ATGTTTTATT
* ** ** *
59116 AATATTTATGTATTTTTTTATATTAAGAAATGAGTTGTCTTAAAGCACCTAGAAGTATTTTTCTG
1 AATATATATGTATTTTTCAATATTAAGAAATGAGCAGTCTTAAAGCAACTAGAAGTATTTTTCTG
* *
59181 ATATACTTAAATAAATAAATATTCTATTTTTATAAATTATATATATTAATTTATTTTAATAA
66 ATATACTTAAATAAATAAATATTCTACTTTTATAAATTATATATATTAATCTATTTTAATAA
59243 TTTTTAGAGA
Statistics
Matches: 109, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
137 10 0.09
138 80 0.73
139 19 0.17
ACGTcount: A:0.38, C:0.06, G:0.08, T:0.48
Consensus pattern (137 bp):
AATATATATGTATTTTTCAATATTAAGAAATGAGCAGTCTTAAAGCAACTAGAAGTATTTTTCTG
ATATACTTAAATAAATAAATATTCTACTTTTATAAATTATATATATTAATCTATTTTAATAAATG
TTTTATT
Found at i:68467 original size:23 final size:22
Alignment explanation
Indices: 68419--68498 Score: 92
Period size: 23 Copynumber: 3.7 Consensus size: 22
68409 TAGGGCAGAA
* * *
68419 GGAATCGATACCCCCTTTAAGA
1 GGAACCGATTCCCCCTTTAAGG
68441 GGAACCGATTCCCCCTTTGAAGG
1 GGAACCGATTCCCCCTTT-AAGG
*
68464 GGAACCGATTCCCCC-CT-AGG
1 GGAACCGATTCCCCCTTTAAGG
*
68484 GGAACTGATTCCCCC
1 GGAACCGATTCCCCC
68499 CTGGGGTTCT
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
20 17 0.33
22 17 0.33
23 18 0.35
ACGTcount: A:0.24, C:0.34, G:0.23, T:0.20
Consensus pattern (22 bp):
GGAACCGATTCCCCCTTTAAGG
Found at i:68504 original size:19 final size:20
Alignment explanation
Indices: 68441--68504 Score: 76
Period size: 20 Copynumber: 3.1 Consensus size: 20
68431 CCCTTTAAGA
*
68441 GGAACCGATTCCCCCTTTGAAGG
1 GGAACCGATTCCCCC-CT--AGG
68464 GGAACCGATTCCCCCCTAGG
1 GGAACCGATTCCCCCCTAGG
*
68484 GGAACTGATTCCCCCCT-GG
1 GGAACCGATTCCCCCCTAGG
68503 GG
1 GG
68505 TTCTGGTTTT
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
19 4 0.10
20 19 0.49
22 1 0.03
23 15 0.38
ACGTcount: A:0.19, C:0.34, G:0.28, T:0.19
Consensus pattern (20 bp):
GGAACCGATTCCCCCCTAGG
Found at i:72077 original size:125 final size:125
Alignment explanation
Indices: 71855--72104 Score: 500
Period size: 125 Copynumber: 2.0 Consensus size: 125
71845 CGTCAATCGA
71855 TTAACTCAACAAAGTTGTTCTGAATCTAAAAATAAGCTCAATTTCCAGCCAGAGAAAAAAATATG
1 TTAACTCAACAAAGTTGTTCTGAATCTAAAAATAAGCTCAATTTCCAGCCAGAGAAAAAAATATG
71920 ATGATGCAGACTACTCATGAGGAAGAAGAGATTTATCTGAAAGTTTATCCAAATGACTTG
66 ATGATGCAGACTACTCATGAGGAAGAAGAGATTTATCTGAAAGTTTATCCAAATGACTTG
71980 TTAACTCAACAAAGTTGTTCTGAATCTAAAAATAAGCTCAATTTCCAGCCAGAGAAAAAAATATG
1 TTAACTCAACAAAGTTGTTCTGAATCTAAAAATAAGCTCAATTTCCAGCCAGAGAAAAAAATATG
72045 ATGATGCAGACTACTCATGAGGAAGAAGAGATTTATCTGAAAGTTTATCCAAATGACTTG
66 ATGATGCAGACTACTCATGAGGAAGAAGAGATTTATCTGAAAGTTTATCCAAATGACTTG
72105 ACGCAAGAAA
Statistics
Matches: 125, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
125 125 1.00
ACGTcount: A:0.41, C:0.15, G:0.17, T:0.27
Consensus pattern (125 bp):
TTAACTCAACAAAGTTGTTCTGAATCTAAAAATAAGCTCAATTTCCAGCCAGAGAAAAAAATATG
ATGATGCAGACTACTCATGAGGAAGAAGAGATTTATCTGAAAGTTTATCCAAATGACTTG
Found at i:78260 original size:37 final size:37
Alignment explanation
Indices: 78213--78334 Score: 120
Period size: 37 Copynumber: 3.3 Consensus size: 37
78203 ACAAACTGCG
*
78213 TCTCGCTTGAGACAGTTTCACTCGAAACAACAATTTA
1 TCTCACTTGAGACAGTTTCACTCGAAACAACAATTTA
** ** ** *****
78250 TCTCACTTGAGATTGTTTTTCTTAAAACAA-ACCGCG
1 TCTCACTTGAGACAGTTTCACTCGAAACAACAATTTA
*
78286 TCTCGCTTGAGACAGTTTCACTCGAAACAACAATTTA
1 TCTCACTTGAGACAGTTTCACTCGAAACAACAATTTA
78323 TCTCACTTGAGA
1 TCTCACTTGAGA
78335 TTGTTTTTTC
Statistics
Matches: 59, Mismatches: 25, Indels: 2
0.69 0.29 0.02
Matches are distributed among these distances:
36 24 0.41
37 35 0.59
ACGTcount: A:0.30, C:0.24, G:0.14, T:0.32
Consensus pattern (37 bp):
TCTCACTTGAGACAGTTTCACTCGAAACAACAATTTA
Found at i:78314 original size:36 final size:36
Alignment explanation
Indices: 78201--78315 Score: 113
Period size: 36 Copynumber: 3.2 Consensus size: 36
78191 GTTTTTCTTA
78201 AAACAAACTGCGTCTCGCTTGAGACAGTTTCACTCG
1 AAACAAACTGCGTCTCGCTTGAGACAGTTTCACTCG
* *** * ** ** **
78237 AAACAACAATTTATCTCACTTGAGATTGTTTTTCTTA
1 AAACAA-ACTGCGTCTCGCTTGAGACAGTTTCACTCG
*
78274 AAACAAACCGCGTCTCGCTTGAGACAGTTTCACTCG
1 AAACAAACTGCGTCTCGCTTGAGACAGTTTCACTCG
78310 AAACAA
1 AAACAA
78316 CAATTTATCT
Statistics
Matches: 55, Mismatches: 23, Indels: 2
0.69 0.29 0.03
Matches are distributed among these distances:
36 30 0.55
37 25 0.45
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29
Consensus pattern (36 bp):
AAACAAACTGCGTCTCGCTTGAGACAGTTTCACTCG
Found at i:78403 original size:74 final size:73
Alignment explanation
Indices: 78174--78388 Score: 360
Period size: 73 Copynumber: 2.9 Consensus size: 73
78164 TAAATAGTAA
* *
78174 TTATCTCATTTAAGATTGTTTTTCTTAAAACAAACTGCGTCTCGCTTGAGACAGTTTCACTCGAA
1 TTATCTCACTTGAGATTGTTTTTCTTAAAACAAACTGCGTCTCGCTTGAGACAGTTTCACTCGAA
78239 ACAACAAT
66 ACAACAAT
*
78247 TTATCTCACTTGAGATTGTTTTTCTTAAAACAAACCGCGTCTCGCTTGAGACAGTTTCACTCGAA
1 TTATCTCACTTGAGATTGTTTTTCTTAAAACAAACTGCGTCTCGCTTGAGACAGTTTCACTCGAA
78312 ACAACAAT
66 ACAACAAT
* *
78320 TTATCTCACTTGAGATTGTTTTTTCTTAAAACAAGA-TTCGTCTCGCTTGAGACAGTTTCACTAG
1 TTATCTCACTTGAGATTG-TTTTTCTTAAAACAA-ACTGCGTCTCGCTTGAGACAGTTTCACTCG
78384 AAACA
64 AAACA
78389 GAAATTTCCA
Statistics
Matches: 134, Mismatches: 6, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
73 88 0.66
74 45 0.34
75 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.13, T:0.35
Consensus pattern (73 bp):
TTATCTCACTTGAGATTGTTTTTCTTAAAACAAACTGCGTCTCGCTTGAGACAGTTTCACTCGAA
ACAACAAT
Found at i:78799 original size:115 final size:119
Alignment explanation
Indices: 78410--78971 Score: 707
Period size: 118 Copynumber: 4.7 Consensus size: 119
78400 CACTCGATGG
* ** *
78410 ATCAACTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAAGAAGTTCATA
1 ATCAACATTTCCAGA-AGTGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATA
*
78475 ATGAGAAGAACTTGTTCAAC-TTTTGCAT-GACTCTATCACAGAAGCAGATAGATCAGC
65 ATGAGAAGAACTTGTTCAACTTTTTGC-TCGATTCTATCAC--AAG-AGATAGATCAGC
*
78532 ATCAACATTTCCAGAAGTGTTCATAATGAGAAAAACTCATCTG-A-A-GAAGAAGAAGTTCATAA
1 ATCAACATTTCCAGAAGTGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATAA
* * *
78594 TGGGAAGAACTTGTTCAACTTTTTGCTCGATTTTATCACAGAAAGAGATAGATCA-T
66 TGAGAAGAACTTGTTCAACTTTTTGCTCGATTCTATCAC---AAGAGATAGATCAGC
*
78650 ATCAACATTTCCAGAAGTGTTCATAATGAGAAGAACTCATCTGAAGAGGAATAAGAAGTTCAT-A
1 ATCAACATTTCCAGAAGTGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATAA
*
78714 TGAGAAGAAAC-TGTTC-ACTTTTTGCTCAATTCTATCAC-AGA-ATAGATCAGC
66 TGAGAAG-AACTTGTTCAACTTTTTGCTCGATTCTATCACAAGAGATAGATCAGC
* *
78765 ATCAACATTTCCAGAAGTGTTCATAATGAGAAGAACTCATCTGAAAAGAAAGAAGAAGTTCATAA
1 ATCAACATTTCCAGAAGTGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATAA
* * ** *
78830 TGAGAAGAATTTATTCAACCATTTGCTCGATTCTATCACATA-AGATAGATCAAC
66 TGAGAAGAACTTGTTCAACTTTTTGCTCGATTCTATCACA-AGAGATAGATCAGC
* * * * * * *
78884 ATCCACGTTTCCAAAAGGAGTTCATAATGAGAAGAGCTCATCTGAAGAGAAAAAAGAAGTTCATA
1 ATCAACATTTCCAGAA-GTGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATA
*
78949 ATGAGAAGAACTTGTTCGACTTT
65 ATGAGAAGAACTTGTTCAACTTT
78972 AGCTTGATTC
Statistics
Matches: 388, Mismatches: 37, Indels: 32
0.85 0.08 0.07
Matches are distributed among these distances:
114 8 0.02
115 65 0.17
116 12 0.03
117 19 0.05
118 79 0.20
119 70 0.18
120 79 0.20
121 42 0.11
122 14 0.04
ACGTcount: A:0.40, C:0.16, G:0.18, T:0.27
Consensus pattern (119 bp):
ATCAACATTTCCAGAAGTGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATAA
TGAGAAGAACTTGTTCAACTTTTTGCTCGATTCTATCACAAGAGATAGATCAGC
Found at i:80940 original size:31 final size:31
Alignment explanation
Indices: 80918--81026 Score: 200
Period size: 31 Copynumber: 3.5 Consensus size: 31
80908 ATAGATTCCA
* *
80918 AAGAACCTAGGTAATCAGTCCATATGTCCCG
1 AAGAACATAGGTAAACAGTCCATATGTCCCG
80949 AAGAACATAGGTAAACAGTCCATATGTCCCG
1 AAGAACATAGGTAAACAGTCCATATGTCCCG
80980 AAGAACATAGGTAAACAGTCCATATGTCCCG
1 AAGAACATAGGTAAACAGTCCATATGTCCCG
81011 AAGAACATAGGTAAAC
1 AAGAACATAGGTAAAC
81027 CCTCGACCCT
Statistics
Matches: 76, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 76 1.00
ACGTcount: A:0.39, C:0.22, G:0.19, T:0.19
Consensus pattern (31 bp):
AAGAACATAGGTAAACAGTCCATATGTCCCG
Found at i:83766 original size:138 final size:141
Alignment explanation
Indices: 83604--83995 Score: 437
Period size: 147 Copynumber: 2.8 Consensus size: 141
83594 AAAAATAATC
* * * * *
83604 ATATTTTA--AATATATATTTATTTTTCAATATTAAGAAA-GGACAGTCTTAAAGCAACTGGATG
1 ATATTTTATTAATATTTATTTATTTTT-AATATTAAGAAATGGA-TGTCTTAAAGCACCTAGAAG
*
83666 TCCATTTTCTGATATTTTTAAATAAATAAATATTTTACTTTTATAAATTATATATATT-A-A-T-
64 TCCATTTTCTGATATTTTTAAATAAATAAATATCTTA-TTTTATAAATTATATATATTAATATTA
*
83727 CTATTTTTA-ATAA
128 CTATTTTTAGAGAA
* * * *
83740 ATGTTTTATTAATATTTATGTATTTTTTTATATTAAGAAATGGGATGTATTAAAGCACCTAGAAG
1 ATATTTTATTAATATTTATTTA-TTTTTAATATTAAGAAAT-GGATGTCTTAAAGCACCTAGAAG
** *
83805 TCC-TTTTCTGATATACTTAAATAAATAAATATCCTATTTTTATAAATTATATATATTAATTTAT
64 TCCATTTTCTGATATTTTTAAATAAATAAATATCTTA-TTTTATAAATTATATATATTAA--TA-
*
83869 TTTAATTATTTTTAGAGAA
125 -TT-ACTATTTTTAGAGAA
*
83888 ATATTTTATTAATATTTATTTATTTTTAATATTAAGAAATGGGTTGTCTTAAAGCACCTAGAAGT
1 ATATTTTATTAATATTTATTTATTTTTAATATTAAGAAAT-GGATGTCTTAAAGCACCTAGAAGT
* *
83953 -CATTTTCTGATATTTCTAAGTAAATAAATATCTTA-TTTATAAA
65 CCATTTTCTGATATTTTTAAATAAATAAATATCTTATTTTATAAA
83996 AATATAAATA
Statistics
Matches: 214, Mismatches: 26, Indels: 23
0.81 0.10 0.09
Matches are distributed among these distances:
136 7 0.03
138 70 0.33
139 24 0.11
140 3 0.01
142 1 0.00
145 9 0.04
146 1 0.00
147 76 0.36
148 23 0.11
ACGTcount: A:0.38, C:0.07, G:0.08, T:0.47
Consensus pattern (141 bp):
ATATTTTATTAATATTTATTTATTTTTAATATTAAGAAATGGATGTCTTAAAGCACCTAGAAGTC
CATTTTCTGATATTTTTAAATAAATAAATATCTTATTTTATAAATTATATATATTAATATTACTA
TTTTTAGAGAA
Found at i:86788 original size:8 final size:8
Alignment explanation
Indices: 86747--86852 Score: 62
Period size: 8 Copynumber: 13.6 Consensus size: 8
86737 TAGTAAGGTA
86747 TAATTATT
1 TAATTATT
* *
86755 TTATAATT
1 TAATTATT
86763 TATATT-TT
1 TA-ATTATT
86771 T-ATTCA-T
1 TAATT-ATT
86778 TAATTATT
1 TAATTATT
86786 TAATTATT
1 TAATTATT
* *
86794 TAAGTAAT
1 TAATTATT
*
86802 TAAATATT
1 TAATTATT
*
86810 TTATTA-T
1 TAATTATT
*
86817 TATTTTATT
1 TA-ATTATT
* *
86826 TTAGTATT
1 TAATTATT
86834 T-ATTATT
1 TAATTATT
86841 T-ATTATT
1 TAATTATT
86848 TAATT
1 TAATT
86853 GTAAACTTAT
Statistics
Matches: 74, Mismatches: 16, Indels: 16
0.70 0.15 0.15
Matches are distributed among these distances:
6 3 0.04
7 18 0.24
8 49 0.66
9 4 0.05
ACGTcount: A:0.34, C:0.01, G:0.02, T:0.63
Consensus pattern (8 bp):
TAATTATT
Found at i:86817 original size:32 final size:30
Alignment explanation
Indices: 86780--86852 Score: 76
Period size: 32 Copynumber: 2.4 Consensus size: 30
86770 TTATTCATTA
86780 ATTATTTAATTATTTAAGTAATTAAATATTTT
1 ATTATTTAATTATTTAAGT-ATTAAATA-TTT
* * * *
86812 ATTA-TTATTTTATTTTAGTATTTATTATTT
1 ATTATTTA-ATTATTTAAGTATTAAATATTT
86842 ATTATTTAATT
1 ATTATTTAATT
86853 GTAAACTTAT
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
30 9 0.26
31 12 0.35
32 13 0.38
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (30 bp):
ATTATTTAATTATTTAAGTATTAAATATTT
Found at i:89037 original size:33 final size:33
Alignment explanation
Indices: 89000--89076 Score: 93
Period size: 33 Copynumber: 2.3 Consensus size: 33
88990 TATTGAGAGT
**
89000 GATGATGACGATGAGGACAATGAGGAGGGGGAG
1 GATGATGACGATGAGGACAATGAGGAGAAGGAG
* *
89033 GATGA-GAACGATGATGACGATGAGGAGAAGGAG
1 GATGATG-ACGATGAGGACAATGAGGAGAAGGAG
*
89066 GAGGATGACGA
1 GATGATGACGA
89077 CAAAGAGGAC
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
32 1 0.03
33 35 0.95
34 1 0.03
ACGTcount: A:0.36, C:0.06, G:0.45, T:0.12
Consensus pattern (33 bp):
GATGATGACGATGAGGACAATGAGGAGAAGGAG
Found at i:89310 original size:83 final size:83
Alignment explanation
Indices: 89152--89689 Score: 530
Period size: 83 Copynumber: 6.5 Consensus size: 83
89142 GTGGAACATA
* * * *
89152 TTCCAGGGAAAGTGTTTTCCATTATTATTCAGAGAATCTCTGCCATTTCAGAGTGTTCCATCCCA
1 TTCCAGGGGAAGCGTTTTCCATTATTATTCAGAGAATCTCTGTCATGTCAGAGTGTTCCATCCCA
* * *
89217 TCTGACATGAAAGGCGCG
66 TCCGAAATGAAAGGCACG
* * *
89235 TTCTAGGGGAAGCGTTTTCTATTATTATTCAGAGAATCTCTGCCATGTCAGAGTGTTCCATCCCA
1 TTCCAGGGGAAGCGTTTTCCATTATTATTCAGAGAATCTCTGTCATGTCAGAGTGTTCCATCCCA
89300 TCCGAAATGAAATGTGCA--
66 TCCGAAATGAAA-G-GCACG
* * ** * *
89318 TTTCAAGAAAAGCGTTTTCCATTGTTATTCAGAGAATCTCTGTCATGTCAGAGTGTTCTATCCCA
1 TTCCAGGGGAAGCGTTTTCCATTATTATTCAGAGAATCTCTGTCATGTCAGAGTGTTCCATCCCA
* * *
89383 TACAAAATGAAAGGCACA
66 TCCGAAATGAAAGGCACG
* ** * * * * * * *
89401 TTCTAAAGGAAACATTTTCCATTGTTATTTAGAGAATCTCTGTCATGTCATAGTGTTTCATCTCA
1 TTCCAGGGGAAGCGTTTTCCATTATTATTCAGAGAATCTCTGTCATGTCAGAGTGTTCCATCCCA
* * *
89466 TTCGAAATGAAAAGGTATG
66 TCCGAAATG-AAAGGCACG
* * * * * * *
89485 TTCCAGGGGAAGTGTTTTCCATTATTATTTAGATAATATATGTCATGTCATAGTGTTTCATCCCA
1 TTCCAGGGGAAGCGTTTTCCATTATTATTCAGAGAATCTCTGTCATGTCAGAGTGTTCCATCCCA
* *
89550 TCCGAAA-GAAAAGGAATG
66 TCCGAAATG-AAAGGCACG
* ** * * * *
89568 TCCCAGGGGAAGATTTTTCCATTATTATTCAGAGAATCTCTATGATTTCATAGTGTTCCATCCCA
1 TTCCAGGGGAAGCGTTTTCCATTATTATTCAGAGAATCTCTGTCATGTCAGAGTGTTCCATCCCA
* * *
89633 TCCAAAATGAAATGCGCG
66 TCCGAAATGAAAGGCACG
*
89651 TTCCAGGGGAAGTGTTTT-C--TATTATTCAGAGAATCTCTG
1 TTCCAGGGGAAGCGTTTTCCATTATTATTCAGAGAATCTCTG
89690 CCATTTCACA
Statistics
Matches: 380, Mismatches: 69, Indels: 15
0.82 0.15 0.03
Matches are distributed among these distances:
80 19 0.05
81 3 0.01
82 2 0.01
83 286 0.75
84 68 0.18
85 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.34
Consensus pattern (83 bp):
TTCCAGGGGAAGCGTTTTCCATTATTATTCAGAGAATCTCTGTCATGTCAGAGTGTTCCATCCCA
TCCGAAATGAAAGGCACG
Found at i:89606 original size:250 final size:249
Alignment explanation
Indices: 89166--89644 Score: 577
Period size: 250 Copynumber: 1.9 Consensus size: 249
89156 AGGGAAAGTG
* *
89166 TTTTCCATTATTATTCAGAGAATCTCTGCCATTTCAGAGTGTTCCATCCCATCTGACATGAAAGG
1 TTTTCCATTATTATTCAGAGAATCTCTGCCATGTCAGAGTGTTCCATCCCATCTGAAATGAAAGG
* * * * *
89231 CGCGTTCTAGGGGAAGCGTTTTCTATTATTATTCAGAGAATCTCTGCCATGTCAGAGTGTTCCAT
66 CACGTTCCAGGGGAAGCGTTTTCCATTATTATTCAGAGAATATATGCCATGTCAGAGTGTTCCAT
* * * * * *
89296 CCCATCCGAAATGAAATGTGCATTTCAAGAAAAGCGTTTTCCATTGTTATTCAGAGAATCTCTGT
131 CCCATCCGAAATGAAAAGTGAATTCCAAGAAAAGAGTTTTCCATTATTATTCAGAGAATCTCTAT
*
89361 CATGTCAGAGTGTTCTATCCCATACAAAATGAAAGGCACATTCTAAAGGAAACA
196 CATGTCAGAGTGTTCCATCCCATACAAAATGAAAGGCACATTCTAAAGGAAACA
* * * * * *
89415 TTTTCCATTGTTATTTAGAGAATCTCTGTCATGTCATAGTGTTTCATCTCAT-TCGAAATGAAAA
1 TTTTCCATTATTATTCAGAGAATCTCTGCCATGTCAGAGTGTTCCATCCCATCT-GAAATG-AAA
* * * * * * * *
89479 GGTATGTTCCAGGGGAAGTGTTTTCCATTATTATTTAGATAATATATGTCATGTCATAGTGTTTC
64 GGCACGTTCCAGGGGAAGCGTTTTCCATTATTATTCAGAGAATATATGCCATGTCAGAGTGTTCC
* ** *
89544 ATCCCATCCGAAA-GAAAAG-GAATGTCCCAGGGGAAGATTTTTCCATTATTATTCAGAGAATCT
129 ATCCCATCCGAAATGAAAAGTGAAT-T-CCAAGAAAAGAGTTTTCCATTATTATTCAGAGAATCT
* * * *
89607 CTATGATTTCATAGTGTTCCATCCCATCCAAAATGAAA
192 CTATCATGTCAGAGTGTTCCATCCCATACAAAATGAAA
89645 TGCGCGTTCC
Statistics
Matches: 190, Mismatches: 36, Indels: 7
0.82 0.15 0.03
Matches are distributed among these distances:
248 4 0.02
249 56 0.29
250 130 0.68
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.34
Consensus pattern (249 bp):
TTTTCCATTATTATTCAGAGAATCTCTGCCATGTCAGAGTGTTCCATCCCATCTGAAATGAAAGG
CACGTTCCAGGGGAAGCGTTTTCCATTATTATTCAGAGAATATATGCCATGTCAGAGTGTTCCAT
CCCATCCGAAATGAAAAGTGAATTCCAAGAAAAGAGTTTTCCATTATTATTCAGAGAATCTCTAT
CATGTCAGAGTGTTCCATCCCATACAAAATGAAAGGCACATTCTAAAGGAAACA
Found at i:89806 original size:24 final size:24
Alignment explanation
Indices: 89774--89820 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
89764 CTCTAAAATC
89774 TAAAACTCTCAAACAT-TCAAACTT
1 TAAAACTCTCAAAC-TCTCAAACTT
*
89798 TAAAACTCTTAAACTCTCAAACT
1 TAAAACTCTCAAACTCTCAAACT
89821 AATAAAATGG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.45, C:0.26, G:0.00, T:0.30
Consensus pattern (24 bp):
TAAAACTCTCAAACTCTCAAACTT
Found at i:89826 original size:16 final size:16
Alignment explanation
Indices: 89776--89826 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
89766 CTAAAATCTA
89776 AAACTCTCAAAC-ATT
1 AAACTCTCAAACTATT
* * *
89791 CAAACTTTAAAACTCTT
1 -AAACTCTCAAACTATT
*
89808 AAACTCTCAAACTAAT
1 AAACTCTCAAACTATT
89824 AAA
1 AAA
89827 ATGGCTCATA
Statistics
Matches: 27, Mismatches: 7, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
16 25 0.93
17 2 0.07
ACGTcount: A:0.49, C:0.24, G:0.00, T:0.27
Consensus pattern (16 bp):
AAACTCTCAAACTATT
Found at i:93086 original size:57 final size:57
Alignment explanation
Indices: 93022--93162 Score: 237
Period size: 57 Copynumber: 2.5 Consensus size: 57
93012 CTAAAGTAAA
* *
93022 AAAGAAAAATATATGTGAAAGGAATTAAACTAAAGTAAGGCTAGAAACTTTAGGCAT
1 AAAGAAAAATATATGTAAAAGGAATTAAACTAAAGTAAGGCTAGAAACTTTAGGAAT
*
93079 AATGAAAAATATATGTAAAAGGAATTAAACTAAAGTAAGGCTAGAAACTTTAGGAAT
1 AAAGAAAAATATATGTAAAAGGAATTAAACTAAAGTAAGGCTAGAAACTTTAGGAAT
* *
93136 AAAGAAATATATGTGTAAAAGGAATTA
1 AAAGAAAAATATATGTAAAAGGAATTA
93163 TTTTAGGCAT
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
57 78 1.00
ACGTcount: A:0.52, C:0.05, G:0.18, T:0.24
Consensus pattern (57 bp):
AAAGAAAAATATATGTAAAAGGAATTAAACTAAAGTAAGGCTAGAAACTTTAGGAAT
Found at i:93180 original size:37 final size:37
Alignment explanation
Indices: 93127--93199 Score: 110
Period size: 37 Copynumber: 2.0 Consensus size: 37
93117 GGCTAGAAAC
* *
93127 TTTAGGAATAAAGAAATATATGTGTAAAAGGAATTAT
1 TTTAGGAATAAAGAAATATATATGTAAAAAGAATTAT
* *
93164 TTTAGGCATAACGAAATATATATGTAAAAAGAATTA
1 TTTAGGAATAAAGAAATATATATGTAAAAAGAATTA
93200 AACTAAAGTA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.49, C:0.03, G:0.16, T:0.32
Consensus pattern (37 bp):
TTTAGGAATAAAGAAATATATATGTAAAAAGAATTAT
Found at i:93250 original size:49 final size:49
Alignment explanation
Indices: 93178--93279 Score: 168
Period size: 49 Copynumber: 2.1 Consensus size: 49
93168 GGCATAACGA
*
93178 AATATATATGTAAAAAGAATTAAACTAAAGTAAGTCTAGAAACTTTAGG
1 AATATATATGTAAAAAGAATTAAACTAAAGTAAGGCTAGAAACTTTAGG
* **
93227 AATATATGTGTAAATGGAATTAAACTAAAGTAAGGCTAGAAACTTTAGG
1 AATATATATGTAAAAAGAATTAAACTAAAGTAAGGCTAGAAACTTTAGG
93276 AATA
1 AATA
93280 AAGAAATATA
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.49, C:0.06, G:0.17, T:0.28
Consensus pattern (49 bp):
AATATATATGTAAAAAGAATTAAACTAAAGTAAGGCTAGAAACTTTAGG
Found at i:93296 original size:143 final size:145
Alignment explanation
Indices: 93025--93298 Score: 426
Period size: 143 Copynumber: 1.9 Consensus size: 145
93015 AAGTAAAAAA
* *
93025 GAAAAATATATGTGAAAGGAATTAAACTAAAGTAAGGCTAGAAACTTTAGGCATAATGAAAAATA
1 GAAAAATATATGTAAAAAGAATTAAACTAAAGTAAGGCTAGAAACTTTAGG-A-AAT----AATA
93090 TATGTAAAAGGAATTAAACTAAAGTAAGGCTAGAAACTTTAGGAATAAAGAAATATATGTGTAAA
60 TATGTAAAAGGAATTAAACTAAAGTAAGGCTAGAAACTTTAGGAATAAAGAAATATATGTGTAAA
93155 AGGAATTATTTTAGGCATAAC
125 AGGAATTATTTTAGGCATAAC
* * *
93176 GAAATATATATGTAAAAAGAATTAAACTAAAGTAAGTCTAGAAACTTTAGG-AAT-ATATGTGTA
1 GAAAAATATATGTAAAAAGAATTAAACTAAAGTAAGGCTAGAAACTTTAGGAAATAATATATGTA
*
93239 AATGGAATTAAACTAAAGTAAGGCTAGAAACTTTAGGAATAAAGAAATATATGTGTAAAA
66 AAAGGAATTAAACTAAAGTAAGGCTAGAAACTTTAGGAATAAAGAAATATATGTGTAAAA
93299 ATCATTATGT
Statistics
Matches: 117, Mismatches: 6, Indels: 8
0.89 0.05 0.06
Matches are distributed among these distances:
143 67 0.57
148 3 0.03
151 47 0.40
ACGTcount: A:0.50, C:0.05, G:0.18, T:0.27
Consensus pattern (145 bp):
GAAAAATATATGTAAAAAGAATTAAACTAAAGTAAGGCTAGAAACTTTAGGAAATAATATATGTA
AAAGGAATTAAACTAAAGTAAGGCTAGAAACTTTAGGAATAAAGAAATATATGTGTAAAAGGAAT
TATTTTAGGCATAAC
Found at i:95878 original size:15 final size:15
Alignment explanation
Indices: 95844--95890 Score: 60
Period size: 15 Copynumber: 3.2 Consensus size: 15
95834 CTTTCACCTA
*
95844 ATTTTAAAAATA-AC
1 ATTTTAATAATATAC
*
95858 ATTTTAATAATATAT
1 ATTTTAATAATATAC
*
95873 ATTTTAATTATATAC
1 ATTTTAATAATATAC
95888 ATT
1 ATT
95891 ATAAATATCT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
14 11 0.39
15 17 0.61
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (15 bp):
ATTTTAATAATATAC
Found at i:96664 original size:21 final size:20
Alignment explanation
Indices: 96638--96735 Score: 79
Period size: 21 Copynumber: 4.8 Consensus size: 20
96628 ATCAGTTTCC
96638 AAAATCGCAACGCGATTCTTA
1 AAAATCGCAACGCGATT-TTA
* **
96659 AAAATCGCAATGCGATAGTA
1 AAAATCGCAACGCGATTTTA
* ** *
96679 CAAATTCGCATTGCGATTTTCC
1 -AAAATCGCAACGCGATTTT-A
* * *
96701 AAAATCGCAACGCGAATATG
1 AAAATCGCAACGCGATTTTA
96721 AAAATCGCAACGCGA
1 AAAATCGCAACGCGA
96736 ACACATAAAT
Statistics
Matches: 61, Mismatches: 14, Indels: 5
0.76 0.17 0.06
Matches are distributed among these distances:
20 17 0.28
21 44 0.72
ACGTcount: A:0.39, C:0.22, G:0.17, T:0.21
Consensus pattern (20 bp):
AAAATCGCAACGCGATTTTA
Found at i:96764 original size:20 final size:20
Alignment explanation
Indices: 96702--96931 Score: 232
Period size: 20 Copynumber: 11.5 Consensus size: 20
96692 CGATTTTCCA
* ** *
96702 AAATCGCAACGCGAATATGA
1 AAATCGCAACGCGTATCCGT
* *
96722 AAATCGCAACGCG-AACACAT
1 AAATCGCAACGCGTATC-CGT
96742 AAATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
96762 AAATCGCAACGTGTATCCGT
1 AAATCGCAACGCGTATCCGT
**
96782 AAATCGCAACGCGTATGGGT
1 AAATCGCAACGCGTATCCGT
*
96802 AAATCGCAATGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
96822 ATATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
96842 AAATCGCAACG-ATAATCCGT
1 AAATCGCAACGCGT-ATCCGT
* * *
96862 AAATCGCAACGAGAATCTGT
1 AAATCGCAACGCGTATCCGT
*
96882 AAATCGCAACG-ATAATCCGT
1 AAATCGCAACGCGT-ATCCGT
* * *
96902 AAATCGCAACGAGAATCTGT
1 AAATCGCAACGCGTATCCGT
*
96922 AAATCACAAC
1 AAATCGCAAC
96932 ACTGAAATTT
Statistics
Matches: 176, Mismatches: 28, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
19 2 0.01
20 172 0.98
21 2 0.01
ACGTcount: A:0.37, C:0.25, G:0.19, T:0.20
Consensus pattern (20 bp):
AAATCGCAACGCGTATCCGT
Found at i:100170 original size:33 final size:34
Alignment explanation
Indices: 100119--100330 Score: 217
Period size: 33 Copynumber: 6.2 Consensus size: 34
100109 CGGAAATTAC
*
100119 AATCGCAACGA-GAGAATCGCAATGCGAAATGAA
1 AATCGCAACGATGAAAATCGCAATGCGAAATGAA
*
100152 AATCCCAAC-ATGAAAATCGCAATGCGGAAATGAA
1 AATCGCAACGATGAAAATCGCAATGC-GAAATGAA
*
100186 AATCGCAACGA-GAGAATCGCAATGCGAAATGAA
1 AATCGCAACGATGAAAATCGCAATGCGAAATGAA
*
100219 AATCGCAATGCGAAATGAAAATCGCAA--CG--A-GAG
1 AATCGCAA--CG--ATGAAAATCGCAATGCGAAATGAA
100252 AATCGCAATGCGAAATGAAAATCGCAATGCGGAAATGAA
1 AATCGCAA--CG--ATGAAAATCGCAATGC-GAAATGAA
* *
100291 AATCGCAACGA-GAGAATCGCAATGCGAAATTAA
1 AATCGCAACGATGAAAATCGCAATGCGAAATGAA
100324 AATCGCA
1 AATCGCA
100331 TTGCGATTCT
Statistics
Matches: 156, Mismatches: 9, Indels: 28
0.81 0.05 0.15
Matches are distributed among these distances:
32 1 0.01
33 80 0.51
34 43 0.28
35 5 0.03
36 3 0.02
37 3 0.02
38 11 0.07
39 10 0.06
ACGTcount: A:0.46, C:0.18, G:0.22, T:0.14
Consensus pattern (34 bp):
AATCGCAACGATGAAAATCGCAATGCGAAATGAA
Found at i:100246 original size:52 final size:53
Alignment explanation
Indices: 100161--100335 Score: 325
Period size: 53 Copynumber: 3.3 Consensus size: 53
100151 AAATCCCAAC
100161 ATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
100214 ATGAAAATCGCAATGC-GAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
100266 ATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
* *
100319 ATTAAAATCGCATTGCG
1 ATGAAAATCGCAATGCG
100336 ATTCTCTCGT
Statistics
Matches: 119, Mismatches: 2, Indels: 2
0.97 0.02 0.02
Matches are distributed among these distances:
52 52 0.44
53 67 0.56
ACGTcount: A:0.45, C:0.17, G:0.23, T:0.15
Consensus pattern (53 bp):
ATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
Found at i:100370 original size:53 final size:52
Alignment explanation
Indices: 100307--100422 Score: 169
Period size: 53 Copynumber: 2.2 Consensus size: 52
100297 AACGAGAGAA
*
100307 TCGCAATGCGAAATTAAAATCGCATTGCGATTCTCTCGTTGCGATTTTCATT
1 TCGCATTGCGAAATTAAAATCGCATTGCGATTCTCTCGTTGCGATTTTCATT
** * **
100359 TCCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATT
1 T-CGCATTGCGAAATTAAAATCGCATTGCGATTCTCTCGTTGCGATTTTCATT
100412 TCGCATTGCGA
1 TCGCATTGCGA
100423 TTTCATTTCG
Statistics
Matches: 57, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
52 11 0.19
53 46 0.81
ACGTcount: A:0.19, C:0.23, G:0.18, T:0.40
Consensus pattern (52 bp):
TCGCATTGCGAAATTAAAATCGCATTGCGATTCTCTCGTTGCGATTTTCATT
Found at i:100385 original size:19 final size:19
Alignment explanation
Indices: 100345--100441 Score: 134
Period size: 18 Copynumber: 5.4 Consensus size: 19
100335 GATTCTCTCG
100345 TTGCGATTTTCATTTCCGCA
1 TTGCGATTTTCATTT-CGCA
100365 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
100384 TTGCGA--TTC-TCTCG--
1 TTGCGATTTTCATTTCGCA
100398 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
100417 TTGCGA-TTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
100435 TTGCGAT
1 TTGCGAT
100442 AGTCATTTTT
Statistics
Matches: 69, Mismatches: 2, Indels: 13
0.82 0.02 0.15
Matches are distributed among these distances:
14 6 0.09
16 7 0.10
17 7 0.10
18 18 0.26
19 16 0.23
20 15 0.22
ACGTcount: A:0.14, C:0.23, G:0.18, T:0.45
Consensus pattern (19 bp):
TTGCGATTTTCATTTCGCA
Found at i:100449 original size:19 final size:18
Alignment explanation
Indices: 100326--100441 Score: 122
Period size: 18 Copynumber: 6.7 Consensus size: 18
100316 GAAATTAAAA
*
100326 TCGCATTGCGA-TTC-TC
1 TCGCATTGCGATTTCATT
100342 TCG--TTGCGATTTTCATT
1 TCGCATTGCGA-TTTCATT
100359 TCCGCATTGCGATTTTCATT
1 T-CGCATTGCGA-TTTCATT
*
100379 TCGCATTGCGA-TTC-TC
1 TCGCATTGCGATTTCATT
100395 TCG--TTGCGATTTTCATT
1 TCGCATTGCGA-TTTCATT
100412 TCGCATTGCGATTTCATT
1 TCGCATTGCGATTTCATT
100430 TCGCATTGCGAT
1 TCGCATTGCGAT
100442 AGTCATTTTT
Statistics
Matches: 86, Mismatches: 3, Indels: 20
0.79 0.03 0.18
Matches are distributed among these distances:
14 12 0.14
16 13 0.15
17 9 0.10
18 21 0.24
19 16 0.19
20 15 0.17
ACGTcount: A:0.14, C:0.24, G:0.18, T:0.44
Consensus pattern (18 bp):
TCGCATTGCGATTTCATT
Found at i:100567 original size:14 final size:14
Alignment explanation
Indices: 100548--100584 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
100538 CATCAATTAC
100548 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
100562 ACAAATCATCTTTT
1 ACAAATCAACTTTT
100576 ACAAATCAA
1 ACAAATCAA
100585 TTAAACAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:102009 original size:21 final size:21
Alignment explanation
Indices: 101979--102041 Score: 65
Period size: 21 Copynumber: 3.0 Consensus size: 21
101969 GTGAATCGGG
101979 CTCTTGAATGGTGGGAGGGAC
1 CTCTTGAATGGTGGGAGGGAC
* * **
102000 CTCTTCAATGATGACAGTGG-C
1 CTCTTGAATGGTGGGAG-GGAC
*
102021 CTCTTGAACGGTGGGAGGGAC
1 CTCTTGAATGGTGGGAGGGAC
102042 TCTCGAGGAA
Statistics
Matches: 31, Mismatches: 9, Indels: 4
0.70 0.20 0.09
Matches are distributed among these distances:
20 2 0.06
21 27 0.87
22 2 0.06
ACGTcount: A:0.21, C:0.19, G:0.37, T:0.24
Consensus pattern (21 bp):
CTCTTGAATGGTGGGAGGGAC
Found at i:102606 original size:14 final size:14
Alignment explanation
Indices: 102587--102643 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
102577 CGCGAAATGA
*
102587 AATCGCAACGACAG
1 AATCGCAACGAAAG
102601 AATCGCAATGCGAAATG
1 AATCGCAA--CGAAA-G
102618 AAAATCGCAACGAAAG
1 --AATCGCAACGAAAG
102634 AATCGCAACG
1 AATCGCAACG
102644 CGAAATGAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
14 18 0.49
16 5 0.14
17 6 0.16
19 8 0.22
ACGTcount: A:0.46, C:0.23, G:0.21, T:0.11
Consensus pattern (14 bp):
AATCGCAACGAAAG
Found at i:102628 original size:33 final size:33
Alignment explanation
Indices: 102496--102660 Score: 161
Period size: 33 Copynumber: 4.8 Consensus size: 33
102486 TAGTTTACTT
* * *
102496 TCGCAACACGAACTTAAAATCGCAACGCGAAATGATAA
1 TCGCAACGCGAAATGAAAATCGCAA--CGAAA-G--AA
* ** *
102534 TCGCAACGAGAAACCAAAATCGCAACGCGAAACCAAA
1 TCGCAACGCGAAATGAAAATCGCAA--CGAAA--GAA
*
102571 TCGCAACGCGAAATG-AAATCGCAACGACAGAA
1 TCGCAACGCGAAATGAAAATCGCAACGAAAGAA
*
102603 TCGCAATGCGAAATGAAAATCGCAACGAAAGAA
1 TCGCAACGCGAAATGAAAATCGCAACGAAAGAA
102636 TCGCAACGCGAAATGAAAATCGCAA
1 TCGCAACGCGAAATGAAAATCGCAA
102661 TGCGATTTTG
Statistics
Matches: 110, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
32 16 0.15
33 40 0.36
34 4 0.04
36 9 0.08
37 14 0.13
38 27 0.25
ACGTcount: A:0.46, C:0.24, G:0.19, T:0.11
Consensus pattern (33 bp):
TCGCAACGCGAAATGAAAATCGCAACGAAAGAA
Found at i:102665 original size:19 final size:19
Alignment explanation
Indices: 102496--102665 Score: 148
Period size: 19 Copynumber: 9.6 Consensus size: 19
102486 TAGTTTACTT
* * *
102496 TCGCAACACGAACTTAAAA
1 TCGCAACGCGAAATGAAAA
*
102515 TCGCAACGCGAAATGATAA
1 TCGCAACGCGAAATGAAAA
* **
102534 TCGCAACGAGAAACCAAAA
1 TCGCAACGCGAAATGAAAA
**
102553 TCGCAACGCGAAA-CCAAA
1 TCGCAACGCGAAATGAAAA
102571 TCGCAACGCGAAATG-AAA
1 TCGCAACGCGAAATGAAAA
*
102589 TCGCAA--CGACA-G--AA
1 TCGCAACGCGAAATGAAAA
*
102603 TCGCAATGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
102622 TCGCAA--CGAAA-G--AA
1 TCGCAACGCGAAATGAAAA
102636 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
102655 TCGCAATGCGA
1 TCGCAACGCGA
102666 TTTTGGTTTC
Statistics
Matches: 126, Mismatches: 14, Indels: 22
0.78 0.09 0.14
Matches are distributed among these distances:
14 16 0.13
15 1 0.01
16 14 0.11
17 7 0.06
18 26 0.21
19 62 0.49
ACGTcount: A:0.45, C:0.24, G:0.19, T:0.11
Consensus pattern (19 bp):
TCGCAACGCGAAATGAAAA
Found at i:102683 original size:19 final size:19
Alignment explanation
Indices: 102661--102789 Score: 125
Period size: 19 Copynumber: 7.3 Consensus size: 19
102651 AAAATCGCAA
102661 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
102680 TGCGATCTT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
102694 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
102713 TGCGATTCT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
**
102727 TGCGATTTTCATTTCGCGT
1 TGCGATTTTGGTTTCGCGT
102746 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
* *
102765 TGCGATTTTAAGTTTCGTGT
1 TGCGATTTT-GGTTTCGCGT
102785 TGCGA
1 TGCGA
102790 AAGTAAACTA
Statistics
Matches: 90, Mismatches: 9, Indels: 21
0.75 0.08 0.17
Matches are distributed among these distances:
14 22 0.24
15 1 0.01
16 2 0.02
17 2 0.02
18 2 0.02
19 48 0.53
20 13 0.14
ACGTcount: A:0.09, C:0.17, G:0.29, T:0.46
Consensus pattern (19 bp):
TGCGATTTTGGTTTCGCGT
Found at i:102703 original size:33 final size:33
Alignment explanation
Indices: 102661--102752 Score: 150
Period size: 33 Copynumber: 2.8 Consensus size: 33
102651 AAAATCGCAA
102661 TGCGATTTTGGTTTCGCGTTGCGA-TCTTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTC-TGTCGT
102694 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
**
102727 TGCGATTTTCATTTCGCGTTGCGATT
1 TGCGATTTTGGTTTCGCGTTGCGATT
102753 TTGGTTTCGC
Statistics
Matches: 56, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
33 54 0.96
34 2 0.04
ACGTcount: A:0.08, C:0.18, G:0.28, T:0.46
Consensus pattern (33 bp):
TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
Found at i:102953 original size:93 final size:93
Alignment explanation
Indices: 102837--103397 Score: 1090
Period size: 93 Copynumber: 6.1 Consensus size: 93
102827 ATGGATTGCA
102837 TTAC-TTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
102901 TAGCAGAATTGGCAGCAACCGAACAAAT
66 TAGCAGAATTGGCAGCAACCGAACAAAT
102929 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
102994 TAGCAGAATTGGCAGCAACCGAACAAAT
66 TAGCAGAATTGGCAGCAACCGAACAAAT
*
103022 TTACTTTCAACCAAAAGACAAAACAAAGACAAATATTATTTCACAGTGTTAAAGAATACACAGTT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
103087 TAGCAGAATTGGCAGCAACCGAACAAAT
66 TAGCAGAATTGGCAGCAACCGAACAAAT
103115 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
103180 TAGCAGAATTGGCAGCAACCGAACAAAT
66 TAGCAGAATTGGCAGCAACCGAACAAAT
103208 TTACTTTCAACC-AAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
103272 TAGCAGAATTGGCAGCAACCGAACAAAT
66 TAGCAGAATTGGCAGCAACCGAACAAAT
103300 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
*
103365 TAGCAGAATTGGCAGCAACCGAATAAAT
66 TAGCAGAATTGGCAGCAACCGAACAAAT
103393 TTACT
1 TTACT
103398 AAGCAATCTA
Statistics
Matches: 464, Mismatches: 3, Indels: 3
0.99 0.01 0.01
Matches are distributed among these distances:
92 96 0.21
93 368 0.79
ACGTcount: A:0.46, C:0.19, G:0.13, T:0.22
Consensus pattern (93 bp):
TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
TAGCAGAATTGGCAGCAACCGAACAAAT
Found at i:105117 original size:20 final size:19
Alignment explanation
Indices: 105086--105181 Score: 87
Period size: 20 Copynumber: 5.2 Consensus size: 19
105076 TTTTGGTTGA
105086 AATGAAAATCGCAACGAGAG
1 AATG-AAATCGCAACGAGAG
**
105106 AATGACTGTCGCAACGAGAG
1 AATGA-AATCGCAACGAGAG
105126 AAATGAAATCGCAAC--GAG
1 -AATGAAATCGCAACGAGAG
*
105144 -A-G-AATCGCAACGCGA-
1 AATGAAATCGCAACGAGAG
105159 AATGAAAATCGCAACGAGAG
1 AATG-AAATCGCAACGAGAG
105179 AAT
1 AAT
105182 CGCAACGCGA
Statistics
Matches: 62, Mismatches: 5, Indels: 18
0.73 0.06 0.21
Matches are distributed among these distances:
14 9 0.15
15 1 0.02
16 4 0.06
17 1 0.02
18 3 0.05
19 13 0.21
20 26 0.42
21 5 0.08
ACGTcount: A:0.46, C:0.18, G:0.25, T:0.11
Consensus pattern (19 bp):
AATGAAATCGCAACGAGAG
Found at i:105151 original size:14 final size:14
Alignment explanation
Indices: 105132--105188 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
105122 AGAGAAATGA
105132 AATCGCAACGAGAG
1 AATCGCAACGAGAG
*
105146 AATCGCAACGCGAAATGAA
1 AATCGCAA--CG--A-GAG
105165 AATCGCAACGAGAG
1 AATCGCAACGAGAG
105179 AATCGCAACG
1 AATCGCAACG
105189 CGAAATGAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
14 20 0.56
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 10 0.28
ACGTcount: A:0.44, C:0.23, G:0.25, T:0.09
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:105172 original size:33 final size:33
Alignment explanation
Indices: 105084--105205 Score: 156
Period size: 33 Copynumber: 3.5 Consensus size: 33
105074 TCTTTTGGTT
*
105084 GAAATGAAAATCGCAACGAGAGAATGACTGTCGCAACGAGA
1 GAAATGAAAATCGCAACGAGAG-A--A---TCGCAAC--GC
105125 GAAATG-AAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
105157 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
105190 GAAATGAAAATCGCAA
1 GAAATGAAAATCGCAA
105206 TGCGATTTTG
Statistics
Matches: 79, Mismatches: 1, Indels: 10
0.88 0.01 0.11
Matches are distributed among these distances:
32 7 0.09
33 42 0.53
34 7 0.09
37 1 0.01
39 1 0.01
40 15 0.19
41 6 0.08
ACGTcount: A:0.46, C:0.19, G:0.25, T:0.11
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAACGC
Found at i:105241 original size:14 final size:14
Alignment explanation
Indices: 105222--105278 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
105212 TTTGGTTTCG
105222 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
105236 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
105255 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
105269 CGTTGCGATT
1 CGTTGCGATT
105279 TTCATTTCTC
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
14 20 0.56
16 3 0.08
17 3 0.08
19 10 0.28
ACGTcount: A:0.09, C:0.25, G:0.23, T:0.44
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:105254 original size:33 final size:33
Alignment explanation
Indices: 105206--105286 Score: 144
Period size: 33 Copynumber: 2.5 Consensus size: 33
105196 AAAATCGCAA
**
105206 TGCGATTTTGGTTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
105239 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
105272 TGCGATTTTCATTTC
1 TGCGATTTTCATTTC
105287 TCTCGTTGCG
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
33 46 1.00
ACGTcount: A:0.09, C:0.22, G:0.22, T:0.47
Consensus pattern (33 bp):
TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
Found at i:105289 original size:21 final size:21
Alignment explanation
Indices: 105263--105338 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
105253 CGCGTTGCGA
105263 TTCTCTCGTTGCGATTTTCAT
1 TTCTCTCGTTGCGATTTTCAT
***
105284 TTCTCTCGTTGCGACAGTCA-
1 TTCTCTCGTTGCGATTTTCAT
105304 TTCTCTCGTTGCGATTTTCAT
1 TTCTCTCGTTGCGATTTTCAT
* *
105325 TTATCTCATTGCGA
1 TTCTCTCGTTGCGA
105339 CTCTTCTACA
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
20 17 0.37
21 29 0.63
ACGTcount: A:0.13, C:0.25, G:0.16, T:0.46
Consensus pattern (21 bp):
TTCTCTCGTTGCGATTTTCAT
Found at i:105319 original size:41 final size:41
Alignment explanation
Indices: 105262--105339 Score: 138
Period size: 41 Copynumber: 1.9 Consensus size: 41
105252 TCGCGTTGCG
* *
105262 ATTCTCTCGTTGCGATTTTCATTTCTCTCGTTGCGACAGTC
1 ATTCTCTCGTTGCGATTTTCATTTATCTCATTGCGACAGTC
105303 ATTCTCTCGTTGCGATTTTCATTTATCTCATTGCGAC
1 ATTCTCTCGTTGCGATTTTCATTTATCTCATTGCGAC
105340 TCTTCTACAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.14, C:0.26, G:0.15, T:0.45
Consensus pattern (41 bp):
ATTCTCTCGTTGCGATTTTCATTTATCTCATTGCGACAGTC
Found at i:105459 original size:33 final size:33
Alignment explanation
Indices: 105417--105487 Score: 115
Period size: 33 Copynumber: 2.2 Consensus size: 33
105407 AATACTAACT
*
105417 TGAAAATCGCAACGAGAGAATAGCAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
* *
105450 TGAAAATCGCAACGACAGAATCGTAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
105483 TGAAA
1 TGAAA
105488 TCTAAGTGAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.48, C:0.18, G:0.23, T:0.11
Consensus pattern (33 bp):
TGAAAATCGCAACGACAGAATAGCAACGCGAAA
Found at i:105891 original size:20 final size:20
Alignment explanation
Indices: 105866--106039 Score: 208
Period size: 20 Copynumber: 8.7 Consensus size: 20
105856 CTTTAAATAT
105866 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
105886 CGCGTTGCGATTTTATGTATTA
1 CGCGTTGCGA-TTTACGGA-TA
*
105908 -TCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
105927 CGCGTTGCGATATACGGATA
1 CGCGTTGCGATTTACGGATA
* * **
105947 CACATTGCGATTTACCCATA
1 CGCGTTGCGATTTACGGATA
105967 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
105987 CACGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
106007 CGCGTTGCGATTTATGTG-TT
1 CGCGTTGCGATTTACG-GATA
106027 CGCGTTGCGATTT
1 CGCGTTGCGATTT
106040 TCATATTCGC
Statistics
Matches: 130, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
19 2 0.02
20 111 0.85
21 15 0.12
22 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.26, T:0.34
Consensus pattern (20 bp):
CGCGTTGCGATTTACGGATA
Found at i:106048 original size:20 final size:19
Alignment explanation
Indices: 106007--106060 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 19
105997 TTTACGGATA
* *
106007 CGCGTTGCGATTTATGTGTT
1 CGCGTTGCGATTT-TATATT
106027 CGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTT-ATATT
*
106047 CGCGTTGTGATTTT
1 CGCGTTGCGATTTT
106061 GGAAAATCGC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
19 1 0.03
20 29 0.97
ACGTcount: A:0.11, C:0.17, G:0.26, T:0.46
Consensus pattern (19 bp):
CGCGTTGCGATTTTATATT
Found at i:106059 original size:60 final size:60
Alignment explanation
Indices: 105866--106039 Score: 240
Period size: 60 Copynumber: 2.9 Consensus size: 60
105856 CTTTAAATAT
**
105866 CGCGTTGCGATTTACGGATACGCGTTGCGATTTTATGTATTATCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATACGCGTTGCGA-TTTATGTATTCGCGTTGCGATTTACGGATA
* * * *** *
105927 CGCGTTGCGATATACGGATACACATTGCGATTTACCCATACGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
* *
105987 CACGTTGCGATTTACGGATACGCGTTGCGATTTATGTGTTCGCGTTGCGATTT
1 CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTT
106040 TCATATTCGC
Statistics
Matches: 95, Mismatches: 18, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
60 68 0.72
61 27 0.28
ACGTcount: A:0.20, C:0.20, G:0.26, T:0.34
Consensus pattern (60 bp):
CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
Found at i:106694 original size:20 final size:20
Alignment explanation
Indices: 106671--106715 Score: 67
Period size: 20 Copynumber: 2.3 Consensus size: 20
106661 TAAAGTAGTG
106671 TAAAATGTT-TTAAAATAAA
1 TAAAATGTTATTAAAATAAA
106690 -ATAAATGTTATTAAAATAAA
1 TA-AAATGTTATTAAAATAAA
106710 TAAAAT
1 TAAAAT
106716 CATATAAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
18 1 0.04
19 7 0.30
20 14 0.61
21 1 0.04
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (20 bp):
TAAAATGTTATTAAAATAAA
Found at i:106697 original size:19 final size:19
Alignment explanation
Indices: 106673--106713 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
106663 AAGTAGTGTA
106673 AAATGTT-TTAAAATAAAAT
1 AAATGTTATTAAAAT-AAAT
106692 AAATGTTATTAAAATAAAT
1 AAATGTTATTAAAATAAAT
106711 AAA
1 AAA
106714 ATCATATAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (19 bp):
AAATGTTATTAAAATAAAT
Found at i:110058 original size:16 final size:16
Alignment explanation
Indices: 110037--110070 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
110027 TTTCTCCAAG
110037 TCAATCGTAATTGACA
1 TCAATCGTAATTGACA
*
110053 TCAATCTTAATTGACA
1 TCAATCGTAATTGACA
110069 TC
1 TC
110071 CACCCCTTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (16 bp):
TCAATCGTAATTGACA
Found at i:117771 original size:2 final size:2
Alignment explanation
Indices: 117764--117795 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
117754 TTTTATTTTG
117764 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
117796 GTTTTTCATC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:118417 original size:12 final size:12
Alignment explanation
Indices: 118400--118426 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
118390 TTGCAATGTC
118400 TGGTCGTGGCGG
1 TGGTCGTGGCGG
118412 TGGTCGTGGCGG
1 TGGTCGTGGCGG
118424 TGG
1 TGG
118427 AGGCCGTGGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.00, C:0.15, G:0.59, T:0.26
Consensus pattern (12 bp):
TGGTCGTGGCGG
Found at i:118599 original size:30 final size:30
Alignment explanation
Indices: 118563--118722 Score: 221
Period size: 30 Copynumber: 5.3 Consensus size: 30
118553 TACCCCGCCT
* * **
118563 CCTCCTCAGTCGGCTCCAGCTCATCAACCA
1 CCTCCTCAGGCGGCTCCGGCTCGGCAACCA
118593 CCTCCTCAGGCGGCTCCGGCTCGGCAACCA
1 CCTCCTCAGGCGGCTCCGGCTCGGCAACCA
118623 CCTCCTCAGGCGGCTCCGGCTCGGCAACCA
1 CCTCCTCAGGCGGCTCCGGCTCGGCAACCA
* * * *
118653 CCTCTTCAGGCGGCTCCGACTCGGCAATCT
1 CCTCCTCAGGCGGCTCCGGCTCGGCAACCA
* * *
118683 CCTCCCCAGGCGGCTCCGGCTCGGCAATCT
1 CCTCCTCAGGCGGCTCCGGCTCGGCAACCA
118713 CCTCCTCAGG
1 CCTCCTCAGG
118723 AGGTTCCTGC
Statistics
Matches: 118, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 118 1.00
ACGTcount: A:0.14, C:0.46, G:0.23, T:0.17
Consensus pattern (30 bp):
CCTCCTCAGGCGGCTCCGGCTCGGCAACCA
Found at i:130214 original size:3 final size:3
Alignment explanation
Indices: 130206--130230 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
130196 ATCATGTTAT
130206 TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T
130231 GTAGTCAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:130288 original size:3 final size:3
Alignment explanation
Indices: 130280--130304 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
130270 ATATGACTAC
130280 ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
130305 ATATATTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:130334 original size:14 final size:13
Alignment explanation
Indices: 130280--130340 Score: 50
Period size: 15 Copynumber: 4.3 Consensus size: 13
130270 ATATGACTAC
*
130280 ATAATAATAATAAT
1 ATAAAAATAA-AAT
*
130294 AATAATAATAAATAT
1 -ATAAAAATAAA-AT
130309 ATTAAAAATAAACAT
1 A-TAAAAATAAA-AT
*
130324 ATAAAATTAAAAT
1 ATAAAAATAAAAT
130337 ATAA
1 ATAA
130341 CTAAATGGTG
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
13 6 0.15
14 11 0.27
15 24 0.59
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (13 bp):
ATAAAAATAAAAT
Found at i:132196 original size:101 final size:105
Alignment explanation
Indices: 132023--132280 Score: 339
Period size: 101 Copynumber: 2.5 Consensus size: 105
132013 AACTTCCTCT
* *
132023 TCCTT-TTCAGATGAGTTCTTCTCATTATGAACTCTTTCTGGAAATGTTGATGCTGATATATCTC
1 TCCTTCTTCAGATGAGTTCTTCTCATTATGAACAC-TTCTGGAAATGTTGATGATGATATATCTC
* * * *
132087 TTTCTGTGATAGAATC-ACGCAAAATGTTGAACAAGTTC-T-
65 CTTATGTGATAGAATCGA-GCAAAAGGTTAAACAAGTTCTTC
* * *
132126 T-C-TCTTCAGATGAATTATTCTCATTATGAACACTTCTGGAAATGTTGATGATGATCTATCTCC
1 TCCTTCTTCAGATGAGTTCTTCTCATTATGAACACTTCTGGAAATGTTGATGATGATATATCTCC
**
132189 TTATGTGATAGCGTCGAGCAAAAGGTTAAACAAGTTCTTC
66 TTATGTGATAGAATCGAGCAAAAGGTTAAACAAGTTCTTC
*
132229 TCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCCTTCTGGAAATGTTGAT
1 TCCTTCTTCAGATGAGTTCTTCTCATTATGAAC-ACTTCTGGAAATGTTGAT
132281 CTTCAAAAGA
Statistics
Matches: 134, Mismatches: 14, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
101 58 0.43
102 29 0.22
103 2 0.01
104 1 0.01
105 27 0.20
106 17 0.13
ACGTcount: A:0.26, C:0.18, G:0.17, T:0.39
Consensus pattern (105 bp):
TCCTTCTTCAGATGAGTTCTTCTCATTATGAACACTTCTGGAAATGTTGATGATGATATATCTCC
TTATGTGATAGAATCGAGCAAAAGGTTAAACAAGTTCTTC
Found at i:132549 original size:41 final size:40
Alignment explanation
Indices: 132462--132562 Score: 150
Period size: 41 Copynumber: 2.5 Consensus size: 40
132452 AAGGCTGAAC
* * *
132462 AAGTTCTTCTCATTATGAAC-TTCTTTTTCCTCTTCAGAT
1 AAGTTCTTCTCATTATGAACTTTCTTCTCCCTCTTCAAAT
132501 AAGTTCTTCTCATTATGAACTTTCTTCTCCCTTCTTCAAAT
1 AAGTTCTTCTCATTATGAACTTTCTTCTCCC-TCTTCAAAT
*
132542 GAGTTCTTCTCATTATGAACT
1 AAGTTCTTCTCATTATGAACT
132563 CTATCTGGCA
Statistics
Matches: 56, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
39 20 0.36
40 8 0.14
41 28 0.50
ACGTcount: A:0.22, C:0.24, G:0.08, T:0.47
Consensus pattern (40 bp):
AAGTTCTTCTCATTATGAACTTTCTTCTCCCTCTTCAAAT
Found at i:132661 original size:113 final size:113
Alignment explanation
Indices: 132504--132823 Score: 523
Period size: 113 Copynumber: 2.8 Consensus size: 113
132494 TTCAGATAAG
* * * *
132504 TTCTTCTCATTATGAACTTTCTTCTCCCTTCTTCAAATGAGTTCTTCTCATTATGAACTCTATCT
1 TTCTTCTCATTATGAAC-TTCCTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCT
* *
132569 GGCAATGCTGATCCATCAAGTGATAAATTCGAGCGAAAGGTTGAACAAA
65 GGCAATGTTGATCCATCAAGTGATGAATTCGAGCGAAAGGTTGAACAAA
*
132618 TTCTTCTCATTTTGAACTTCCTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTG
1 TTCTTCTCATTATGAACTTCCTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTG
* *
132683 GCAATGTTGATCCCTCAAGTGATGAATTCGAGCGAAAGGTTGAACAAG
66 GCAATGTTGATCCATCAAGTGATGAATTCGAGCGAAAGGTTGAACAAA
* * *
132731 TTCTTCTCATTATGAACTTTCTCTTCCTTTTTCAGATGAGTTCTTCTCATTATGAGCTCTACCTG
1 TTCTTCTCATTATGAACTTCCTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTG
132796 GCAATGTTGATCCATCAAGTGATGAATT
66 GCAATGTTGATCCATCAAGTGATGAATT
132824 TGAATATTTG
Statistics
Matches: 192, Mismatches: 14, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
113 176 0.92
114 16 0.08
ACGTcount: A:0.25, C:0.22, G:0.15, T:0.38
Consensus pattern (113 bp):
TTCTTCTCATTATGAACTTCCTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTG
GCAATGTTGATCCATCAAGTGATGAATTCGAGCGAAAGGTTGAACAAA
Found at i:142504 original size:14 final size:13
Alignment explanation
Indices: 142453--142514 Score: 52
Period size: 15 Copynumber: 4.3 Consensus size: 13
142443 ATATGACTAC
*
142453 ATAATAATAATAAT
1 ATAAAAATAA-AAT
*
142467 AATAATAATTAAATAT
1 -ATAA-AAATAAA-AT
142483 ATTAAAAATAAACAT
1 A-TAAAAATAAA-AT
142498 ATAAAAATAAAAT
1 ATAAAAATAAAAT
142511 ATAA
1 ATAA
142515 CTAAATGGTG
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
13 6 0.15
14 10 0.25
15 15 0.38
16 9 0.22
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.31
Consensus pattern (13 bp):
ATAAAAATAAAAT
Found at i:142520 original size:15 final size:14
Alignment explanation
Indices: 142485--142514 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
142475 TTAAATATAT
142485 TAAAAATAAACATA
1 TAAAAATAAACATA
142499 TAAAAATAAA-ATA
1 TAAAAATAAACATA
142512 TAA
1 TAA
142515 CTAAATGGTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.38
14 10 0.62
ACGTcount: A:0.73, C:0.03, G:0.00, T:0.23
Consensus pattern (14 bp):
TAAAAATAAACATA
Found at i:147123 original size:48 final size:48
Alignment explanation
Indices: 147052--147146 Score: 172
Period size: 48 Copynumber: 2.0 Consensus size: 48
147042 AAAATAATGG
*
147052 CACTCTTTGAATCAGAAAGTGTTGCCTATGGTGGCATCAACACAGCAA
1 CACTCTTTGAATCAGAAAGTGTTGCCTATGGTGGCACCAACACAGCAA
*
147100 CACTCTTTGAATCAGAAAGTGTTGTCTATGGTGGCACCAACACAGCA
1 CACTCTTTGAATCAGAAAGTGTTGCCTATGGTGGCACCAACACAGCA
147147 GCACCGGCAC
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 45 1.00
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.25
Consensus pattern (48 bp):
CACTCTTTGAATCAGAAAGTGTTGCCTATGGTGGCACCAACACAGCAA
Found at i:149219 original size:20 final size:19
Alignment explanation
Indices: 149195--149240 Score: 65
Period size: 20 Copynumber: 2.4 Consensus size: 19
149185 ATTACTTAAA
* *
149195 TTTAATTTTTTTAAATAAT
1 TTTAAATTTTTCAAATAAT
149214 TATTAAATTTTTCAAATAAT
1 T-TTAAATTTTTCAAATAAT
149234 TTTAAAT
1 TTTAAAT
149241 GATAATTGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 7 0.29
20 17 0.71
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (19 bp):
TTTAAATTTTTCAAATAAT
Found at i:149237 original size:30 final size:30
Alignment explanation
Indices: 149203--149288 Score: 84
Period size: 31 Copynumber: 2.8 Consensus size: 30
149193 AATTTAATTT
149203 TTTTAAATAATTATTAAATTT-TTCAAATAA
1 TTTTAAATAATTATTAAATTTATTCAAAT-A
* * * * *
149233 TTTTAAATGATAATTGAATTTTATTGAACTA
1 TTTTAAATAATTATT-AAATTTATTCAAATA
*
149264 TTATGAAATAATTATTAAATTTATT
1 TT-TTAAATAATTATTAAATTTATT
149289 ATAATAATCT
Statistics
Matches: 44, Mismatches: 9, Indels: 5
0.76 0.16 0.09
Matches are distributed among these distances:
30 13 0.30
31 16 0.36
32 15 0.34
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.50
Consensus pattern (30 bp):
TTTTAAATAATTATTAAATTTATTCAAATA
Found at i:149400 original size:23 final size:22
Alignment explanation
Indices: 149368--149430 Score: 74
Period size: 23 Copynumber: 2.8 Consensus size: 22
149358 AATTTTTAAA
149368 TTTTAATAATTTTAA-AAATATT
1 TTTTAATAA-TTTAATAAATATT
149390 TTTTACATAATTTAATAAATATT
1 TTTTA-ATAATTTAATAAATATT
* *
149413 ATATAATTAATTTAATAA
1 TTTTAA-TAATTTAATAA
149431 TAAAATAGAT
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
22 11 0.31
23 25 0.69
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.51
Consensus pattern (22 bp):
TTTTAATAATTTAATAAATATT
Done.