genome.fa.s5971.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005971.1 Hibiscus syriacus cultivar Beakdansim tig00014039_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75568

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7240--7281	2	21.0	2	100	0	84	50	0	0	50	1.00
7482--7531	7	6.9	7	78	17	57	12	8	0	80	0.92
12483--12559	24	3.6	22	75	20	67	31	15	27	25	1.96
18934--18968	18	1.9	18	94	0	61	25	31	2	40	1.70
22654--22700	13	3.7	12	83	16	51	87	6	0	6	0.68
22654--22701	14	3.5	13	86	8	60	87	6	0	6	0.67
22654--22701	15	3.3	14	85	8	60	87	6	0	6	0.67
22741--22805	20	3.2	21	78	6	71	75	0	16	7	1.03
22746--22800	28	2.0	28	82	7	67	76	0	20	3	0.94
23949--24145	109	1.8	109	92	2	333	35	22	18	23	1.96
34794--34860	2	33.5	2	96	0	125	49	0	0	50	1.00
42641--42673	2	16.5	2	100	0	66	48	0	0	51	1.00
43862--43899	17	2.2	18	86	9	53	60	5	5	28	1.40
46128--46188	3	20.7	3	77	15	65	62	1	0	36	1.05
46128--46188	12	5.5	11	79	16	72	62	1	0	36	1.05
46359--47499	136	8.4	136	93	0	1834	25	22	18	33	1.96
47792--47934	76	1.9	76	85	2	198	38	12	20	27	1.89
47907--48021	45	2.8	39	77	16	117	40	13	19	26	1.89
47962--48167	65	3.2	65	94	0	358	40	13	18	27	1.88
48120--48228	35	3.1	35	92	2	173	37	13	20	28	1.91
48108--48432	39	8.4	39	82	6	245	37	12	19	30	1.89
48118--48341	80	2.9	80	81	5	223	37	13	20	27	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48280--48640	40	9.0	40	90	4	403	41	11	16	30	1.84
48460--48528	23	3.3	23	62	29	62	43	11	13	31	1.79
50062--50120	12	4.8	12	80	10	66	5	13	1	79	0.97
50062--50120	24	2.4	25	85	2	84	5	13	1	79	0.97
50062--50115	13	4.2	14	79	13	55	3	12	1	81	0.91
51338--51399	27	2.3	27	94	0	106	50	12	19	17	1.78
51336--51398	21	3.2	20	75	18	60	50	12	19	17	1.77
51351--51398	12	3.8	12	76	15	51	47	12	20	18	1.81
51338--51399	14	4.6	13	73	18	56	50	12	19	17	1.78
55589--55637	3	16.7	3	79	12	57	61	2	0	36	1.08
56277--56316	19	2.1	20	90	9	66	40	17	7	35	1.78
57648--57742	45	2.2	44	87	9	133	56	13	8	21	1.63
61172--61227	28	2.0	28	85	0	76	30	25	16	28	1.96
65537--65579	6	7.2	6	79	10	52	20	0	2	76	0.89
65532--65588	24	2.4	24	85	5	80	24	0	1	73	0.92
65539--65584	11	4.0	11	83	8	56	21	0	2	76	0.90
66429--66493	34	1.9	33	90	3	103	24	29	16	29	1.97
66944--67009	20	3.4	19	85	2	69	33	19	10	36	1.86
66964--67013	20	2.5	20	90	3	75	38	20	6	36	1.77
69281--69330	3	16.0	3	87	8	73	36	0	0	64	0.94
70514--70576	27	2.3	28	83	2	83	25	1	3	69	1.12
70537--70593	3	19.7	3	81	13	66	29	0	1	68	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72824--72856	11	3.0	11	83	16	50	18	0	0	81	0.68
73035--73423	35	10.9	35	77	12	346	43	3	7	46	1.47
73074--73423	71	4.9	70	80	11	358	43	2	6	47	1.42

Tables:   1

The End!