Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01005966.1 Hibiscus syriacus cultivar Beakdansim tig00014015_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 43346
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.35
Found at i:297 original size:36 final size:36
Alignment explanation
Indices: 257--333 Score: 136
Period size: 36 Copynumber: 2.1 Consensus size: 36
247 GACTCTTTAT
257 TATTTAAATTTTATTATTAATAAAAATATAAAAAAA
1 TATTTAAATTTTATTATTAATAAAAATATAAAAAAA
* *
293 TATTTAAATTTTATTATTGATAAAAATATTAAAAAA
1 TATTTAAATTTTATTATTAATAAAAATATAAAAAAA
329 TATTT
1 TATTT
334 TTAAAACCTC
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.53, C:0.00, G:0.01, T:0.45
Consensus pattern (36 bp):
TATTTAAATTTTATTATTAATAAAAATATAAAAAAA
Found at i:2465 original size:2 final size:2
Alignment explanation
Indices: 2458--2517 Score: 106
Period size: 2 Copynumber: 31.0 Consensus size: 2
2448 ATCATAATTC
2458 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2499 AT -T AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT
2518 CATTTGGTAA
Statistics
Matches: 56, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
1 2 0.04
2 54 0.96
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2858 original size:39 final size:39
Alignment explanation
Indices: 2815--2891 Score: 111
Period size: 39 Copynumber: 2.0 Consensus size: 39
2805 TATTGGTAAT
* *
2815 ATGTTCTTTTATTCTATGCAG-AGGATAATTCCTTATCAC
1 ATGTTCTTTTATTATATGC-GTAAGATAATTCCTTATCAC
*
2854 ATGTTCTTTTATTATATGCGTAAGATGATTCCTTATCA
1 ATGTTCTTTTATTATATGCGTAAGATAATTCCTTATCA
2892 TGCATATGTG
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
38 1 0.03
39 33 0.97
ACGTcount: A:0.26, C:0.16, G:0.13, T:0.45
Consensus pattern (39 bp):
ATGTTCTTTTATTATATGCGTAAGATAATTCCTTATCAC
Found at i:3234 original size:21 final size:19
Alignment explanation
Indices: 3204--3242 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 19
3194 TATTTCCAAT
3204 ATTTTTTATGATGCTTTTTA
1 ATTTTTTATG-TGCTTTTTA
*
3224 ATTTTTGTATGTTCTTTTT
1 ATTTTT-TATGTGCTTTTT
3243 TTTTCACTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.15, C:0.05, G:0.10, T:0.69
Consensus pattern (19 bp):
ATTTTTTATGTGCTTTTTA
Found at i:5546 original size:19 final size:18
Alignment explanation
Indices: 5522--5560 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 18
5512 AGTTACGATG
5522 GATGAAATTATGAGAATTT
1 GATGAAATTATGAG-ATTT
*
5541 GATGAAATTGTGAGATTT
1 GATGAAATTATGAGATTT
5559 GA
1 GA
5561 ATTTATAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 6 0.32
19 13 0.68
ACGTcount: A:0.38, C:0.00, G:0.26, T:0.36
Consensus pattern (18 bp):
GATGAAATTATGAGATTT
Found at i:5698 original size:13 final size:13
Alignment explanation
Indices: 5654--5698 Score: 56
Period size: 13 Copynumber: 3.4 Consensus size: 13
5644 CACTTTTTAT
5654 ATTAATTATAATC
1 ATTAATTATAATC
*
5667 CTTATATTATAAATC
1 ATTA-ATTAT-AATC
5682 -TTAATTATAATC
1 ATTAATTATAATC
5694 ATTAA
1 ATTAA
5699 ATTAATTTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
12 4 0.14
13 12 0.43
14 8 0.29
15 4 0.14
ACGTcount: A:0.44, C:0.09, G:0.00, T:0.47
Consensus pattern (13 bp):
ATTAATTATAATC
Found at i:6248 original size:86 final size:86
Alignment explanation
Indices: 6103--6264 Score: 272
Period size: 86 Copynumber: 1.9 Consensus size: 86
6093 TATGTTATAT
* *
6103 TATTTAACCGGAAATATTATTAAGTACAATAACATATTAGGTAACGCTTATATAATGTAATAAAT
1 TATTTAACCGGAAATATTATCAAGTACAATAACATATTAGGTAACACTTATATAATGTAATAAAT
6168 AGCACTTATATAATAAAATAG
66 AGCACTTATATAATAAAATAG
**
6189 TATTTAACCGGAAATATTATCAAGTACAATAACATATTAGGTAGA-ACTTATATAATGTAATAGG
1 TATTTAACCGGAAATATTATCAAGTACAATAACATATTAGGTA-ACACTTATATAATGTAATAAA
6253 TAGCACTTATAT
65 TAGCACTTATAT
6265 TGTCCTATTT
Statistics
Matches: 71, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
86 70 0.99
87 1 0.01
ACGTcount: A:0.44, C:0.10, G:0.12, T:0.34
Consensus pattern (86 bp):
TATTTAACCGGAAATATTATCAAGTACAATAACATATTAGGTAACACTTATATAATGTAATAAAT
AGCACTTATATAATAAAATAG
Found at i:8916 original size:181 final size:179
Alignment explanation
Indices: 8593--9056 Score: 699
Period size: 182 Copynumber: 2.6 Consensus size: 179
8583 CGTACTTACG
* *
8593 AAAGTATCGACA-TTTCAATATATCC-GTAGCGTTTTACCGGTTTTATCA-TTTGATACTGGTTT
1 AAAGTATCGACACTTTCAATATATCCGGTAGCGTTTTATCGGTTTTATCATTTTGATACCGGTTT
* * *
8655 TATCAT-TTTTACCTGTTATATCGTTGT-GATCAATA-TTTTTTTTTAAGTATCGACACTTTAGG
66 TATCATATTTTACCTGTTATATCGTTGTGGATCGATACATTTTTTTAAAGTATCGACACTTTAGG
*
8717 CGCTAAAACTGATTCTCTTTTAAATTCACAAAGTGTCGATCCTTATA-T
131 CGCTAAAACTGATTCTCTTTTAAATTAACAAAGTGTCGATCCTTATATT
*
8765 AAAGTATCGACACTTTCAATATATCCGGTAGCGTTTTATCGGTTTCATCATTTTGATACCGGTTT
1 AAAGTATCGACACTTTCAATATATCCGGTAGCGTTTTATCGGTTTTATCATTTTGATACCGGTTT
8830 TATCATATTTTCACCTGTTATATCGTTGTGGATCGATACATTTTTTTAAAGTATCGACACGTTAT
66 TATCATATTTT-ACCTGTTATATCGTTGTGGATCGATACATTTTTTTAAAGTATCGACAC-TT-T
*
8895 AGGCGCTAAAACTGCTTCTCTTTTAAATTAACAAAGTGTCGATCCTTATATT
128 AGGCGCTAAAACTGATTCTCTTTTAAATTAACAAAGTGTCGATCCTTATATT
* * * * ** *
8947 AAAGTACCGACACTTTAAATATATCCGGTACCGTTTTATCGATTTTATCATTTCAATACCGATTT
1 AAAGTATCGACACTTTCAATATATCCGGTAGCGTTTTATCGGTTTTATCATTTTGATACCGGTTT
*
9012 TGTCATAGTTTTACCTGTTATATCGTTGTGGATCGATACATTTTT
66 TATCATA-TTTTACCTGTTATATCGTTGTGGATCGATACATTTTT
9057 AATTTGGATC
Statistics
Matches: 264, Mismatches: 17, Indels: 12
0.90 0.06 0.04
Matches are distributed among these distances:
172 12 0.05
173 13 0.05
174 21 0.08
175 19 0.07
176 4 0.02
177 17 0.06
178 7 0.03
179 19 0.07
180 2 0.01
181 49 0.19
182 97 0.37
183 4 0.02
ACGTcount: A:0.27, C:0.17, G:0.14, T:0.42
Consensus pattern (179 bp):
AAAGTATCGACACTTTCAATATATCCGGTAGCGTTTTATCGGTTTTATCATTTTGATACCGGTTT
TATCATATTTTACCTGTTATATCGTTGTGGATCGATACATTTTTTTAAAGTATCGACACTTTAGG
CGCTAAAACTGATTCTCTTTTAAATTAACAAAGTGTCGATCCTTATATT
Found at i:12322 original size:20 final size:20
Alignment explanation
Indices: 12299--12343 Score: 58
Period size: 18 Copynumber: 2.4 Consensus size: 20
12289 TTTCTTTACT
* *
12299 TTATATTATATATTTTTATA
1 TTATATTATATATATATATA
12319 -T-TATTATATATATATATA
1 TTATATTATATATATATATA
12337 TTATATT
1 TTATATT
12344 TTTTATCTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
18 15 0.71
19 2 0.10
20 4 0.19
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (20 bp):
TTATATTATATATATATATA
Found at i:12325 original size:18 final size:18
Alignment explanation
Indices: 12302--12340 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
12292 CTTTACTTTA
* *
12302 TATTATATATTTTTATAT
1 TATTATATATATATATAT
12320 TATTATATATATATATAT
1 TATTATATATATATATAT
12338 TAT
1 TAT
12341 ATTTTTTATC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (18 bp):
TATTATATATATATATAT
Found at i:12505 original size:22 final size:22
Alignment explanation
Indices: 12480--12521 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
12470 ATTTATTTTC
*
12480 ATTTATTA-TTATTATTATTACT
1 ATTTAGTATTTATT-TTATTACT
12502 ATTTAGTATTTATTTTATTA
1 ATTTAGTATTTATTTTATTA
12522 TACATACATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 13 0.72
23 5 0.28
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.64
Consensus pattern (22 bp):
ATTTAGTATTTATTTTATTACT
Found at i:12541 original size:23 final size:24
Alignment explanation
Indices: 12511--12571 Score: 72
Period size: 23 Copynumber: 2.6 Consensus size: 24
12501 TATTTAGTAT
12511 TTATTTTATTATACATACATTTTA
1 TTATTTTATTATACATACATTTTA
* **
12535 -TATTTTA-TATATATATTTTTTA
1 TTATTTTATTATACATACATTTTA
12557 TTATTTTATTTATAC
1 TTATTTTA-TTATAC
12572 TATTTATTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
22 12 0.40
23 14 0.47
25 4 0.13
ACGTcount: A:0.31, C:0.05, G:0.00, T:0.64
Consensus pattern (24 bp):
TTATTTTATTATACATACATTTTA
Found at i:12542 original size:20 final size:20
Alignment explanation
Indices: 12519--12558 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
12509 ATTTATTTTA
12519 TTATACATACATTTTATATT
1 TTATACATACATTTTATATT
* * *
12539 TTATATATATATTTTTTATT
1 TTATACATACATTTTATATT
12559 ATTTTATTTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (20 bp):
TTATACATACATTTTATATT
Found at i:12549 original size:13 final size:12
Alignment explanation
Indices: 12533--12598 Score: 54
Period size: 13 Copynumber: 5.8 Consensus size: 12
12523 ACATACATTT
12533 TATATTTTATATA
1 TATATTTTAT-TA
12546 TATATTTT-TTA
1 TATATTTTATTA
12557 T-TATTTTATT-
1 TATATTTTATTA
12567 TATACTATTTATT-
1 TATA-T-TTTATTA
*
12580 TA-ATTTCATTA
1 TATATTTTATTA
12591 TAT-TTTTA
1 TATATTTTA
12599 GTTTCTTTGC
Statistics
Matches: 45, Mismatches: 2, Indels: 14
0.74 0.03 0.23
Matches are distributed among these distances:
10 12 0.27
11 14 0.31
12 3 0.07
13 16 0.36
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.67
Consensus pattern (12 bp):
TATATTTTATTA
Found at i:12585 original size:23 final size:22
Alignment explanation
Indices: 12512--12597 Score: 70
Period size: 23 Copynumber: 3.9 Consensus size: 22
12502 ATTTAGTATT
* **
12512 TATTTTATTATACATACATTTTA
1 TATTTTA-TATATATATTTTTTA
12535 TATTTTATATATATATTTTTTA
1 TATTTTATATATATATTTTTTA
*
12557 TTATTTTATTTATACTATTTATTTA
1 -TATTTTATATATA-TATTT-TTTA
*
12582 -ATTTCAT-TATAT-TTTT
1 TATTTTATATATATATTTT
12598 AGTTTCTTTG
Statistics
Matches: 55, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
19 1 0.02
20 3 0.05
21 1 0.02
22 16 0.29
23 25 0.45
24 5 0.09
25 4 0.07
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.65
Consensus pattern (22 bp):
TATTTTATATATATATTTTTTA
Found at i:12704 original size:20 final size:19
Alignment explanation
Indices: 12677--12732 Score: 62
Period size: 19 Copynumber: 2.9 Consensus size: 19
12667 TTTTATCTTC
12677 ATTTATTTTATTTTATTCA
1 ATTTATTTTATTTTATTCA
*
12696 ATTTCATTTT-TTTTCATCCA
1 ATTT-ATTTTATTTT-ATTCA
12716 A-TTATTTTATGTTTATT
1 ATTTATTTTAT-TTTATT
12733 ATTATTGGTT
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
18 5 0.16
19 13 0.42
20 13 0.42
ACGTcount: A:0.23, C:0.09, G:0.02, T:0.66
Consensus pattern (19 bp):
ATTTATTTTATTTTATTCA
Found at i:17691 original size:22 final size:22
Alignment explanation
Indices: 17663--17717 Score: 110
Period size: 22 Copynumber: 2.5 Consensus size: 22
17653 GCTACCCCAT
17663 CAAACCTTTGAGCATCAAATGC
1 CAAACCTTTGAGCATCAAATGC
17685 CAAACCTTTGAGCATCAAATGC
1 CAAACCTTTGAGCATCAAATGC
17707 CAAACCTTTGA
1 CAAACCTTTGA
17718 CCAAACACAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.36, C:0.27, G:0.13, T:0.24
Consensus pattern (22 bp):
CAAACCTTTGAGCATCAAATGC
Found at i:18151 original size:18 final size:19
Alignment explanation
Indices: 18128--18164 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
18118 TCAACATCAA
*
18128 ATATTGGGGCATT-TTTGG
1 ATATTGGGACATTATTTGG
18146 ATATTGGGACATTATTTGG
1 ATATTGGGACATTATTTGG
18165 GGATTCAACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.22, C:0.05, G:0.30, T:0.43
Consensus pattern (19 bp):
ATATTGGGACATTATTTGG
Found at i:18495 original size:106 final size:106
Alignment explanation
Indices: 18309--19784 Score: 2511
Period size: 106 Copynumber: 13.9 Consensus size: 106
18299 GCTTTTAGAG
* *
18309 GCAAGTTCAACTTCACAACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTCAGAGCC
1 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCC
* *
18374 AATTTCAACTTCACAACGAAGGATATTGGACTCCAAACAAC
66 AATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAAC
* * ** * * *
18415 ACAAGTTCAACTTCACGACGAAGGGACCGCTGGTTATCAGTAAATAATTTCCCAATTTTAGAGCC
1 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCC
* ** *
18480 AATTTTAACTTCACAATGAAGGATATTGGACTCAAGACAAC
66 AATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAAC
* * * *
18521 GCAAGTTCAACTTCATGACGAAGGGACCGCTGTTTGTCAATAAACAACTTCCCAATTTCAAAGCC
1 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCC
18586 AATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAAC
66 AATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAAC
* * *
18627 GCAAGTTCAACTTCACGACGAAGGGACTGCTGGTTGTCAACAAACAACTTCTCAATTTAAGAGCC
1 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCC
*
18692 AATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
66 AATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAAC
18733 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCC
1 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCC
* *
18798 AATTTCAACTTCACAGGGAAGGATATTGGACTCGAGACAAC
66 AATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAAC
* *
18839 GCAAGTTCAACTTCACGATGAAGGGACTGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCC
1 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCC
* *
18904 AATTTTAACTTCACAGCGAAGAATATTGGACTCCAGACAAC
66 AATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAAC
* * *
18945 GCAAGTTCAACTTCACGACGAAGGGACCACTGGTTGTCAACAAACAGCTTCTCAATTTCAGAGCC
1 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCC
*
19010 AATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
66 AATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAAC
19051 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCC
1 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCC
*
19116 AATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAAC
66 AATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAAC
* *
19157 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCCAATTTCGGAGCC
1 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCC
* *
19222 AATTTCAACTCCACAGCGAAAGATATTGGACTCCAGACAAC
66 AATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAAC
* *
19263 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCCAATTTCGGAGCC
1 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCC
19328 AATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAAC
66 AATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAAC
*
19369 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTCAGAGCC
1 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCC
* *
19434 AATTCCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
66 AATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAAC
*
19475 GCAAGTTCAACTTCACGATGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCC
1 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCC
*
19540 AATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAAC
66 AATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAAC
19581 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCC
1 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCC
19646 AATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAAC
66 AATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAAC
*
19687 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTCAGAGCC
1 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCC
* * *
19752 AATTTCAACTTCACAACGGAGGATATTAGACTC
66 AATTTCAACTTCACAGCGAAGGATATTGGACTC
19785 GGAACAATGC
Statistics
Matches: 1288, Mismatches: 82, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
106 1288 1.00
ACGTcount: A:0.34, C:0.26, G:0.18, T:0.22
Consensus pattern (106 bp):
GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCC
AATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAAC
Found at i:20586 original size:37 final size:37
Alignment explanation
Indices: 20536--20629 Score: 136
Period size: 37 Copynumber: 2.5 Consensus size: 37
20526 TTTCGTCCTA
20536 CTAGGATTCAAACTCCTAAAAATAGGATAGAATT-TT
1 CTAGGATTCAAACTCCTAAAAATAGGATAGAATTCTT
*
20572 GCTAGGATTCAAACTCCTAAAAATAGGATAGAGTTCTT
1 -CTAGGATTCAAACTCCTAAAAATAGGATAGAATTCTT
** *
20610 CTATTATTTAAACTCCTAAA
1 CTAGGATTCAAACTCCTAAA
20630 GATATGATCC
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
37 50 0.96
38 2 0.04
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.32
Consensus pattern (37 bp):
CTAGGATTCAAACTCCTAAAAATAGGATAGAATTCTT
Found at i:21064 original size:10 final size:9
Alignment explanation
Indices: 21050--21087 Score: 51
Period size: 10 Copynumber: 4.1 Consensus size: 9
21040 TATATTTATA
21050 TATTTAATT
1 TATTTAATT
21059 TAATTTAATT
1 T-ATTTAATT
21069 TATTT-ATT
1 TATTTAATT
21077 TATTATAATT
1 TATT-TAATT
21087 T
1 T
21088 TTTTTCATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
8 7 0.27
9 6 0.23
10 13 0.50
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (9 bp):
TATTTAATT
Found at i:21069 original size:23 final size:23
Alignment explanation
Indices: 21043--21087 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
21033 ATATGTATAT
21043 ATTTATATATTTAATT-TAATTTA
1 ATTTATATATTT-ATTATAATTTA
*
21066 ATTTATTTATTTATTATAATTT
1 ATTTATATATTTATTATAATTT
21088 TTTTTCATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 3 0.15
23 17 0.85
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (23 bp):
ATTTATATATTTATTATAATTTA
Found at i:21132 original size:3 final size:3
Alignment explanation
Indices: 21126--21163 Score: 58
Period size: 3 Copynumber: 12.3 Consensus size: 3
21116 ATTATTTTCC
*
21126 TAT TAT TAT ATAT TAT TAT TAA TAT TAT TAT TAT TAT T
1 TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT T
21164 TATCTATATT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
3 29 0.91
4 3 0.09
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:21137 original size:21 final size:21
Alignment explanation
Indices: 21113--21164 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
21103 TATGTTATAT
**
21113 TATATTATTTTCCTATTATTA
1 TATATTATTTTAATATTATTA
21134 TATATTATTATTAATATTATTA
1 TATATTATT-TTAATATTATTA
21156 T-TATTATTT
1 TATATTATTT
21165 ATCTATATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
20 1 0.04
21 16 0.57
22 11 0.39
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (21 bp):
TATATTATTTTAATATTATTA
Found at i:21359 original size:24 final size:22
Alignment explanation
Indices: 21329--21384 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 22
21319 CTATTTAGTA
21329 TTTTATTATATTATACATACATT
1 TTTTATTAT-TTATACATACATT
* *
21352 TTTATATT-TTTATATATATATT
1 TTT-TATTATTTATACATACATT
21374 TTTTATTATTT
1 TTTTATTATTT
21385 TATTTATACT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
21 4 0.14
22 17 0.59
23 4 0.14
24 4 0.14
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.66
Consensus pattern (22 bp):
TTTTATTATTTATACATACATT
Found at i:21364 original size:22 final size:21
Alignment explanation
Indices: 21329--21407 Score: 59
Period size: 23 Copynumber: 3.4 Consensus size: 21
21319 CTATTTAGTA
21329 TTTTATTATATTATACATACATT
1 TTTTATT-T-TTATACATACATT
* *
21352 TTTATATTTTTATATATATATT
1 TTT-TATTTTTATACATACATT
**
21374 TTTTATTATTTTATTTATACTATT
1 TTTTA-T-TTTTATACATAC-ATT
21398 TATTTATTTT
1 T-TTTATTTT
21408 CATTATATTT
Statistics
Matches: 47, Mismatches: 4, Indels: 10
0.77 0.07 0.16
Matches are distributed among these distances:
21 2 0.04
22 15 0.32
23 17 0.36
24 9 0.19
25 4 0.09
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (21 bp):
TTTTATTTTTATACATACATT
Found at i:21380 original size:21 final size:21
Alignment explanation
Indices: 21350--21419 Score: 63
Period size: 23 Copynumber: 3.1 Consensus size: 21
21340 TATACATACA
21350 TTTTTATATTTTTATATATATAT
1 TTTTTATA-TTTTAT-TATATAT
21373 TTTTTATTATTTTATTTATACTAT
1 TTTTTA-TATTTTA-TTATA-TAT
*
21397 TTATTTAT-TTTCATTATAT-T
1 TT-TTTATATTTTATTATATAT
21417 TTT
1 TTT
21420 AGTTTCTTTG
Statistics
Matches: 42, Mismatches: 1, Indels: 12
0.76 0.02 0.22
Matches are distributed among these distances:
19 1 0.02
20 3 0.07
21 1 0.02
22 5 0.12
23 19 0.45
24 9 0.21
25 4 0.10
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (21 bp):
TTTTTATATTTTATTATATAT
Found at i:21415 original size:45 final size:44
Alignment explanation
Indices: 21329--21419 Score: 105
Period size: 45 Copynumber: 2.0 Consensus size: 44
21319 CTATTTAGTA
*
21329 TTTTATTATATTATACATACATTTTTATATTTTTATATATATATT
1 TTTTATTATATTATACATACATTTTTATATTTTCATATATAT-TT
* **
21374 TTTTATTATTTTATTTATACTATTTATT-TATTTTCAT-TATATTT
1 TTTTATTATATTATACATAC-ATTT-TTATATTTTCATATATATTT
21418 TT
1 TT
21420 AGTTTCTTTG
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
44 4 0.10
45 22 0.55
46 12 0.30
47 2 0.05
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (44 bp):
TTTTATTATATTATACATACATTTTTATATTTTCATATATATTT
Found at i:21416 original size:28 final size:27
Alignment explanation
Indices: 21360--21417 Score: 64
Period size: 28 Copynumber: 2.1 Consensus size: 27
21350 TTTTTATATT
* *
21360 TTTATATATATATTTTTTATTATTTTA
1 TTTATATATATATTTTTTATCATTATA
*
21387 TTTATACTATTTATTTATTT-TCATTATA
1 TTTATA-TATATATTT-TTTATCATTATA
21415 TTT
1 TTT
21418 TTAGTTTCTT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
27 6 0.23
28 17 0.65
29 3 0.12
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.69
Consensus pattern (27 bp):
TTTATATATATATTTTTTATCATTATA
Found at i:21533 original size:20 final size:19
Alignment explanation
Indices: 21506--21561 Score: 62
Period size: 19 Copynumber: 2.9 Consensus size: 19
21496 TTTTAACTTC
21506 ATTTATTTTATTTTATTCA
1 ATTTATTTTATTTTATTCA
*
21525 ATTTCATTTT-TTTTCATCCA
1 ATTT-ATTTTATTTT-ATTCA
21545 A-TTATTTTATGTTTATT
1 ATTTATTTTAT-TTTATT
21562 ATTATTGGTT
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
18 5 0.16
19 13 0.42
20 13 0.42
ACGTcount: A:0.23, C:0.09, G:0.02, T:0.66
Consensus pattern (19 bp):
ATTTATTTTATTTTATTCA
Found at i:22420 original size:3 final size:3
Alignment explanation
Indices: 22414--22448 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
22404 ATTATTATTA
*
22414 TTG TTG TTG TTG TTA TTG TTG TTG TTG TTG TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
22449 TTATTTATTA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.03, C:0.00, G:0.29, T:0.69
Consensus pattern (3 bp):
TTG
Found at i:23958 original size:64 final size:65
Alignment explanation
Indices: 23890--24046 Score: 198
Period size: 64 Copynumber: 2.5 Consensus size: 65
23880 TTGAAGGTGT
** * *
23890 ATCGATGCAT-TGGTAGTGCATCGATGCAGT-CTTTTAA-AATAAATACATCGAATGCAATTCGT
1 ATCGATGCATATGGTAGTGCATCGATGCA-TCCCATTAATAAGAAA-ACATCGAATGCAATTAGT
23952 GC
64 GC
*
23954 ATCGATGCATAT-GTAGTGCATCGATGCATCCCATTAATAAGGAAACATCGAATGCAATTAGTGC
1 ATCGATGCATATGGTAGTGCATCGATGCATCCCATTAATAAGAAAACATCGAATGCAATTAGTGC
* *
24018 ATCGATGCATAAGGCA-TGCATCGATGCAT
1 ATCGATGCATATGGTAGTGCATCGATGCAT
24047 AAGGCATGCA
Statistics
Matches: 82, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
63 1 0.01
64 74 0.90
65 7 0.09
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.28
Consensus pattern (65 bp):
ATCGATGCATATGGTAGTGCATCGATGCATCCCATTAATAAGAAAACATCGAATGCAATTAGTGC
Found at i:24039 original size:19 final size:19
Alignment explanation
Indices: 24015--24065 Score: 102
Period size: 19 Copynumber: 2.7 Consensus size: 19
24005 ATGCAATTAG
24015 TGCATCGATGCATAAGGCA
1 TGCATCGATGCATAAGGCA
24034 TGCATCGATGCATAAGGCA
1 TGCATCGATGCATAAGGCA
24053 TGCATCGATGCAT
1 TGCATCGATGCAT
24066 CCCAGTAATA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 32 1.00
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.24
Consensus pattern (19 bp):
TGCATCGATGCATAAGGCA
Found at i:24108 original size:83 final size:84
Alignment explanation
Indices: 23950--24130 Score: 212
Period size: 83 Copynumber: 2.2 Consensus size: 84
23940 AATGCAATTC
* * * *
23950 GTGCATCGATGCAT-ATGTAGTGCATCGATGCATCCCATTAATAAGGAAACATCGAATGCAATTA
1 GTGCATCGATGCATAAGGCAGTGCATCGATGCATCCCAGTAATAAGGAAACATCGAATACAATTA
24014 GTGCATCGATGCATAAGGCA
66 GTGCATCGATGCATAA-GCA
* *
24034 -TGCATCGATGCATAAGGCA-TGCATCGATGCATCCCAGTAATAA-TACAACATCGAATACATTT
1 GTGCATCGATGCATAAGGCAGTGCATCGATGCATCCCAGTAATAAGGA-AACATCGAATACA-AT
* *
24096 TA-TGCA-CTGATGCATCAGTA
64 TAGTGCATC-GATGCATAAGCA
24116 GTGCATCGATGCATA
1 GTGCATCGATGCATA
24131 CCTTCATTAA
Statistics
Matches: 84, Mismatches: 8, Indels: 11
0.82 0.08 0.11
Matches are distributed among these distances:
82 4 0.05
83 74 0.88
84 6 0.07
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.26
Consensus pattern (84 bp):
GTGCATCGATGCATAAGGCAGTGCATCGATGCATCCCAGTAATAAGGAAACATCGAATACAATTA
GTGCATCGATGCATAAGCA
Found at i:25146 original size:29 final size:30
Alignment explanation
Indices: 25058--25148 Score: 130
Period size: 30 Copynumber: 3.1 Consensus size: 30
25048 CCTTATAGAC
*
25058 AGTTACCGAGGATCTTTATGACCTCTGGAC
1 AGTTACCGAGGATCTTTATGACCTCTGGAT
*
25088 AGTTACCGAGGATCTGTATGACCTCTGGAT
1 AGTTACCGAGGATCTTTATGACCTCTGGAT
* * *
25118 AGTTACCG-GGGTCTTTGTGACATCTGGAT
1 AGTTACCGAGGATCTTTATGACCTCTGGAT
25147 AG
1 AG
25149 GTCCTTCGGG
Statistics
Matches: 55, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
29 19 0.35
30 36 0.65
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.31
Consensus pattern (30 bp):
AGTTACCGAGGATCTTTATGACCTCTGGAT
Found at i:41090 original size:34 final size:37
Alignment explanation
Indices: 41018--41092 Score: 93
Period size: 39 Copynumber: 2.1 Consensus size: 37
41008 ATATGAATCC
41018 TTCAGCTAGCCAAACAAAGGCAATTATAATAAAGTTGAA
1 TTCAGCTAGCCAAACAAAGGCAA-TAT-ATAAAGTTGAA
* *
41057 TTCAGCTAGCCAAGCAATGGCAA-AT-TAAA-TTGAA
1 TTCAGCTAGCCAAACAAAGGCAATATATAAAGTTGAA
41091 TT
1 TT
41093 TACTAAATAA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
34 7 0.21
35 4 0.12
37 2 0.06
39 21 0.62
ACGTcount: A:0.43, C:0.16, G:0.16, T:0.25
Consensus pattern (37 bp):
TTCAGCTAGCCAAACAAAGGCAATATATAAAGTTGAA
Found at i:42358 original size:33 final size:33
Alignment explanation
Indices: 42313--42380 Score: 109
Period size: 33 Copynumber: 2.1 Consensus size: 33
42303 GAATTAGTGC
**
42313 TGAAGCAATCAACATCGAATATTGGGGCATCTT
1 TGAAGCAATCAACATCGAATATTGCAGCATCTT
*
42346 TGAAGCATTCAACATCGAATATTGCAGCATCTT
1 TGAAGCAATCAACATCGAATATTGCAGCATCTT
42379 TG
1 TG
42381 GGGATTCAAC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.29
Consensus pattern (33 bp):
TGAAGCAATCAACATCGAATATTGCAGCATCTT
Found at i:42647 original size:64 final size:64
Alignment explanation
Indices: 42464--42649 Score: 240
Period size: 67 Copynumber: 2.9 Consensus size: 64
42454 ATTAGTATCA
* * *
42464 TTTGAG-ATGTTTCTCTTGAAACAAATTTT-T-TCTCGAGACAGTTTCTTTT-A-AGAAAAATC
1 TTTGAGTATATTTCTCTTGAAACAAATTTTGTCTCTCGAGACAATTTCTTTTGAGAAAAAAATC
* *
42523 TTTGAGTATGTTTCTCTGGAAACAAATTTTTGTCTCTCTTGAGACAATTTCTTTTGAGAAAAAAA
1 TTTGAGTATATTTCTCTTGAAACAAA-TTTTGTCTCTC--GAGACAATTTCTTTTGAGAAAAAAA
42588 TC
63 TC
*
42590 TTTGAGTTTATTTCAT-TTGAAACAAATTTTGTCTCTCGAGACAATTTCTTTTGAGAAAAA
1 TTTGAGTATATTTC-TCTTGAAACAAATTTTGTCTCTCGAGACAATTTCTTTTGAGAAAAA
42650 TCCTTGAGTC
Statistics
Matches: 112, Mismatches: 6, Indels: 13
0.85 0.05 0.10
Matches are distributed among these distances:
59 6 0.05
60 18 0.16
61 4 0.04
62 1 0.01
63 4 0.04
64 23 0.21
65 14 0.12
66 12 0.11
67 29 0.26
68 1 0.01
ACGTcount: A:0.31, C:0.13, G:0.14, T:0.42
Consensus pattern (64 bp):
TTTGAGTATATTTCTCTTGAAACAAATTTTGTCTCTCGAGACAATTTCTTTTGAGAAAAAAATC
Found at i:42700 original size:36 final size:34
Alignment explanation
Indices: 42653--42747 Score: 102
Period size: 36 Copynumber: 2.7 Consensus size: 34
42643 AGAAAAATCC
* ** *
42653 TTGAGTCTGTTTCTTTGGAAACAAAATTTACCATCT
1 TTGAGTCTGTTTCATT-GAAACAAAA-CAAACATCT
*
42689 TTGAGTCTGTTTCCCTTGAAACAAAACAAACATCT
1 TTGAGTCTGTTT-CATTGAAACAAAACAAACATCT
42724 TTGAGATC-GTTTCATTGAAACAAA
1 TTGAG-TCTGTTTCATTGAAACAAA
42748 TTTTGTCTCC
Statistics
Matches: 52, Mismatches: 5, Indels: 6
0.83 0.08 0.10
Matches are distributed among these distances:
34 11 0.21
35 15 0.29
36 23 0.44
37 3 0.06
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.36
Consensus pattern (34 bp):
TTGAGTCTGTTTCATTGAAACAAAACAAACATCT
Found at i:42803 original size:31 final size:30
Alignment explanation
Indices: 42768--42840 Score: 80
Period size: 32 Copynumber: 2.4 Consensus size: 30
42758 CTTGAGGCAG
42768 TTTCTTTGGAAACACAAA-ATCTTTGAGTC-T
1 TTTCTTT-GAAACA-AAACATCTTTGAGTCGT
42798 ATTTCTCTTGAAACAAAACCATCTTTGAGTCGT
1 -TTTCT-TTGAAACAAAA-CATCTTTGAGTCGT
42831 TTTC-TTGAAA
1 TTTCTTTGAAA
42841 TGAATTTTGT
Statistics
Matches: 38, Mismatches: 0, Indels: 9
0.81 0.00 0.19
Matches are distributed among these distances:
30 9 0.24
31 11 0.29
32 17 0.45
33 1 0.03
ACGTcount: A:0.30, C:0.18, G:0.12, T:0.40
Consensus pattern (30 bp):
TTTCTTTGAAACAAAACATCTTTGAGTCGT
Found at i:42826 original size:133 final size:129
Alignment explanation
Indices: 42600--42840 Score: 292
Period size: 137 Copynumber: 1.8 Consensus size: 129
42590 TTTGAGTTTA
* * *
42600 TTTCATTTGAAACAAATTTTGTCTCTCGAGACAATTTCTTTTGAGAAAAATCCTTGAGTCTGTTT
1 TTTCATTTGAAACAAATTTTGTCTCTCGAGACAATTTCTTTGGACAAAAATCCTTGAGTCTATTT
42665 CTTTGGAAACAAAATTTACCATCTTTGAGTCTGTTTCCCTTGAAACAAAACAAACATCTTTGAGA
66 CTTTGGAAACAAAA--TACCATCTTTGAGTC-GTTT-CCTTGAAACAAAACAAACATCTTTGAGA
42730 TCG
127 TCG
* * * *
42733 TTTCA-TTGAAACAAATTTTGTCTCCCTTGAGGCAGTTTCTTTGGAAACACAAAATCTTTGAGTC
1 TTTCATTTGAAACAAATTTTGTCT--CTCGAGACAATTTCTTTGG--ACA-AAAATCCTTGAGTC
*
42797 TATTTCTCTT-GAAAC-AAA-ACCATCTTTGAGTCGTTTTCTTGAAA
61 TATTTCT-TTGGAAACAAAATACCATCTTTGAGTCGTTTCCTTGAAA
42841 TGAATTTTGT
Statistics
Matches: 94, Mismatches: 8, Indels: 14
0.81 0.07 0.12
Matches are distributed among these distances:
131 7 0.07
132 22 0.23
133 19 0.20
134 15 0.16
136 5 0.05
137 24 0.26
138 2 0.02
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.38
Consensus pattern (129 bp):
TTTCATTTGAAACAAATTTTGTCTCTCGAGACAATTTCTTTGGACAAAAATCCTTGAGTCTATTT
CTTTGGAAACAAAATACCATCTTTGAGTCGTTTCCTTGAAACAAAACAAACATCTTTGAGATCG
Found at i:42869 original size:97 final size:99
Alignment explanation
Indices: 42685--42869 Score: 250
Period size: 97 Copynumber: 1.9 Consensus size: 99
42675 AAAATTTACC
*
42685 ATCTTTGAGTCTGTTTCCCTTGAAACAAAACAAACATCTTTGAGATCGTTTCATTGAAACAAATT
1 ATCTTTGAGTCTATTTCCCTTGAAACAAAAC--ACATCTTTGAGATCGTTTCATTGAAACAAATT
* * *
42750 TTGTCTCCCTTGAGGCAGTTTCTTTGGAAACACAAA
64 TTGTCTCCCTTAAGACAATTTCTTTGGAAACACAAA
* **
42786 ATCTTTGAGTCTATTTCTCTTGAAACAAAAC-CATCTTTGAG-TCGTTTTC-TTGAAATGAATTT
1 ATCTTTGAGTCTATTTCCCTTGAAACAAAACACATCTTTGAGATCG-TTTCATTGAAACAAATTT
*
42848 TGTCTCTCTTAAGACAATTTCT
65 TGTCTCCCTTAAGACAATTTCT
42870 CTTGAAGCAT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
97 32 0.43
98 14 0.19
101 29 0.39
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.39
Consensus pattern (99 bp):
ATCTTTGAGTCTATTTCCCTTGAAACAAAACACATCTTTGAGATCGTTTCATTGAAACAAATTTT
GTCTCCCTTAAGACAATTTCTTTGGAAACACAAA
Done.