genome.fa.s5975.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005975.1 Hibiscus syriacus cultivar Beakdansim tig00014048_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  99997

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11426--11598	31	5.6	31	90	0	256	40	21	16	21	1.91
11426--11598	93	1.9	93	91	0	283	40	21	16	21	1.91
12954--12992	20	2.0	20	90	10	62	23	33	30	12	1.92
14156--14218	31	2.0	31	84	6	83	39	20	19	20	1.92
14862--15018	64	2.4	63	81	8	165	26	19	21	33	1.96
18064--18141	40	1.9	41	92	2	131	17	8	12	60	1.58
18076--18161	40	2.2	40	86	0	118	18	8	13	59	1.59
28384--28455	19	3.6	19	76	17	67	76	1	15	6	1.06
28382--28448	26	2.6	26	79	13	84	76	1	16	5	1.06
29574--29710	46	2.9	46	90	3	202	27	20	18	33	1.96
29622--29933	113	2.8	111	90	3	486	27	22	18	30	1.98
29846--29980	46	2.9	46	91	1	216	28	21	17	32	1.96
29755--30136	157	2.4	158	91	3	588	27	22	17	32	1.96
29553--30083	270	2.0	271	93	0	902	27	22	18	32	1.97
30003--30210	48	4.3	49	80	9	223	27	22	15	34	1.94
30003--30210	96	2.2	96	85	5	269	27	22	15	34	1.94
34645--34703	31	1.9	31	89	0	91	42	6	8	42	1.61
34727--35290	22	25.6	22	84	6	698	47	9	0	42	1.37
36912--36986	37	2.0	36	84	5	96	49	5	2	42	1.39
37783--37827	20	2.4	19	82	10	56	26	26	6	40	1.81
41337--41475	60	2.3	59	86	4	190	43	6	21	28	1.77
41359--41472	29	3.9	29	69	13	88	44	5	20	29	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42077--42302	82	2.7	83	86	1	319	32	14	17	35	1.90
42139--42267	41	3.2	40	67	12	100	31	12	17	38	1.87
42048--42328	83	3.4	82	81	1	283	32	16	17	33	1.93
42588--42722	20	6.7	20	78	7	103	34	23	17	24	1.95
42585--42713	61	2.1	61	83	0	159	36	23	16	24	1.94
42598--42716	61	2.0	61	86	0	166	35	24	15	24	1.95
43195--43253	20	3.0	20	87	0	73	16	18	22	42	1.89
43390--43444	25	2.2	24	78	15	58	20	9	18	52	1.71
44782--44828	21	2.2	21	84	0	58	23	17	29	29	1.97
45109--45153	20	2.3	20	84	3	65	37	20	24	17	1.93
45153--45209	14	3.8	14	76	17	60	49	22	15	12	1.78
45137--45227	32	2.8	33	91	3	148	48	20	17	13	1.81
45246--45334	14	5.7	14	73	21	79	11	16	22	49	1.77
45239--45350	33	3.4	33	98	1	217	12	18	21	47	1.81
45335--45390	20	2.8	19	86	7	76	16	25	23	35	1.94
47259--47294	14	2.6	14	90	0	54	30	0	22	47	1.52
47421--47474	14	3.5	14	77	22	63	48	20	20	11	1.80
47506--47593	20	4.4	20	78	5	106	15	20	23	39	1.91
47807--47874	20	3.3	20	77	2	73	20	16	22	41	1.90
47806--47897	41	2.3	40	84	1	121	21	16	21	40	1.91
47883--47934	20	2.5	21	87	3	70	21	23	17	38	1.93
48719--48772	24	2.2	24	83	0	63	24	18	18	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48951--48983	6	5.5	6	92	0	57	78	0	21	0	0.75
51080--51285	42	4.9	41	73	9	164	23	18	36	21	1.95
51080--51146	21	3.2	21	68	4	55	19	20	35	23	1.95
51110--51284	84	2.1	84	98	0	341	24	17	37	21	1.94
51504--51688	91	2.0	92	91	6	304	47	18	12	21	1.82
53452--53497	19	2.4	19	100	0	92	47	21	19	10	1.80
53382--53480	33	3.0	33	90	1	153	40	23	25	11	1.87
54134--54187	20	2.7	20	94	0	90	27	18	22	31	1.97
54293--54338	19	2.3	20	81	7	58	26	17	28	28	1.98
57582--57673	43	2.1	45	83	4	116	25	22	22	29	1.99
64731--64809	6	13.2	6	97	0	140	31	49	16	2	1.59
64807--64845	5	7.8	5	91	0	51	23	33	41	2	1.68
70696--70872	6	29.5	6	98	0	327	31	50	16	1	1.55
70874--70912	5	7.8	5	91	0	51	23	33	41	2	1.68
88829--88869	2	20.5	2	100	0	82	51	0	0	48	1.00
94052--94108	30	2.0	28	86	6	78	45	21	15	17	1.85

Tables:   1

The End!