genome.fa.s5974.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005974.1 Hibiscus syriacus cultivar Beakdansim tig00014043_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75117

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1638--1673	18	2.0	18	94	0	63	55	25	2	16	1.55
2163--2338	66	2.6	65	89	8	257	53	15	2	27	1.54
3681--3756	21	3.6	21	77	7	82	18	21	36	23	1.95
4112--4233	63	1.9	63	80	3	138	32	35	13	18	1.90
6495--6760	40	6.7	40	80	8	240	19	15	22	41	1.89
6495--6760	20	13.3	20	76	13	210	19	15	22	41	1.89
6531--6786	40	6.4	40	78	7	159	21	14	22	41	1.89
6660--6812	80	1.9	80	81	5	184	25	11	22	40	1.87
7247--7295	24	2.0	24	100	0	98	20	26	4	48	1.67
28167--28210	24	2.0	21	82	13	52	36	4	13	45	1.64
28276--28602	77	4.3	77	78	6	202	38	9	15	36	1.79
28329--28665	77	4.4	77	81	5	353	38	7	16	37	1.77
28326--28664	154	2.2	153	83	6	409	38	7	15	37	1.77
28406--28740	153	2.2	153	79	9	346	40	8	15	35	1.78
28740--28962	123	1.8	123	90	0	356	41	7	10	40	1.68
29022--29058	19	1.9	19	89	10	58	35	16	13	35	1.88
29064--29356	77	3.8	77	85	2	340	37	17	10	34	1.84
30594--30650	21	2.4	25	86	11	77	47	8	1	42	1.45
32188--32229	21	2.0	21	85	0	57	33	21	14	30	1.93
32913--33002	41	2.2	41	87	0	126	40	23	13	23	1.90
34070--34117	21	2.3	21	96	0	87	41	12	18	27	1.86
38727--38774	21	2.3	21	96	0	87	41	12	18	27	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39239--39405	41	4.1	41	81	0	145	38	16	20	25	1.92
39271--39339	22	3.3	22	63	19	56	37	17	17	27	1.92
39266--39330	19	3.3	19	64	19	51	38	13	21	26	1.91
39264--39420	82	1.9	82	89	0	242	38	17	16	27	1.91
39260--39416	41	3.8	41	84	3	208	38	17	16	27	1.92
48526--48574	20	2.5	20	83	6	55	24	24	12	38	1.90
58424--58491	23	3.0	24	77	12	72	39	22	19	19	1.92
62189--62221	11	2.8	12	90	9	50	51	6	9	33	1.58
69079--69127	18	2.6	19	83	6	64	44	24	8	22	1.79
69121--69161	19	2.1	20	86	4	57	24	19	14	41	1.89
69116--69939	419	2.0	420	94	0	1434	31	21	11	34	1.90
72161--72257	20	4.8	20	77	14	94	23	35	17	23	1.96
73599--73740	75	1.9	76	88	4	216	28	2	18	50	1.58
73812--73879	20	3.5	19	77	2	73	33	25	20	20	1.97
73812--73914	39	2.6	39	80	3	91	33	23	20	22	1.97
74174--74207	17	1.9	18	88	5	52	17	2	26	52	1.58

Tables:   1

The End!