Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005967.1 Hibiscus syriacus cultivar Beakdansim tig00014016_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63431

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8560--8611
17
3.1
17
75
5
52
65
1
0
32
1.04
13139--13233
48
2.0
48
95
0
172
30
23
21
25
1.99
14456--14480
2
12.5
2
100
0
50
48
0
0
52
1.00
15295--15332
20
1.9
19
89
5
58
47
2
0
50
1.15
15459--15503
23
2.0
22
87
12
65
44
2
0
53
1.13
15416--15524
41
2.6
41
75
18
100
50
0
0
48
1.07
27724--27768
21
2.1
21
87
0
63
31
28
24
15
1.96
28950--29046
32
3.1
32
78
14
128
28
17
18
35
1.94
28949--29076
31
4.1
31
78
9
134
26
17
21
35
1.95
29062--29134
30
2.4
30
95
0
128
24
17
24
32
1.97
32192--32236
21
2.1
21
84
8
56
33
28
22
15
1.95
32682--32725
22
2.0
22
86
4
63
40
0
27
31
1.56
33410--33537
31
4.1
31
79
9
143
26
17
21
34
1.96
33523--33595
30
2.4
30
97
0
137
24
19
24
31
1.98
35636--35730
48
2.0
48
91
0
154
27
14
20
37
1.91
36502--36567
31
2.1
32
88
2
98
39
18
15
27
1.90
36973--37130
78
2.0
78
84
4
203
44
13
8
33
1.73
40192--40238
23
2.0
24
95
4
87
29
8
29
31
1.87
41670--41707
19
2.0
19
85
10
51
65
10
10
13
1.47
46774--46809
18
2.0
18
94
0
63
55
25
2
16
1.55
47075--47179
20
5.2
20
76
0
84
21
20
22
35
1.96
47071--47179
40
2.7
40
78
0
119
22
21
22
33
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47303--47339
14
2.6
14
95
0
65
45
21
0
32
1.52
47239--47399
78
2.1
77
90
1
250
50
17
1
30
1.57
48771--48869
21
4.7
21
85
5
119
23
18
35
23
1.96
51456--51493
20
2.0
20
84
5
51
44
13
15
26
1.83
51716--51765
22
2.3
22
85
0
64
24
12
40
24
1.88
51107--51932
420
2.0
421
94
0
1438
34
11
21
31
1.89
51921--51969
20
2.5
20
83
6
66
22
8
24
44
1.79
58788--58820
11
2.8
12
90
9
50
33
9
6
51
1.58

Tables:   1

The End!