genome.fa.s5965.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005965.1 Hibiscus syriacus cultivar Beakdansim tig00014014_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56130

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4035--4083	24	2.0	24	100	0	98	48	4	26	20	1.67
4569--4834	20	13.3	20	76	13	201	41	22	15	19	1.89
4569--4834	40	6.6	41	79	10	232	41	22	15	19	1.89
6944--7009	22	3.0	22	68	26	59	22	43	6	27	1.76
7573--7663	21	4.3	21	77	4	67	21	39	21	16	1.92
7570--7663	42	2.2	42	83	3	109	21	39	22	17	1.92
8991--9166	66	2.6	65	89	8	257	27	2	15	53	1.54
11970--12023	24	2.2	24	90	0	81	42	16	16	24	1.88
12149--12182	12	2.8	12	90	0	50	14	0	29	55	1.40
13007--13179	40	4.3	40	79	10	174	21	15	25	36	1.93
12967--13114	20	7.4	19	80	11	127	22	15	23	37	1.93
13121--13175	20	2.8	20	78	10	76	27	14	29	29	1.95
15515--15542	2	14.0	2	100	0	56	50	0	50	0	1.00
16630--16678	19	2.6	19	93	0	80	36	26	18	18	1.94
16630--16685	19	2.9	19	89	0	58	35	28	17	17	1.93
16777--16869	21	4.6	20	79	4	105	39	18	23	18	1.92
16774--16869	41	2.3	41	96	0	174	40	17	22	18	1.91
16855--16905	20	2.5	20	77	3	57	45	19	15	19	1.86
16903--16947	20	2.2	20	88	0	63	33	26	13	26	1.93
17519--17650	19	7.1	19	78	11	139	13	23	18	44	1.85
17562--17625	34	1.9	34	87	3	94	14	25	18	42	1.88
17604--17650	20	2.3	20	75	13	51	14	25	12	46	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19652--19774	42	2.9	42	80	2	122	22	36	17	22	1.95
19708--19774	21	3.2	21	66	6	55	23	35	20	19	1.95
21131--21166	14	2.6	14	95	0	63	30	0	25	44	1.54
21345--21442	19	5.7	19	69	22	90	12	24	19	43	1.85
21349--21442	33	2.8	33	98	0	179	12	24	19	43	1.85
23736--23760	12	2.1	12	100	0	50	0	28	0	72	0.86
23935--23993	24	2.5	24	88	0	82	35	16	16	30	1.92
23951--24002	24	2.2	24	82	0	59	36	19	17	26	1.94
25238--25274	14	2.6	14	86	0	56	48	21	0	29	1.50
25641--25697	20	2.8	20	84	10	80	40	17	21	21	1.92
25720--25793	19	4.5	16	83	16	66	13	20	18	47	1.82
25716--25783	19	3.8	19	87	12	101	13	22	17	47	1.82
25881--25917	14	2.6	14	86	0	56	48	21	0	29	1.50
27839--27929	14	5.9	14	74	20	83	48	25	17	8	1.76
27765--27915	19	8.4	19	74	16	117	43	24	19	12	1.86
27823--27934	33	3.4	33	97	1	208	47	24	18	9	1.79
27823--27945	65	1.9	66	91	5	205	47	25	17	9	1.78
27941--28036	19	5.6	17	72	21	78	11	19	22	45	1.82
27963--28020	14	3.9	14	79	16	71	8	17	25	48	1.75
27946--28036	32	2.8	33	94	3	166	10	18	23	47	1.80
28021--28075	20	2.8	19	83	8	65	16	23	23	36	1.94
28548--28592	18	2.5	18	85	0	63	15	15	42	26	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30211--30254	22	2.0	22	95	0	79	18	15	45	20	1.85
30442--30494	20	2.7	20	93	0	88	24	18	28	28	1.98
30422--30537	20	5.7	20	76	7	81	23	17	23	36	1.95
30526--30621	41	2.3	41	92	0	165	18	22	16	41	1.90
30526--30618	21	4.6	20	77	4	96	18	23	17	40	1.90
31230--31282	20	2.6	21	76	11	56	64	5	3	26	1.33
32653--32704	3	18.0	3	84	7	63	71	0	0	28	0.87
32653--32705	22	2.5	21	87	9	72	71	0	0	28	0.86
32660--32718	25	2.3	26	83	13	79	74	1	0	23	0.91
33823--33982	80	2.0	79	90	1	248	24	5	24	45	1.74
36232--36266	18	1.9	18	88	0	52	28	14	20	37	1.91
40768--40834	34	2.0	34	93	0	116	29	16	20	32	1.95
53950--53995	18	2.6	18	78	0	56	36	13	23	26	1.91

Tables:   1

The End!