Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005970.1 Hibiscus syriacus cultivar Beakdansim tig00014035_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55642

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1495--1551
21
2.7
21
91
0
96
28
15
26
29
1.96
2278--2366
19
4.5
19
71
14
65
37
21
19
22
1.95
2358--2408
19
2.6
20
96
3
95
41
23
25
9
1.85
5423--5504
29
2.8
29
88
3
121
31
14
10
42
1.81
9697--9786
45
2.0
45
84
0
117
34
25
20
20
1.96
14996--15085
45
2.0
45
84
0
117
34
25
20
20
1.96
15759--15809
25
2.0
26
92
3
86
47
1
45
5
1.38
15753--15817
25
2.3
29
75
22
75
47
1
43
7
1.41
16781--16812
2
16.0
2
100
0
64
50
0
0
50
1.00
17833--17902
19
3.5
19
68
11
59
42
21
17
18
1.89
17852--17923
22
3.4
22
70
18
80
40
25
16
18
1.91
17830--17943
41
2.8
41
89
6
169
41
22
18
17
1.90
17915--17970
20
2.8
20
97
0
103
44
21
23
10
1.83
19169--19245
29
2.7
29
93
0
127
32
15
11
40
1.84
20535--20564
15
2.0
15
93
0
51
56
30
0
13
1.37
23790--23870
29
2.8
29
92
1
126
33
14
9
41
1.79
26711--26743
17
1.9
17
93
0
57
75
0
0
24
0.80
29695--29775
5
15.6
5
77
12
65
74
6
1
18
1.10
30049--30228
29
6.1
29
75
8
139
56
13
13
16
1.67
30059--30218
60
2.7
59
82
2
187
56
13
14
15
1.67
31532--31585
3
17.7
3
90
3
63
66
7
0
25
1.17
33428--33465
20
1.9
20
84
10
51
55
2
15
26
1.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37965--38004
21
1.9
21
89
0
62
10
25
40
25
1.86
37987--38044
23
2.8
21
84
12
75
18
25
34
20
1.96
43717--43753
20
1.9
19
89
10
58
18
24
32
24
1.97
44532--44596
21
3.1
21
84
0
85
43
9
29
18
1.81
44630--44695
33
2.0
33
90
0
105
31
0
45
22
1.53
44880--44918
21
1.9
20
89
5
60
56
0
41
2
1.13
46459--46503
19
2.4
19
88
0
63
33
2
8
55
1.43
46733--47661
194
4.8
198
89
5
1349
37
14
17
31
1.90
50359--51278
198
4.6
196
85
4
1177
39
14
15
30
1.87
50392--51314
395
2.3
396
90
2
1453
38
14
15
31
1.87
51656--51714
16
3.7
16
90
0
91
55
20
15
8
1.65
51656--51721
32
2.1
32
88
0
96
56
19
13
10
1.67
52784--52845
22
2.7
23
90
7
92
58
22
9
9
1.59
52804--52854
10
4.9
10
79
9
57
58
21
7
11
1.58

Tables:   1

The End!