genome.fa.s597.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000597.1 Hibiscus syriacus cultivar Beakdansim tig00001154_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75275

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4187--4221	15	2.4	15	90	4	54	48	2	5	42	1.41
17369--17483	33	3.5	34	82	5	139	31	11	17	40	1.85
17467--17501	18	2.0	18	94	5	63	40	5	14	40	1.69
17611--18026	102	4.0	103	93	0	656	37	12	19	29	1.89
17611--18027	205	2.0	206	90	3	669	37	12	19	29	1.89
18902--18952	22	2.3	22	96	0	93	25	11	27	35	1.91
19561--19647	27	3.4	25	75	16	81	1	13	4	80	0.92
19582--19648	7	9.4	7	78	16	68	0	13	2	83	0.76
19582--19648	15	4.7	14	76	22	68	0	13	2	83	0.76
36870--36922	3	17.0	3	84	7	70	37	0	0	62	0.96
38134--38193	15	4.1	14	75	12	50	26	1	1	70	1.07
38251--38283	15	2.3	15	89	5	50	42	0	0	57	0.98
43916--43963	25	1.9	26	84	16	66	45	2	0	52	1.12
44757--44785	15	1.9	15	100	0	58	48	0	6	44	1.29
44935--45143	78	2.7	77	81	5	251	37	13	16	32	1.88
47655--47686	13	2.5	13	94	0	55	71	0	12	15	1.14
48647--48702	23	2.5	22	77	8	58	42	14	12	30	1.82
48872--48922	20	2.6	20	70	14	52	54	0	1	43	1.11
49608--49648	18	2.3	18	91	4	66	29	4	2	63	1.28
51328--51363	18	2.0	18	94	0	63	25	27	22	25	2.00
51829--51900	26	3.0	24	68	27	62	26	6	4	62	1.39
61839--62135	152	1.9	152	85	2	407	28	18	26	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69581--69664	40	2.1	40	95	0	150	23	20	28	27	1.99

Tables:   1

The End!