Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005968.1 Hibiscus syriacus cultivar Beakdansim tig00014024_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67954

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
548--593
10
4.6
10
84
12
51
17
0
4
78
0.91
614--650
2
19.0
2
94
5
67
48
0
0
51
1.00
678--713
18
2.0
18
88
0
54
11
0
5
83
0.80
683--725
18
2.5
17
80
3
50
11
0
9
79
0.95
734--758
2
12.5
2
100
0
50
48
0
0
52
1.00
855--891
9
4.2
9
83
16
51
18
2
0
78
0.87
1124--1298
13
12.8
12
68
22
64
10
4
6
78
1.05
1227--1318
5
17.8
5
76
17
55
11
3
5
79
1.02
1265--1318
20
2.8
20
85
2
65
16
1
1
79
0.91
1254--1319
25
2.6
25
87
2
78
13
1
4
80
0.94
5211--5399
93
2.0
93
91
4
310
33
16
19
30
1.94
5237--5462
93
2.4
93
83
3
281
32
18
18
30
1.94
6584--7444
84
10.3
84
78
5
811
31
24
20
23
1.98
6584--7396
250
3.3
249
83
4
885
31
24
19
24
1.98
6584--7444
413
2.1
416
87
3
1234
31
24
20
23
1.98
9095--9165
5
13.4
5
72
21
56
18
5
1
74
1.08
9320--9370
17
3.0
17
82
5
59
27
0
0
72
0.85
9569--9617
17
2.9
16
82
8
62
12
2
6
79
0.99
9586--9760
5
32.4
5
71
19
59
13
4
4
78
1.05
9598--9761
6
26.7
6
70
21
74
13
4
4
78
1.06
9645--9761
9
12.6
9
71
13
60
12
2
4
80
0.96
9645--9760
5
22.8
5
76
16
71
12
2
4
80
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9685--9732
25
2.0
25
91
4
80
12
0
4
83
0.79
9645--9761
21
5.5
20
75
17
85
12
2
4
80
0.96
9645--9760
11
11.4
10
73
17
71
12
2
4
80
0.97
12258--12325
28
2.4
28
95
0
118
27
8
23
39
1.84
12259--12336
28
2.8
28
90
0
93
28
8
23
39
1.84
24215--24259
2
22.5
2
100
0
90
51
0
0
48
1.00
26113--26165
21
2.5
21
78
0
61
20
24
18
35
1.95
26759--26904
19
8.1
19
73
17
132
13
22
19
45
1.84
26759--26896
52
2.6
52
88
2
195
13
22
20
44
1.85
28593--28818
94
2.5
92
90
5
359
22
12
19
46
1.83
29176--29242
21
3.2
21
66
6
55
23
35
20
19
1.95
29124--29242
42
2.8
42
81
5
107
22
36
18
22
1.95
30583--30618
14
2.6
14
95
0
63
33
0
22
44
1.53
30725--30804
33
2.4
33
93
0
133
46
22
20
11
1.82
30725--30785
19
3.5
19
74
21
69
44
21
21
13
1.86
30810--30940
19
7.7
19
62
23
76
11
23
19
45
1.82
30814--30940
33
3.8
33
96
0
227
11
23
18
45
1.83
30868--30922
14
3.6
14
73
21
56
10
23
20
45
1.82
30857--30940
17
5.1
17
68
25
72
13
23
17
45
1.84
30934--31006
20
3.6
20
67
10
58
26
17
20
35
1.95
33478--33531
24
2.2
24
93
0
90
40
20
18
20
1.91
33478--33545
24
2.8
24
84
0
64
38
20
17
23
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35706--35738
2
16.5
2
93
0
57
54
0
0
45
0.99
43769--43810
13
2.8
16
75
20
54
23
19
23
33
1.97
45927--46009
2
42.0
2
97
2
159
49
0
0
50
1.00
51921--51959
20
2.0
20
89
0
60
46
2
7
43
1.46
53111--53190
23
3.4
23
77
8
90
11
25
17
46
1.81
53115--53194
24
3.4
24
77
19
80
12
26
17
43
1.84
58979--59019
8
5.2
8
82
5
57
34
0
29
36
1.58
59090--59378
128
2.3
127
99
0
569
22
25
21
31
1.98
59999--60099
34
3.0
34
86
0
148
38
3
3
53
1.38
60618--60690
21
3.5
21
92
0
119
20
28
34
16
1.94
60695--60741
21
2.2
21
84
0
58
23
14
40
21
1.90
62470--62553
34
2.6
32
79
7
89
58
2
0
39
1.11
62470--62544
34
2.3
34
81
9
93
60
1
0
38
1.06
63059--63087
2
14.5
2
100
0
58
51
0
0
48
1.00
64123--64157
2
17.5
2
100
0
70
48
0
0
51
1.00
66133--66174
20
2.0
21
90
4
68
59
11
14
14
1.61

Tables:   1

The End!