Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005973.1 Hibiscus syriacus cultivar Beakdansim tig00014042_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66388

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
258--353
21
4.8
20
71
14
72
22
32
21
22
1.98
2129--2209
38
2.2
38
90
2
128
18
14
19
46
1.83
2937--2986
25
2.0
25
96
0
91
44
22
8
26
1.80
3087--3196
20
5.5
20
85
0
139
14
17
25
42
1.87
3479--3518
18
2.3
17
91
4
62
17
2
25
55
1.55
5743--5796
24
2.2
24
90
0
81
38
16
20
24
1.92
5922--5955
12
2.8
12
90
0
50
14
0
29
55
1.40
6865--6890
3
8.7
3
100
0
52
0
0
30
69
0.89
12599--12628
14
2.1
14
93
0
51
40
10
20
30
1.85
20808--20959
7
21.4
7
68
20
54
51
4
5
38
1.45
20807--20935
37
3.5
37
67
17
99
51
4
5
38
1.46
20815--20869
24
2.3
22
77
17
56
49
5
3
41
1.43
20863--20938
31
2.5
28
78
17
80
52
3
5
38
1.43
20916--20959
15
2.8
16
83
10
56
56
2
4
36
1.32
20978--21009
2
16.0
2
100
0
64
50
0
0
50
1.00
21571--21843
2
138.0
2
75
13
199
46
2
7
44
1.43
22136--22221
43
2.0
43
86
0
118
26
31
0
41
1.56
23772--23817
17
2.7
17
86
0
56
73
6
6
13
1.22
27649--27848
43
4.7
42
69
14
104
26
17
6
50
1.69
29654--29704
22
2.3
22
96
0
93
33
25
23
17
1.96
37286--37349
23
2.8
23
82
0
92
34
26
23
15
1.95
39132--39179
19
2.5
20
82
3
62
52
6
12
29
1.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42291--42333
19
2.3
19
84
8
52
58
18
0
23
1.40
42680--42722
18
2.4
18
100
0
86
16
41
18
23
1.89
48422--48483
26
2.5
24
70
15
56
32
29
8
30
1.86
54429--54485
30
2.0
28
86
6
78
17
15
21
45
1.85
59684--59729
2
23.5
2
95
4
85
50
0
0
50
1.00

Tables:   1

The End!