Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005972.1 Hibiscus syriacus cultivar Beakdansim tig00014041_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75705

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
142--200
20
3.0
20
87
0
73
42
22
18
16
1.89
454--519
22
3.1
21
84
4
62
19
12
43
24
1.85
454--525
21
3.4
21
83
5
83
19
11
44
25
1.83
463--525
22
2.9
22
85
2
83
17
12
42
26
1.85
693--827
20
6.7
19
79
9
108
24
17
24
34
1.96
693--830
61
2.3
61
84
0
186
23
16
23
35
1.95
900--940
21
2.0
21
85
0
55
34
29
17
19
1.94
10668--10737
29
2.4
29
80
4
70
41
7
11
40
1.69
12778--12813
12
2.8
12
91
8
54
16
44
27
11
1.82
12842--12987
29
5.0
29
88
1
211
41
6
18
33
1.77
12809--12987
59
3.1
58
87
4
236
39
6
19
34
1.78
12808--12987
88
2.1
86
86
4
245
39
6
20
33
1.78
16017--16050
5
6.6
5
93
6
59
0
17
58
23
1.38
16431--16504
38
2.0
38
94
2
132
13
10
36
39
1.80
16226--16810
255
2.4
244
86
8
833
24
11
27
36
1.90
16686--16758
38
1.9
38
97
2
139
13
10
35
39
1.80
17194--17223
11
2.7
11
94
0
51
90
6
0
3
0.56
21404--21444
19
2.2
19
100
0
82
29
26
12
31
1.92
29326--29623
155
1.9
155
83
4
386
35
14
10
39
1.81
38534--38565
2
16.5
2
93
6
57
50
0
0
50
1.00
39406--39538
61
2.2
60
93
1
230
48
5
13
32
1.65
41264--41308
14
3.2
14
87
0
63
68
20
4
6
1.29
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41759--41809
22
2.3
22
75
0
57
47
7
9
35
1.66
42341--42384
18
2.4
19
80
3
54
52
9
2
36
1.46
42889--43275
139
2.8
139
80
5
356
46
13
11
27
1.78
49946--50039
32
3.0
32
80
1
91
31
20
22
25
1.98
50308--50416
53
2.1
53
98
0
209
25
35
19
19
1.95
50316--50399
26
3.2
26
65
15
73
23
36
17
21
1.94
50818--50875
20
2.9
20
74
5
55
24
18
20
36
1.95
58785--58867
21
3.9
21
75
7
69
25
34
24
15
1.95
61842--61904
17
3.6
17
70
12
56
55
0
0
44
0.99
61836--61996
39
4.3
38
77
12
138
56
0
3
39
1.20
61959--61996
19
2.0
20
94
5
69
65
0
0
34
0.93
62074--62144
13
5.6
13
73
17
60
54
0
0
45
0.99
65965--66048
33
2.5
33
90
1
132
27
40
28
3
1.73
68165--68232
23
3.0
23
93
0
109
32
27
22
17
1.96
68462--68521
31
2.0
31
93
3
104
36
25
0
38
1.56
68564--68626
25
2.5
25
82
7
74
41
7
12
38
1.73
72021--72087
23
3.1
22
67
22
52
58
7
11
22
1.58

Tables:   1

The End!